Wall clock time and date at job start Tue Mar 31 2020 11:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39902 * 109.47016 * 2 1 4 4 F 1.39904 * 109.47069 * 240.00336 * 2 1 3 5 5 C 1.53001 * 109.47583 * 120.00334 * 2 1 3 6 6 C 1.50701 * 115.54807 * 294.57623 * 5 2 1 7 7 O 1.21280 * 120.00124 * 98.92067 * 6 5 2 8 8 N 1.34778 * 119.99760 * 278.92630 * 6 5 2 9 9 C 1.46928 * 120.62801 * 175.00364 * 8 6 5 10 10 C 1.53190 * 108.77382 * 233.62715 * 9 8 6 11 11 C 1.53035 * 109.31429 * 305.36555 * 10 9 8 12 12 C 1.53003 * 109.46220 * 181.38523 * 11 10 9 13 13 N 1.46503 * 109.47221 * 174.99952 * 12 11 10 14 14 C 1.36936 * 120.00108 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00029 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99897 * 180.02562 * 14 13 12 17 17 N 1.31618 * 120.00082 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99679 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47539 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46913 * 119.99775 * 18 16 14 21 21 H 1.48506 * 109.47096 * 239.99346 * 18 16 14 22 22 C 1.53040 * 109.53868 * 61.36431 * 11 10 9 23 23 C 1.46924 * 120.63122 * 355.01989 * 8 6 5 24 24 C 1.52994 * 117.51680 * 80.27369 * 5 2 1 25 25 C 1.52998 * 60.00155 * 107.48332 * 24 5 2 26 26 H 1.09002 * 109.46923 * 295.81818 * 1 2 3 27 27 H 1.08995 * 109.47099 * 55.81566 * 1 2 3 28 28 H 1.08998 * 109.47195 * 175.81880 * 1 2 3 29 29 H 1.08998 * 109.58519 * 113.83925 * 9 8 6 30 30 H 1.08998 * 109.58816 * 353.41308 * 9 8 6 31 31 H 1.09002 * 109.49962 * 185.41262 * 10 9 8 32 32 H 1.09007 * 109.49850 * 65.31796 * 10 9 8 33 33 H 1.09002 * 109.46379 * 301.34459 * 11 10 9 34 34 H 1.08997 * 109.47024 * 294.99947 * 12 11 10 35 35 H 1.08997 * 109.46916 * 54.99885 * 12 11 10 36 36 H 0.97005 * 119.99965 * 359.97438 * 13 12 11 37 37 H 0.96998 * 119.99999 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.50156 * 58.59123 * 22 11 10 39 39 H 1.09003 * 109.50274 * 178.68649 * 22 11 10 40 40 H 1.08992 * 109.58741 * 246.16046 * 23 8 6 41 41 H 1.09001 * 109.58722 * 6.58769 * 23 8 6 42 42 H 1.09007 * 117.49759 * 214.97222 * 24 5 2 43 43 H 1.09000 * 117.50008 * 359.97438 * 24 5 2 44 44 H 1.08993 * 117.49792 * 252.51378 * 25 24 5 45 45 H 1.08999 * 117.49652 * 107.48749 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0401 -0.7213 1.2492 6 6 1.7236 -0.0512 2.5614 7 8 0.7832 -0.4323 3.2257 8 7 2.4857 0.9717 2.9966 9 6 2.1267 1.7059 4.2177 10 6 2.0588 3.2012 3.8919 11 6 3.3808 3.6419 3.2593 12 6 3.3295 5.1423 2.9641 13 7 4.6347 5.5877 2.4698 14 6 4.8292 6.9020 2.1381 15 1 4.0205 7.6103 2.2413 16 6 6.0658 7.3238 1.6693 17 7 7.0515 6.4607 1.5441 18 14 6.3312 9.1168 1.2175 19 1 5.0761 9.8764 1.4477 20 1 7.4151 9.6841 2.0593 21 1 6.7133 9.2152 -0.2141 22 6 3.6055 2.8732 1.9552 23 6 3.6909 1.3741 2.2590 24 6 2.0596 -2.2509 1.2237 25 6 3.3712 -1.4676 1.1399 26 1 -0.3633 0.4476 0.9251 27 1 -0.3633 0.5774 -0.8501 28 1 -0.3633 -1.0249 -0.0749 29 1 2.8825 1.5327 4.9837 30 1 1.1553 1.3657 4.5763 31 1 1.8880 3.7659 4.8084 32 1 1.2423 3.3847 3.1935 33 1 4.1998 3.4354 3.9483 34 1 2.5687 5.3382 2.2085 35 1 3.0826 5.6840 3.8772 36 1 5.3615 4.9517 2.3782 37 1 7.9157 6.7556 1.2168 38 1 2.7745 3.0597 1.2750 39 1 4.5357 3.2042 1.4933 40 1 4.5743 1.1739 2.8653 41 1 3.7516 0.8149 1.3253 42 1 1.8437 -2.7726 2.1561 43 1 1.7086 -2.7437 0.3170 44 1 3.8833 -1.4450 0.1781 45 1 4.0181 -1.4740 2.0172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206293564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:14 Heat of formation + Delta-G solvation = -102.365205 kcal Electronic energy + Delta-G solvation = -28330.997834 eV Core-core repulsion = 24213.128358 eV Total energy + Delta-G solvation = -4117.869476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.23396 -47.21060 -40.60954 -38.11747 -36.79521 -34.93729 -32.81749 -31.54935 -31.10178 -30.28998 -27.01138 -25.37050 -23.90987 -23.42605 -22.77048 -22.58834 -21.23571 -19.96167 -19.15545 -17.87969 -17.59044 -17.06078 -16.61587 -16.31344 -15.87810 -15.03055 -14.84055 -14.62450 -14.26310 -14.16891 -13.93192 -13.73619 -13.56870 -13.44994 -13.36447 -13.09666 -12.82775 -12.72825 -12.50207 -12.36154 -12.22869 -12.03817 -11.91254 -11.76057 -11.14988 -10.98705 -10.96581 -10.84213 -10.68338 -10.39522 -10.31128 -10.25176 -9.98022 -9.82086 -9.63813 -8.85944 -8.68015 -6.89387 -5.75489 -3.03259 2.21081 2.70606 3.06831 3.39752 3.44127 3.50008 3.52043 3.81689 3.98036 4.15116 4.20467 4.57865 4.60221 4.63672 4.90472 4.99101 5.05063 5.13956 5.19599 5.22514 5.26207 5.36141 5.40184 5.44830 5.55292 5.57165 5.61648 5.64152 5.65876 5.78709 5.95810 5.98517 6.12932 6.21114 6.30839 6.41468 6.54655 6.67281 6.82709 6.95208 7.26419 7.72340 7.94529 8.43962 9.55221 10.13624 10.48375 11.47658 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.019152 B = 0.003431 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.599409 B = 8158.914322 C = 8769.518511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.333 3.667 3 F -0.183 7.183 4 F -0.194 7.194 5 C -0.217 4.217 6 C 0.559 3.441 7 O -0.537 6.537 8 N -0.594 5.594 9 C 0.113 3.887 10 C -0.126 4.126 11 C -0.094 4.094 12 C 0.159 3.841 13 N -0.732 5.732 14 C -0.237 4.237 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.905 3.095 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.124 4.124 23 C 0.104 3.896 24 C -0.124 4.124 25 C -0.150 4.150 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.305 -19.089 -0.152 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.297 3.703 3 F -0.164 7.164 4 F -0.175 7.175 5 C -0.221 4.221 6 C 0.345 3.655 7 O -0.414 6.414 8 N -0.325 5.325 9 C -0.009 4.009 10 C -0.164 4.164 11 C -0.113 4.113 12 C 0.031 3.969 13 N -0.376 5.376 14 C -0.368 4.368 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.583 5.583 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.162 4.162 23 C -0.019 4.019 24 C -0.161 4.161 25 C -0.186 4.186 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.811 -19.067 0.159 22.430 hybrid contribution 0.696 1.049 -0.494 1.352 sum -11.116 -18.018 -0.335 21.174 Atomic orbital electron populations 1.22708 0.90682 1.05627 1.05625 1.20005 0.93809 0.75456 0.81077 1.93093 1.90329 1.36392 1.96570 1.93010 1.90636 1.81054 1.52756 1.22332 1.07614 0.97561 0.94601 1.18900 0.82088 0.79744 0.84817 1.90687 1.29725 1.63759 1.57219 1.48082 1.26316 1.31591 1.26540 1.21687 1.01911 0.91682 0.85613 1.21914 0.98659 0.94271 1.01575 1.21316 0.96682 0.96652 0.96658 1.20659 0.89604 0.90406 0.96222 1.42378 1.08623 1.08055 1.78541 1.19283 0.96163 0.85873 1.35501 0.91228 1.24716 0.96154 0.97735 1.02418 1.69661 1.02657 1.33028 1.52967 0.86133 0.77554 0.84861 0.77761 1.20598 1.21911 1.21894 1.21929 1.04115 0.92167 0.97985 1.22005 0.85910 0.97408 0.96529 1.23075 0.99451 0.88588 1.05025 1.23269 0.89821 1.00273 1.05285 0.89089 0.89671 0.89084 0.91261 0.89251 0.90531 0.91551 0.91061 0.96416 0.96431 0.78278 0.93622 0.91111 0.89465 0.91222 0.89597 0.87029 0.87035 0.86655 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.76 9.31 37.16 0.35 -1.42 16 2 C 0.33 3.68 2.05 -26.73 -0.05 3.62 16 3 F -0.18 -2.46 13.26 2.25 0.03 -2.43 16 4 F -0.19 -2.14 15.65 2.25 0.04 -2.11 16 5 C -0.22 -2.28 0.72 -155.66 -0.11 -2.39 16 6 C 0.56 7.18 6.01 -10.98 -0.07 7.11 16 7 O -0.54 -8.16 16.44 5.56 0.09 -8.07 16 8 N -0.59 -7.45 2.97 -172.77 -0.51 -7.96 16 9 C 0.11 1.36 6.42 -3.71 -0.02 1.34 16 10 C -0.13 -1.63 5.36 -26.61 -0.14 -1.77 16 11 C -0.09 -1.47 2.19 -90.58 -0.20 -1.67 16 12 C 0.16 3.17 5.65 -4.04 -0.02 3.15 16 13 N -0.73 -18.36 5.32 -59.91 -0.32 -18.68 16 14 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 15 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 16 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 18 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 C -0.12 -1.90 5.06 -26.61 -0.13 -2.03 16 23 C 0.10 1.30 5.18 -3.71 -0.02 1.28 16 24 C -0.12 -1.02 9.62 -26.74 -0.26 -1.27 16 25 C -0.15 -1.27 7.80 -26.73 -0.21 -1.48 16 26 H 0.09 0.95 7.59 -51.93 -0.39 0.55 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.10 7.04 -51.93 -0.37 0.74 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.38 9.98 6.84 -40.82 -0.28 9.70 16 37 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.07 1.15 6.75 -51.93 -0.35 0.80 16 39 H 0.09 1.54 7.15 -51.93 -0.37 1.16 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 1.02 4.16 -51.93 -0.22 0.80 16 42 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.11 0.76 7.94 -51.93 -0.41 0.34 16 44 H 0.12 0.92 7.62 -51.93 -0.40 0.53 16 45 H 0.11 0.87 8.13 -51.93 -0.42 0.45 16 LS Contribution 359.21 15.07 5.41 5.41 Total: -1.00 -32.05 359.21 -7.68 -39.73 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.98 Total: 6.86 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.14 Total: -2.85 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.11 Total: -54.01 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.07 Total: -4.54 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.05 -7.68 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206293564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.632 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds