Wall clock time and date at job start Tue Mar 31 2020 11:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 112.90860 * 2 1 4 4 O 1.21279 * 119.99677 * 131.25103 * 3 2 1 5 5 N 1.34778 * 119.99900 * 311.25930 * 3 2 1 6 6 C 1.46498 * 119.99688 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46983 * 179.97438 * 6 5 3 8 8 C 1.53001 * 109.46984 * 174.93408 * 7 6 5 9 9 C 1.52997 * 115.54989 * 65.29068 * 8 7 6 10 10 N 1.46496 * 109.47592 * 65.15024 * 9 8 7 11 11 C 1.36935 * 120.00266 * 175.04683 * 10 9 8 12 12 H 1.07997 * 120.00105 * 359.97438 * 11 10 9 13 13 C 1.38819 * 120.00102 * 179.97438 * 11 10 9 14 14 N 1.31615 * 119.99703 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00023 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47184 * 59.99763 * 15 13 11 17 17 H 1.48500 * 109.47061 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46934 * 299.99839 * 15 13 11 19 19 C 1.53000 * 117.50016 * 279.61672 * 8 7 6 20 20 C 1.53005 * 117.49737 * 210.95814 * 8 7 6 21 21 C 1.53775 * 113.61656 * 131.25448 * 2 1 3 22 22 C 1.53787 * 87.08020 * 89.11594 * 21 2 1 23 23 F 1.39896 * 113.61419 * 139.98398 * 22 21 2 24 24 F 1.39898 * 113.61276 * 270.88062 * 22 21 2 25 25 C 1.53773 * 87.08140 * 25.43468 * 22 21 2 26 26 H 1.09002 * 109.46346 * 288.74404 * 1 2 3 27 27 H 1.08991 * 109.47327 * 48.74038 * 1 2 3 28 28 H 1.08994 * 109.46934 * 168.74844 * 1 2 3 29 29 H 0.96998 * 120.00265 * 359.97438 * 5 3 2 30 30 H 1.08999 * 109.47063 * 299.99515 * 6 5 3 31 31 H 1.09004 * 109.47447 * 59.99991 * 6 5 3 32 32 H 1.09005 * 109.46599 * 294.93176 * 7 6 5 33 33 H 1.08992 * 109.47525 * 54.92948 * 7 6 5 34 34 H 1.09005 * 109.47105 * 185.14611 * 9 8 7 35 35 H 1.08996 * 109.47268 * 305.14172 * 9 8 7 36 36 H 0.97002 * 119.99923 * 355.03628 * 10 9 8 37 37 H 0.97001 * 119.99820 * 179.97438 * 14 13 11 38 38 H 1.09007 * 117.49313 * 359.97438 * 19 8 7 39 39 H 1.08996 * 117.50322 * 145.01929 * 19 8 7 40 40 H 1.08995 * 117.49828 * 214.97832 * 20 8 7 41 41 H 1.09003 * 117.49325 * 359.97438 * 20 8 7 42 42 H 1.08997 * 113.61519 * 334.56762 * 21 2 1 43 43 H 1.08996 * 113.61508 * 203.66180 * 21 2 1 44 44 H 1.08997 * 113.61653 * 89.11619 * 25 22 21 45 45 H 1.08997 * 113.61490 * 220.02375 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1167 1.3882 0.0000 4 8 2.9906 1.6771 0.7897 5 7 1.6699 2.3085 -0.8774 6 6 2.2399 3.6581 -0.8770 7 6 1.5627 4.4980 -1.9619 8 6 2.0664 5.9403 -1.8790 9 6 3.5503 6.1401 -2.1935 10 7 3.8023 5.8008 -3.5961 11 6 5.0448 5.9996 -4.1361 12 1 5.8390 6.4071 -3.5281 13 6 5.2838 5.6776 -5.4651 14 7 4.3161 5.1806 -6.2060 15 14 6.9786 5.9495 -6.2020 16 1 7.9786 5.1469 -5.4529 17 1 6.9723 5.5294 -7.6263 18 1 7.3320 7.3891 -6.1126 19 6 1.4409 6.8471 -0.8172 20 6 1.1001 7.0511 -2.2955 21 6 2.1461 -0.9291 1.0592 22 6 2.0930 -2.0425 -0.0002 23 9 3.2208 -2.8702 -0.0003 24 9 0.8916 -2.7593 -0.0002 25 6 2.1461 -0.9290 -1.0594 26 1 -0.3632 0.3303 0.9732 27 1 -0.3633 0.6777 -0.7725 28 1 -0.3633 -1.0079 -0.2005 29 1 0.9711 2.0773 -1.5092 30 1 2.0766 4.1211 0.0962 31 1 3.3098 3.6008 -1.0773 32 1 1.8012 4.0856 -2.9424 33 1 0.4830 4.4811 -1.8136 34 1 3.8221 7.1809 -2.0170 35 1 4.1482 5.4945 -1.5503 36 1 3.0890 5.4351 -4.1423 37 1 4.4829 4.9559 -7.1347 38 1 0.6702 6.4162 -0.1780 39 1 2.0864 7.5863 -0.3429 40 1 1.5216 7.9244 -2.7931 41 1 0.1057 6.7542 -2.6290 42 1 1.4946 -1.1087 1.9144 43 1 3.1591 -0.6499 1.3488 44 1 3.1591 -0.6498 -1.3491 45 1 1.4945 -1.1085 -1.9146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167709618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:12 Heat of formation + Delta-G solvation = -88.118926 kcal Electronic energy + Delta-G solvation = -26735.201532 eV Core-core repulsion = 22617.949820 eV Total energy + Delta-G solvation = -4117.251711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.13815 -47.44840 -40.58855 -38.47188 -37.43559 -34.93958 -33.92548 -30.88424 -30.56707 -29.17734 -26.68963 -25.97829 -24.98255 -23.21137 -22.74459 -21.90053 -21.30841 -19.59737 -18.56101 -18.12148 -17.11171 -17.06199 -16.73980 -16.19689 -15.87331 -15.53612 -15.13631 -14.50924 -14.47636 -14.41899 -14.11560 -14.04954 -13.81002 -13.71822 -13.32664 -13.13760 -12.80766 -12.63548 -12.56442 -12.34262 -12.12026 -11.97257 -11.61771 -11.44938 -11.31184 -11.21312 -10.97728 -10.82576 -10.78724 -10.60901 -10.17739 -9.93249 -9.86784 -9.68323 -9.32602 -9.07384 -8.84061 -6.90661 -5.76695 -3.04354 2.42994 2.94020 3.17391 3.44011 3.44454 3.48843 3.49670 3.82916 3.86399 4.03582 4.10696 4.56134 4.61355 4.70069 4.92788 4.97381 5.05617 5.11860 5.13906 5.16235 5.26216 5.28548 5.40663 5.42574 5.50532 5.57307 5.63657 5.68641 5.74596 5.78407 5.87422 6.13110 6.14899 6.20104 6.38277 6.42808 6.44746 6.49932 6.75626 6.81741 7.40607 7.70041 8.10581 8.42591 9.54253 10.12266 10.47924 11.46151 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.003092 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.163692 B = 9052.006176 C =10596.199908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.532 3.468 4 O -0.534 6.534 5 N -0.720 5.720 6 C 0.122 3.878 7 C -0.088 4.088 8 C -0.120 4.120 9 C 0.187 3.813 10 N -0.727 5.727 11 C -0.239 4.239 12 H 0.069 0.931 13 C -0.013 4.013 14 N -0.934 5.934 15 Si 0.906 3.094 16 H -0.286 1.286 17 H -0.291 1.291 18 H -0.286 1.286 19 C -0.178 4.178 20 C -0.163 4.163 21 C -0.139 4.139 22 C 0.256 3.744 23 F -0.187 7.187 24 F -0.177 7.177 25 C -0.149 4.149 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.400 0.600 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.022 0.978 35 H 0.021 0.979 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.126 0.874 44 H 0.119 0.881 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.303 -10.645 13.448 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 C 0.316 3.684 4 O -0.411 6.411 5 N -0.371 5.371 6 C -0.001 4.001 7 C -0.126 4.126 8 C -0.121 4.121 9 C 0.060 3.940 10 N -0.371 5.371 11 C -0.370 4.370 12 H 0.087 0.913 13 C -0.208 4.208 14 N -0.583 5.583 15 Si 0.737 3.263 16 H -0.213 1.213 17 H -0.217 1.217 18 H -0.213 1.213 19 C -0.215 4.215 20 C -0.200 4.200 21 C -0.177 4.177 22 C 0.220 3.780 23 F -0.168 7.168 24 F -0.158 7.158 25 C -0.187 4.187 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.234 0.766 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.145 0.855 44 H 0.138 0.862 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.486 -10.413 13.986 20.880 hybrid contribution 0.351 -0.237 -1.063 1.144 sum -11.135 -10.649 12.923 20.110 Atomic orbital electron populations 1.21775 0.90229 1.04097 1.03424 1.21874 0.97839 0.92846 0.98315 1.19838 0.82320 0.85486 0.80707 1.90723 1.30823 1.80181 1.39329 1.46016 1.41359 1.12641 1.37106 1.21424 0.99149 0.80166 0.99321 1.21217 0.98618 0.93225 0.99553 1.21557 0.96153 0.90826 1.03551 1.20192 0.88768 0.97225 0.87857 1.42267 1.11466 1.77185 1.06189 1.19195 0.88640 1.35281 0.93897 0.91322 1.24700 0.97601 1.01963 0.96578 1.69643 1.31326 1.49688 1.07615 0.86288 0.84051 0.77826 0.78159 1.21273 1.21703 1.21315 1.23004 1.03321 1.03177 0.92025 1.22938 0.99485 1.00827 0.96764 1.24074 1.05696 0.90875 0.97038 1.21934 0.71791 0.83184 1.01089 1.93029 1.50829 1.75693 1.97219 1.92992 1.44972 1.80589 1.97259 1.24151 1.05183 0.91886 0.97463 0.91000 0.91184 0.90218 0.76578 0.91539 0.90413 0.89848 0.92024 0.95994 0.96102 0.78202 0.93545 0.89330 0.88957 0.88543 0.89356 0.88285 0.85533 0.86223 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.96 37.16 0.33 -0.58 16 2 C -0.11 -0.94 1.26 -154.84 -0.19 -1.14 16 3 C 0.53 6.52 6.93 -10.98 -0.08 6.44 16 4 O -0.53 -8.66 15.90 5.56 0.09 -8.57 16 5 N -0.72 -8.12 5.44 -60.29 -0.33 -8.44 16 6 C 0.12 1.66 5.41 -4.04 -0.02 1.64 16 7 C -0.09 -1.20 5.12 -26.73 -0.14 -1.33 16 8 C -0.12 -1.84 1.56 -154.51 -0.24 -2.08 16 9 C 0.19 3.71 5.93 -4.05 -0.02 3.69 16 10 N -0.73 -17.93 5.52 -59.91 -0.33 -18.26 16 11 C -0.24 -6.64 9.99 -15.06 -0.15 -6.80 16 12 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 13 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 14 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 15 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 C -0.18 -2.28 9.94 -26.69 -0.27 -2.54 16 20 C -0.16 -2.33 9.94 -26.69 -0.27 -2.59 16 21 C -0.14 -1.26 6.78 -25.92 -0.18 -1.43 16 22 C 0.26 2.43 3.26 -25.92 -0.08 2.35 16 23 F -0.19 -2.13 17.41 2.25 0.04 -2.09 16 24 F -0.18 -1.71 15.53 2.25 0.03 -1.68 16 25 C -0.15 -1.29 6.98 -25.92 -0.18 -1.47 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.38 7.00 -51.93 -0.36 0.02 16 28 H 0.08 0.50 6.22 -51.93 -0.32 0.18 16 29 H 0.40 3.46 7.36 -40.82 -0.30 3.16 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.30 7.23 -51.93 -0.38 0.92 16 32 H 0.08 1.31 7.49 -51.93 -0.39 0.92 16 33 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 34 H 0.02 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.02 0.43 7.11 -51.93 -0.37 0.06 16 36 H 0.38 9.88 7.03 -40.82 -0.29 9.60 16 37 H 0.25 7.37 8.31 -40.82 -0.34 7.04 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.10 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.13 1.30 7.43 -51.93 -0.39 0.91 16 44 H 0.12 1.13 8.09 -51.93 -0.42 0.71 16 45 H 0.10 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 373.64 15.07 5.63 5.63 Total: -1.00 -32.19 373.64 -7.72 -39.91 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.98 Total: 9.50 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -1.58 Total: -6.31 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.07 Total: -53.77 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.09 Total: -8.57 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.07 Total: -3.76 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.19 -7.72 -39.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167709618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.209 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds