Wall clock time and date at job start Tue Mar 31 2020 11:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99457 * 2 1 4 4 H 1.48496 * 109.47111 * 269.99393 * 3 2 1 5 5 H 1.48494 * 109.47201 * 30.00136 * 3 2 1 6 6 H 1.48506 * 109.46710 * 149.99898 * 3 2 1 7 7 C 1.37876 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99985 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99653 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47008 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47301 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47059 * 179.97438 * 11 10 9 13 13 C 1.38517 * 119.99545 * 179.72363 * 12 11 10 14 14 N 1.32313 * 118.87609 * 0.02562 * 13 12 11 15 15 C 1.32924 * 120.58374 * 179.75975 * 14 13 12 16 16 N 1.37194 * 134.81613 * 180.18744 * 15 14 13 17 17 H 0.97001 * 126.28387 * 0.28275 * 16 15 14 18 18 C 1.36448 * 107.43358 * 180.28397 * 16 15 14 19 19 N 1.30086 * 109.96022 * 0.02562 * 18 16 15 20 20 C 1.35579 * 109.44443 * 359.97438 * 19 18 16 21 21 C 1.40552 * 134.56361 * 180.02562 * 20 19 18 22 22 N 1.38359 * 120.71380 * 359.96064 * 21 20 19 23 23 C 1.48539 * 110.99834 * 62.62070 * 22 21 20 24 24 C 1.54934 * 103.22282 * 159.72352 * 23 22 21 25 25 C 1.54591 * 102.92688 * 322.58746 * 24 23 22 26 26 C 1.47903 * 111.00366 * 180.02562 * 22 21 20 27 27 N 1.32695 * 118.86591 * 180.27603 * 13 12 11 28 28 H 0.96996 * 120.00642 * 0.02562 * 1 2 3 29 29 H 1.08990 * 109.47431 * 59.99962 * 9 7 2 30 30 H 1.09002 * 109.47072 * 299.99242 * 9 7 2 31 31 H 1.09004 * 109.47038 * 59.99609 * 10 9 7 32 32 H 1.09000 * 109.46939 * 300.00262 * 10 9 7 33 33 H 1.09004 * 109.47066 * 60.00027 * 11 10 9 34 34 H 1.08994 * 109.46974 * 300.00175 * 11 10 9 35 35 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 36 36 H 1.08007 * 125.01900 * 180.02562 * 18 16 15 37 37 H 1.09000 * 110.66777 * 278.15754 * 23 22 21 38 38 H 1.08994 * 110.66591 * 41.29229 * 23 22 21 39 39 H 1.09001 * 110.72650 * 204.23187 * 24 23 22 40 40 H 1.08996 * 110.72624 * 80.94931 * 24 23 22 41 41 H 1.09002 * 110.30943 * 263.04563 * 25 24 23 42 42 H 1.09000 * 110.31650 * 140.87557 * 25 24 23 43 43 H 1.09000 * 109.91022 * 333.50563 * 26 22 21 44 44 H 1.09000 * 109.91893 * 94.80433 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 6 5.5517 -2.6363 0.0022 12 7 6.0400 -4.0175 0.0040 13 6 7.4019 -4.2705 -0.0015 14 7 8.2417 -3.2481 -0.0078 15 6 9.5553 -3.4518 -0.0084 16 7 10.6600 -2.6382 -0.0108 17 1 10.6585 -1.6682 -0.0087 18 6 11.7611 -3.4440 -0.0166 19 7 11.3973 -4.6930 -0.0184 20 6 10.0437 -4.7689 -0.0134 21 6 9.1150 -5.8239 -0.0121 22 7 9.5409 -7.1402 -0.0174 23 6 10.3169 -7.4536 1.2098 24 6 10.2443 -8.9991 1.2900 25 6 8.8079 -9.3035 0.8062 26 6 8.3904 -8.0697 -0.0155 27 7 7.8195 -5.5300 -0.0054 28 1 -0.4851 0.8400 -0.0004 29 1 3.8746 -0.6799 0.8910 30 1 3.8752 -0.6803 -0.8889 31 1 3.6587 -3.1509 -0.8875 32 1 3.6580 -3.1496 0.8925 33 1 5.9150 -2.1217 0.8918 34 1 5.9149 -2.1232 -0.8881 35 1 5.4098 -4.7549 0.0045 36 1 12.7836 -3.0963 -0.0192 37 1 11.3500 -7.1218 1.1069 38 1 9.8516 -7.0006 2.0852 39 1 10.3858 -9.3392 2.3159 40 1 10.9794 -9.4548 0.6267 41 1 8.1412 -9.4337 1.6586 42 1 8.8007 -10.1953 0.1795 43 1 7.5271 -7.5907 0.4464 44 1 8.1514 -8.3670 -1.0366 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168429293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:00 Heat of formation + Delta-G solvation = 113.482369 kcal Electronic energy + Delta-G solvation = -25600.399453 eV Core-core repulsion = 21974.871768 eV Total energy + Delta-G solvation = -3625.527686 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.56505 -40.08237 -38.83782 -36.10361 -34.23365 -33.41366 -32.36486 -31.86471 -30.98389 -29.23813 -28.63302 -26.85374 -24.48196 -23.36240 -22.47502 -22.03682 -21.23618 -21.01209 -20.38350 -19.16721 -17.97086 -17.27031 -16.70801 -16.46013 -16.06616 -15.88456 -15.26882 -14.92822 -14.66866 -14.42890 -14.35158 -13.93963 -13.80854 -13.42042 -12.96095 -12.69640 -12.52201 -12.09870 -11.92622 -11.88017 -11.65460 -11.47435 -11.39990 -11.06616 -10.93641 -10.90398 -10.50375 -10.15631 -9.95099 -9.80656 -9.75315 -9.70278 -9.23867 -9.04563 -8.82359 -8.56726 -7.63815 -6.07141 -4.05814 0.74216 1.31479 2.29107 2.65359 2.98063 3.29255 3.36673 3.38709 3.40270 3.82891 4.05160 4.20269 4.33546 4.42804 4.46139 4.54661 4.69807 4.85255 5.01984 5.15581 5.16102 5.26730 5.49365 5.50649 5.52946 5.55656 5.62173 5.67077 5.70601 5.77792 5.91516 6.02010 6.04505 6.22042 6.45387 6.48841 6.68251 6.75206 6.81371 6.98647 7.21574 7.27254 7.35176 7.46052 7.66664 7.75505 8.40209 8.49925 8.97172 9.54860 11.06185 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.002684 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.126773 B =10430.624331 C =11863.256684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.115 4.115 11 C 0.133 3.867 12 N -0.686 5.686 13 C 0.613 3.387 14 N -0.591 5.591 15 C 0.338 3.662 16 N -0.587 5.587 17 H 0.429 0.571 18 C 0.237 3.763 19 N -0.449 5.449 20 C -0.119 4.119 21 C 0.456 3.544 22 N -0.449 5.449 23 C 0.053 3.947 24 C -0.124 4.124 25 C -0.133 4.133 26 C 0.031 3.969 27 N -0.603 5.603 28 H 0.263 0.737 29 H 0.018 0.982 30 H 0.014 0.986 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.415 0.585 36 H 0.222 0.778 37 H 0.102 0.898 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.379 -13.934 2.353 29.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.153 4.153 11 C 0.010 3.990 12 N -0.322 5.322 13 C 0.253 3.747 14 N -0.325 5.325 15 C 0.092 3.908 16 N -0.204 5.204 17 H 0.268 0.732 18 C -0.051 4.051 19 N -0.168 5.168 20 C -0.245 4.245 21 C 0.205 3.795 22 N -0.167 5.167 23 C -0.072 4.072 24 C -0.162 4.162 25 C -0.171 4.171 26 C -0.095 4.095 27 N -0.333 5.333 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.253 0.747 36 H 0.238 0.762 37 H 0.120 0.880 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 26.005 -14.295 1.893 29.735 hybrid contribution 0.001 1.984 0.365 2.017 sum 26.006 -12.312 2.258 28.861 Atomic orbital electron populations 1.69911 1.06309 1.26944 1.51020 1.25031 0.94745 0.99211 0.94515 0.86772 0.80378 0.83577 0.78544 1.20270 1.21386 1.18930 1.21102 0.89311 0.94538 1.51009 0.90969 1.19480 0.97256 0.91344 0.96594 1.21731 0.90603 1.01063 1.01909 1.21631 0.95674 0.79865 1.01871 1.44471 1.00234 1.10076 1.77369 1.18618 0.86897 0.82314 0.86869 1.66655 0.99733 1.35023 1.31110 1.18417 0.87410 0.88926 0.96048 1.42748 1.04202 1.10220 1.63261 0.73170 1.25336 0.92701 0.85039 1.02069 1.70175 1.09991 1.18477 1.18120 1.19366 0.91976 0.93111 1.20074 1.19005 0.85629 0.89452 0.85434 1.61518 1.19973 0.99335 1.35843 1.23285 0.99549 0.96159 0.88230 1.22537 0.97401 0.94310 1.01946 1.22461 0.96559 0.98134 0.99947 1.22992 0.92921 0.91583 1.02048 1.67803 1.15215 1.21256 1.28987 0.92695 0.96343 0.96760 0.92023 0.92013 0.91847 0.91823 0.74713 0.76172 0.88003 0.92897 0.90364 0.90221 0.91023 0.90604 0.89550 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.20 4.04 -27.88 -0.11 -0.32 16 10 C -0.11 -2.16 5.27 -26.73 -0.14 -2.30 16 11 C 0.13 2.20 5.63 -4.04 -0.02 2.17 16 12 N -0.69 -10.38 5.71 -62.27 -0.36 -10.74 16 13 C 0.61 9.79 8.42 -322.62 -2.72 7.07 16 14 N -0.59 -9.50 9.59 -13.23 -0.13 -9.63 16 15 C 0.34 4.77 8.50 -155.80 -1.32 3.45 16 16 N -0.59 -5.55 6.20 -13.24 -0.08 -5.63 16 17 H 0.43 2.77 8.96 -40.82 -0.37 2.40 16 18 C 0.24 1.93 12.99 -89.42 -1.16 0.77 16 19 N -0.45 -5.36 10.93 -11.80 -0.13 -5.49 16 20 C -0.12 -1.68 6.72 -84.50 -0.57 -2.25 16 21 C 0.46 6.50 6.23 -154.73 -0.96 5.54 16 22 N -0.45 -5.37 5.30 -168.85 -0.90 -6.27 16 23 C 0.05 0.51 6.06 -1.90 -0.01 0.50 16 24 C -0.12 -0.87 7.06 -24.87 -0.18 -1.05 16 25 C -0.13 -0.98 6.93 -25.37 -0.18 -1.16 16 26 C 0.03 0.32 6.37 -2.75 -0.02 0.30 16 27 N -0.60 -9.03 8.31 -12.95 -0.11 -9.14 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 29 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 30 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.42 5.65 8.58 -40.82 -0.35 5.30 16 36 H 0.22 0.60 8.06 -52.48 -0.42 0.18 16 37 H 0.10 1.00 7.84 -51.93 -0.41 0.60 16 38 H 0.05 0.54 7.99 -51.93 -0.42 0.13 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 1.00 6.54 -51.93 -0.34 0.66 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 359.88 15.07 5.42 5.42 Total: -1.00 -34.64 359.88 -14.45 -49.08 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.46 Total: 2.94 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -7.82 Total: -0.48 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -0.92 Total: -73.90 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.64 -14.45 -49.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.567 kcal (2) G-P(sol) polarization free energy of solvation -34.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds