Wall clock time and date at job start Tue Mar 31 2020 11:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 F 1.39901 * 109.46853 * 2 1 4 4 F 1.39901 * 109.47280 * 239.99963 * 2 1 3 5 5 C 1.52997 * 109.47052 * 119.99701 * 2 1 3 6 6 C 1.52996 * 109.47177 * 179.97438 * 5 2 1 7 7 C 1.50707 * 109.47263 * 179.97438 * 6 5 2 8 8 O 1.21281 * 119.99479 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00140 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99960 * 180.02562 * 9 7 6 11 11 H 1.08994 * 112.88607 * 333.15932 * 10 9 7 12 12 C 1.53945 * 113.66561 * 104.50930 * 10 9 7 13 13 C 1.53957 * 87.29527 * 89.82756 * 12 10 9 14 14 H 1.08997 * 113.65822 * 139.20712 * 13 12 10 15 15 N 1.46500 * 113.66452 * 270.26429 * 13 12 10 16 16 C 1.36930 * 120.00101 * 255.49811 * 15 13 12 17 17 H 1.08000 * 120.00135 * 359.97438 * 16 15 13 18 18 C 1.38814 * 119.99954 * 180.02562 * 16 15 13 19 19 N 1.31607 * 120.00190 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99759 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47240 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46842 * 120.00000 * 20 18 16 23 23 H 1.48498 * 109.46833 * 239.99766 * 20 18 16 24 24 C 1.52906 * 86.77902 * 24.73921 * 13 12 10 25 25 C 1.52911 * 121.13708 * 209.38067 * 24 13 12 26 26 C 1.53953 * 86.78498 * 209.37459 * 25 24 13 27 27 C 1.52908 * 121.14322 * 100.81952 * 24 13 12 28 28 H 1.09001 * 109.47247 * 300.00418 * 1 2 3 29 29 H 1.09000 * 109.46824 * 60.00221 * 1 2 3 30 30 H 1.08998 * 109.46646 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46917 * 60.00302 * 5 2 1 32 32 H 1.09001 * 109.46997 * 300.00034 * 5 2 1 33 33 H 1.08999 * 109.47127 * 60.00064 * 6 5 2 34 34 H 1.09001 * 109.47283 * 299.99979 * 6 5 2 35 35 H 0.97002 * 119.99641 * 0.02562 * 9 7 6 36 36 H 1.09004 * 113.57802 * 335.22640 * 12 10 9 37 37 H 1.08997 * 113.65280 * 204.44386 * 12 10 9 38 38 H 0.96999 * 119.99920 * 75.49149 * 15 13 12 39 39 H 0.96997 * 120.00331 * 180.02562 * 19 18 16 40 40 H 1.09001 * 113.66341 * 323.84544 * 25 24 13 41 41 H 1.08996 * 113.66624 * 94.90194 * 25 24 13 42 42 H 1.09002 * 113.58246 * 270.13531 * 26 25 24 43 43 H 1.08997 * 113.65416 * 139.34277 * 26 25 24 44 44 H 1.09003 * 113.66175 * 265.09643 * 27 24 13 45 45 H 1.09004 * 113.66268 * 36.05302 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2493 6 6 3.5700 -0.7217 1.2490 7 6 4.0724 -1.4316 2.4798 8 8 3.2842 -1.8921 3.2783 9 7 5.3974 -1.5555 2.6927 10 6 5.8856 -2.2460 3.8889 11 1 5.1825 -2.2017 4.7205 12 6 6.4236 -3.6610 3.6093 13 6 7.8012 -3.0130 3.3801 14 1 8.6282 -3.5815 3.8054 15 7 8.0385 -2.6114 1.9913 16 6 8.8674 -3.3560 1.1954 17 1 9.3467 -4.2390 1.5916 18 6 9.0926 -2.9751 -0.1203 19 7 8.5090 -1.8988 -0.6030 20 14 10.2241 -3.9905 -1.2059 21 1 10.7507 -5.1427 -0.4311 22 1 9.4657 -4.4899 -2.3810 23 1 11.3547 -3.1463 -1.6688 24 6 7.3171 -1.8715 4.2749 25 6 7.8386 -0.4461 4.0899 26 6 7.5978 -0.2547 5.5983 27 6 7.7426 -1.7808 5.7408 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6767 -1.7489 1.2492 32 1 1.6767 -0.2073 2.1392 33 1 3.9337 0.3058 1.2487 34 1 3.9330 -1.2359 0.3590 35 1 6.0277 -1.1875 2.0538 36 1 6.0026 -4.1185 2.7139 37 1 6.3908 -4.3206 4.4764 38 1 7.6083 -1.8182 1.6356 39 1 8.6661 -1.6329 -1.5225 40 1 8.8897 -0.3983 3.8052 41 1 7.1998 0.1756 3.4626 42 1 6.5998 0.1127 5.8375 43 1 8.3863 0.3067 6.0993 44 1 7.0271 -2.2255 6.4324 45 1 8.7663 -2.1097 5.9203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203094396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:04 Heat of formation + Delta-G solvation = -94.664633 kcal Electronic energy + Delta-G solvation = -27616.465897 eV Core-core repulsion = 23498.930343 eV Total energy + Delta-G solvation = -4117.535554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.98798 -46.96101 -40.65345 -38.84119 -35.31968 -34.15915 -33.62934 -32.31702 -30.69669 -29.74740 -25.76006 -25.42040 -24.35767 -23.96530 -22.64366 -21.48811 -20.23011 -19.92722 -18.21549 -17.67405 -17.22469 -17.07995 -16.27057 -15.82875 -15.65182 -15.39555 -15.18802 -14.62190 -14.40417 -13.99199 -13.85761 -13.35638 -13.31996 -13.15816 -13.07437 -12.95934 -12.71621 -12.48863 -12.36854 -12.10084 -11.91948 -11.83659 -11.54704 -11.41493 -11.20435 -10.97498 -10.93314 -10.87240 -10.69132 -10.19999 -10.10174 -9.86149 -9.76670 -9.51861 -9.35796 -8.88998 -8.52593 -7.05563 -5.87531 -3.15834 2.89661 3.31882 3.38745 3.45361 3.46975 3.74918 4.06221 4.28573 4.33198 4.49889 4.74067 4.91121 4.94938 4.98264 5.00684 5.12576 5.14846 5.30172 5.35564 5.39296 5.44220 5.56711 5.59504 5.63099 5.84826 5.87881 5.88628 5.94364 5.95934 6.00722 6.08403 6.11555 6.26268 6.32241 6.40605 6.61209 6.69435 6.73043 6.94863 7.09612 7.65429 7.88227 8.31812 8.52426 9.42910 9.97833 10.31651 11.35286 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.004525 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.357054 B = 6185.737931 C = 8241.460899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.284 3.716 3 F -0.202 7.202 4 F -0.199 7.199 5 C -0.140 4.140 6 C -0.149 4.149 7 C 0.522 3.478 8 O -0.556 6.556 9 N -0.696 5.696 10 C 0.152 3.848 11 H 0.089 0.911 12 C -0.186 4.186 13 C 0.180 3.820 14 H 0.064 0.936 15 N -0.700 5.700 16 C -0.241 4.241 17 H 0.073 0.927 18 C -0.010 4.010 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.131 4.131 25 C -0.116 4.116 26 C -0.141 4.141 27 C -0.104 4.104 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.409 0.591 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.380 0.620 39 H 0.256 0.744 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.737 4.898 7.398 14.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.248 3.752 3 F -0.183 7.183 4 F -0.180 7.180 5 C -0.179 4.179 6 C -0.189 4.189 7 C 0.308 3.692 8 O -0.435 6.435 9 N -0.348 5.348 10 C 0.046 3.954 11 H 0.107 0.893 12 C -0.228 4.228 13 C 0.068 3.932 14 H 0.082 0.918 15 N -0.340 5.340 16 C -0.372 4.372 17 H 0.091 0.909 18 C -0.206 4.206 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.134 4.134 25 C -0.154 4.154 26 C -0.179 4.179 27 C -0.142 4.142 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.247 0.753 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.215 0.785 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.116 4.477 7.804 15.091 hybrid contribution 0.860 -0.069 -1.335 1.590 sum -11.255 4.408 6.469 13.710 Atomic orbital electron populations 1.22751 0.91653 1.05480 1.05172 1.21191 0.93718 0.75782 0.84502 1.93008 1.90594 1.37799 1.96904 1.93035 1.90535 1.80879 1.53553 1.22350 0.96031 1.03346 0.96152 1.21637 0.95618 1.03186 0.98458 1.20362 0.82394 0.79396 0.87007 1.90647 1.55428 1.49990 1.47480 1.45740 1.06835 1.57273 1.24917 1.21395 0.93197 0.93352 0.87427 0.89280 1.24286 1.01539 0.95577 1.01427 1.21038 0.93825 0.92376 0.85998 0.91832 1.42086 1.54922 1.30999 1.05965 1.19311 1.19602 1.05893 0.92432 0.90879 1.24719 1.00653 0.97978 0.97235 1.69617 1.47218 1.25678 1.15567 0.86108 0.80118 0.79269 0.80613 1.20535 1.21844 1.21836 1.23406 0.95812 0.97084 0.97053 1.22515 1.01852 0.95615 0.95379 1.22856 1.01198 0.96320 0.97489 1.22483 1.01410 0.96163 0.94138 0.89265 0.90135 0.89190 0.88076 0.88210 0.88156 0.87519 0.75303 0.90997 0.90575 0.78538 0.93377 0.89425 0.92002 0.90808 0.91914 0.91674 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.52 9.38 37.16 0.35 -1.17 16 2 C 0.28 3.21 2.11 -26.73 -0.06 3.16 16 3 F -0.20 -2.58 16.54 2.25 0.04 -2.54 16 4 F -0.20 -2.72 16.54 2.25 0.04 -2.69 16 5 C -0.14 -1.65 4.09 -26.73 -0.11 -1.76 16 6 C -0.15 -2.07 5.46 -27.88 -0.15 -2.22 16 7 C 0.52 8.62 7.83 -10.98 -0.09 8.53 16 8 O -0.56 -10.34 15.62 5.56 0.09 -10.25 16 9 N -0.70 -11.81 4.72 -53.37 -0.25 -12.06 16 10 C 0.15 2.53 4.07 -67.48 -0.27 2.26 16 11 H 0.09 1.49 7.54 -51.93 -0.39 1.10 16 12 C -0.19 -3.32 7.68 -25.75 -0.20 -3.52 16 13 C 0.18 3.43 4.35 -67.48 -0.29 3.14 16 14 H 0.06 1.23 8.12 -51.93 -0.42 0.80 16 15 N -0.70 -16.28 4.97 -52.99 -0.26 -16.54 16 16 C -0.24 -6.38 9.98 -15.06 -0.15 -6.53 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -26.59 13.06 55.49 0.72 -25.86 16 20 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 C -0.13 -2.07 0.77 -154.71 -0.12 -2.19 16 25 C -0.12 -1.78 7.18 -26.28 -0.19 -1.97 16 26 C -0.14 -1.79 8.08 -25.75 -0.21 -2.00 16 27 C -0.10 -1.35 7.84 -26.28 -0.21 -1.56 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 33 H 0.10 1.29 7.80 -51.93 -0.41 0.88 16 34 H 0.11 1.57 7.80 -51.93 -0.41 1.17 16 35 H 0.41 7.33 5.94 -40.82 -0.24 7.09 16 36 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.38 9.06 5.39 -40.82 -0.22 8.84 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.06 0.97 7.51 -51.93 -0.39 0.58 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -30.02 370.53 -7.95 -37.97 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -7.09 Total: 15.82 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -1.79 Total: -6.20 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.21 Total: -54.47 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.07 Total: -5.23 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.02 -7.95 -37.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203094396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.699 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds