Wall clock time and date at job start Tue Mar 31 2020 11:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 F 1.39897 * 109.46966 * 2 1 4 4 F 1.39900 * 109.46971 * 239.99321 * 2 1 3 5 5 C 1.52997 * 109.46712 * 119.99975 * 2 1 3 6 6 C 1.53004 * 109.47000 * 179.97438 * 5 2 1 7 7 C 1.50700 * 109.47208 * 179.97438 * 6 5 2 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 6 5 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 6 11 11 H 1.08998 * 112.89218 * 336.34556 * 10 9 7 12 12 C 1.53955 * 113.66485 * 107.81233 * 10 9 7 13 13 C 1.53950 * 87.29825 * 89.73343 * 12 10 9 14 14 H 1.08997 * 113.66122 * 270.26573 * 13 12 10 15 15 N 1.46499 * 113.74574 * 139.21323 * 13 12 10 16 16 C 1.36945 * 119.99378 * 107.77411 * 15 13 12 17 17 H 1.07993 * 120.00132 * 0.02562 * 16 15 13 18 18 C 1.38807 * 119.99576 * 179.97438 * 16 15 13 19 19 N 1.31623 * 120.00519 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99744 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47163 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47082 * 120.00337 * 20 18 16 23 23 H 1.48499 * 109.47270 * 240.00167 * 20 18 16 24 24 C 1.52909 * 113.66115 * 204.99371 * 10 9 7 25 25 C 1.52912 * 121.13510 * 144.70591 * 24 10 9 26 26 C 1.53947 * 86.78509 * 209.38321 * 25 24 10 27 27 C 1.52916 * 121.13473 * 36.15070 * 24 10 9 28 28 H 1.08992 * 109.47177 * 300.00642 * 1 2 3 29 29 H 1.08996 * 109.46807 * 60.00495 * 1 2 3 30 30 H 1.09003 * 109.46627 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47849 * 59.99915 * 5 2 1 32 32 H 1.08998 * 109.47443 * 299.99783 * 5 2 1 33 33 H 1.09009 * 109.46730 * 59.99606 * 6 5 2 34 34 H 1.08998 * 109.46846 * 300.00150 * 6 5 2 35 35 H 0.97000 * 119.99894 * 359.71837 * 9 7 6 36 36 H 1.08999 * 113.58046 * 204.34456 * 12 10 9 37 37 H 1.09003 * 113.57379 * 335.13145 * 12 10 9 38 38 H 0.97000 * 120.00476 * 287.77711 * 15 13 12 39 39 H 0.96992 * 120.00237 * 180.02562 * 19 18 16 40 40 H 1.09004 * 113.66499 * 323.85857 * 25 24 10 41 41 H 1.08999 * 113.66010 * 94.91568 * 25 24 10 42 42 H 1.08999 * 113.58069 * 270.13638 * 26 25 24 43 43 H 1.08997 * 113.65513 * 139.34732 * 26 25 24 44 44 H 1.08999 * 113.65700 * 265.08473 * 27 24 10 45 45 H 1.08997 * 113.66089 * 36.05622 * 27 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0400 -0.7212 1.2492 6 6 3.5700 -0.7218 1.2490 7 6 4.0723 -1.4317 2.4798 8 8 3.2841 -1.8914 3.2788 9 7 5.3974 -1.5503 2.6957 10 6 5.8856 -2.2351 3.8952 11 1 5.1584 -2.2384 4.7071 12 6 6.5026 -3.6165 3.6101 13 6 7.8510 -2.8959 3.4291 14 1 8.0400 -2.5722 2.4056 15 7 8.9856 -3.6103 4.0196 16 6 9.9009 -4.2293 3.2105 17 1 9.7865 -4.1905 2.1374 18 6 10.9761 -4.9057 3.7699 19 7 11.1158 -4.9527 5.0779 20 14 12.2251 -5.7495 2.6664 21 1 11.8445 -5.5498 1.2450 22 1 13.5700 -5.1666 2.9048 23 1 12.2541 -7.2024 2.9721 24 6 7.2850 -1.7948 4.3265 25 6 7.6654 -1.7061 5.8048 26 6 8.6438 -0.5897 5.3968 27 6 7.7380 -0.3420 4.1768 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6767 -1.7489 1.2494 32 1 1.6767 -0.2074 2.1392 33 1 3.9337 0.3058 1.2487 34 1 3.9330 -1.2359 0.3590 35 1 6.0277 -1.1823 2.0568 36 1 6.4795 -4.2896 4.4671 37 1 6.1300 -4.0803 2.6968 38 1 9.0885 -3.6449 4.9835 39 1 11.8674 -5.4250 5.4687 40 1 6.8531 -1.3632 6.4458 41 1 8.1573 -2.6016 6.1845 42 1 9.6371 -0.9545 5.1354 43 1 8.6707 0.2455 6.0966 44 1 8.2878 -0.1479 3.2559 45 1 6.9457 0.3842 4.3587 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203094397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:07 Heat of formation + Delta-G solvation = -97.569530 kcal Electronic energy + Delta-G solvation = -26897.649996 eV Core-core repulsion = 22779.988476 eV Total energy + Delta-G solvation = -4117.661520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.26230 -47.23417 -40.64553 -39.08652 -35.10012 -34.39135 -34.05213 -32.34144 -30.93503 -29.76972 -25.83549 -25.42109 -24.38189 -24.12363 -22.27817 -21.74236 -20.68319 -19.98323 -17.99564 -17.94288 -17.61438 -17.01204 -16.51183 -16.13489 -15.92770 -15.61705 -15.11215 -14.77958 -14.29514 -14.23539 -13.85236 -13.62237 -13.54082 -13.42456 -13.39388 -12.93716 -12.63034 -12.57259 -12.46593 -12.13646 -12.01753 -11.80685 -11.72073 -11.50785 -11.36601 -11.16199 -10.91419 -10.83601 -10.61139 -10.16944 -10.14479 -9.90238 -9.84368 -9.62224 -9.39959 -8.87441 -8.70120 -6.99391 -5.82239 -3.10810 2.62256 3.06271 3.39916 3.46066 3.47993 3.50386 3.81502 4.04329 4.09494 4.54779 4.61672 4.73745 4.78410 4.85537 5.01835 5.07328 5.11794 5.15133 5.23504 5.26228 5.27989 5.41479 5.43099 5.59768 5.64306 5.68508 5.82985 5.94506 6.00068 6.04923 6.10480 6.17008 6.30136 6.41125 6.48651 6.56218 6.63575 6.87938 6.92313 7.04246 7.58585 7.66293 8.24995 8.36541 9.48245 10.05420 10.40153 11.40036 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.018881 B = 0.002737 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.608378 B =10226.971386 C =10970.243163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.285 3.715 3 F -0.202 7.202 4 F -0.201 7.201 5 C -0.143 4.143 6 C -0.148 4.148 7 C 0.517 3.483 8 O -0.546 6.546 9 N -0.702 5.702 10 C 0.128 3.872 11 H 0.095 0.905 12 C -0.175 4.175 13 C 0.192 3.808 14 H 0.076 0.924 15 N -0.708 5.708 16 C -0.243 4.243 17 H 0.071 0.929 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 C -0.122 4.122 25 C -0.110 4.110 26 C -0.131 4.131 27 C -0.126 4.126 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.401 0.599 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.387 0.613 39 H 0.255 0.745 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.544 12.506 -7.088 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.249 3.751 3 F -0.183 7.183 4 F -0.182 7.182 5 C -0.181 4.181 6 C -0.188 4.188 7 C 0.303 3.697 8 O -0.424 6.424 9 N -0.351 5.351 10 C 0.023 3.977 11 H 0.113 0.887 12 C -0.217 4.217 13 C 0.079 3.921 14 H 0.093 0.907 15 N -0.346 5.346 16 C -0.375 4.375 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.124 4.124 25 C -0.148 4.148 26 C -0.168 4.168 27 C -0.163 4.163 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.235 0.765 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.223 0.777 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.924 12.099 -6.673 23.431 hybrid contribution 1.175 -0.332 -0.706 1.410 sum -17.749 11.766 -7.379 22.537 Atomic orbital electron populations 1.22758 0.91457 1.05616 1.05338 1.21202 0.93937 0.75708 0.84298 1.93010 1.90580 1.37823 1.96891 1.93017 1.90565 1.80924 1.53724 1.22372 0.95820 1.03575 0.96343 1.21643 0.96033 1.03017 0.98087 1.20386 0.82508 0.79576 0.87189 1.90694 1.55269 1.49208 1.47255 1.45612 1.06549 1.57979 1.24943 1.21729 0.94801 0.93996 0.87195 0.88689 1.24271 0.99916 0.95685 1.01815 1.21277 0.86771 0.89411 0.94629 0.90661 1.42408 1.25069 1.60708 1.06455 1.19323 1.02154 1.25751 0.90226 0.91132 1.24746 0.99010 1.01274 0.95715 1.69660 1.31990 1.47443 1.08776 0.86140 0.81432 0.79141 0.79593 1.20561 1.21876 1.21861 1.23592 0.94486 0.96147 0.98205 1.22448 0.98587 0.99850 0.93878 1.22739 0.99096 0.97895 0.97113 1.22639 0.98915 0.95760 0.99013 0.89138 0.90065 0.89103 0.87908 0.87970 0.88123 0.88033 0.76453 0.89619 0.92320 0.77697 0.93482 0.90812 0.90287 0.89175 0.92505 0.91747 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.05 9.38 37.16 0.35 -0.70 16 2 C 0.28 2.29 2.11 -26.73 -0.06 2.23 16 3 F -0.20 -1.92 16.54 2.25 0.04 -1.88 16 4 F -0.20 -1.97 16.54 2.25 0.04 -1.93 16 5 C -0.14 -1.20 4.09 -26.73 -0.11 -1.31 16 6 C -0.15 -1.35 5.46 -27.88 -0.15 -1.50 16 7 C 0.52 6.53 7.83 -10.98 -0.09 6.44 16 8 O -0.55 -8.80 15.58 5.55 0.09 -8.71 16 9 N -0.70 -8.77 5.05 -53.37 -0.27 -9.03 16 10 C 0.13 1.93 4.12 -67.48 -0.28 1.65 16 11 H 0.10 1.54 7.46 -51.93 -0.39 1.15 16 12 C -0.17 -3.05 7.69 -25.75 -0.20 -3.25 16 13 C 0.19 3.59 4.27 -67.48 -0.29 3.30 16 14 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 15 N -0.71 -16.83 5.33 -52.99 -0.28 -17.11 16 16 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 20 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 C -0.12 -1.90 0.92 -154.71 -0.14 -2.04 16 25 C -0.11 -1.74 7.47 -26.28 -0.20 -1.93 16 26 C -0.13 -2.00 8.08 -25.75 -0.21 -2.21 16 27 C -0.13 -1.75 7.49 -26.27 -0.20 -1.94 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.10 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.10 0.80 7.80 -51.92 -0.41 0.40 16 34 H 0.10 0.85 7.80 -51.93 -0.41 0.45 16 35 H 0.40 4.25 8.62 -40.82 -0.35 3.90 16 36 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.39 9.78 5.92 -40.82 -0.24 9.54 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.08 1.44 6.42 -51.93 -0.33 1.10 16 42 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -31.15 373.24 -8.03 -39.18 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -7.16 Total: 11.90 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.81 Total: -8.34 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.17 Total: -52.80 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.07 Total: -3.81 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.15 -8.03 -39.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203094397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.390 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds