Wall clock time and date at job start Tue Mar 31 2020 11:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50706 * 112.84932 * 2 1 4 4 O 1.21283 * 119.99643 * 108.42487 * 3 2 1 5 5 N 1.34777 * 119.99982 * 288.70792 * 3 2 1 6 6 C 1.46926 * 120.62938 * 4.57021 * 5 3 2 7 7 C 1.52762 * 109.00552 * 233.58966 * 6 5 3 8 8 C 1.53045 * 109.38407 * 305.58786 * 7 6 5 9 9 C 1.52999 * 109.45704 * 181.26618 * 8 7 6 10 10 N 1.46497 * 109.47260 * 64.93576 * 9 8 7 11 11 C 1.36940 * 119.99859 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99696 * 359.97438 * 11 10 9 13 13 C 1.38814 * 120.00320 * 179.97438 * 11 10 9 14 14 N 1.31622 * 119.99474 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00429 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47053 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47238 * 119.99410 * 15 13 11 18 18 H 1.48494 * 109.47244 * 240.00116 * 15 13 11 19 19 C 1.53032 * 109.53502 * 61.24439 * 8 7 6 20 20 C 1.46921 * 120.62852 * 184.85920 * 5 3 2 21 21 C 1.53778 * 113.69036 * 131.26508 * 2 1 3 22 22 C 1.53783 * 87.08108 * 89.13119 * 21 2 1 23 23 F 1.39898 * 113.61183 * 270.88642 * 22 21 2 24 24 F 1.39890 * 113.61807 * 139.98246 * 22 21 2 25 25 C 1.53772 * 113.61712 * 228.80508 * 2 1 3 26 26 H 1.09004 * 109.46665 * 64.01599 * 1 2 3 27 27 H 1.09000 * 109.47005 * 184.01102 * 1 2 3 28 28 H 1.08995 * 109.47236 * 304.01670 * 1 2 3 29 29 H 1.08995 * 109.58553 * 353.42290 * 6 5 3 30 30 H 1.09000 * 109.58272 * 113.84863 * 6 5 3 31 31 H 1.09005 * 109.55998 * 185.55774 * 7 6 5 32 32 H 1.08994 * 109.36292 * 65.50123 * 7 6 5 33 33 H 1.09002 * 109.45930 * 301.22206 * 8 7 6 34 34 H 1.09009 * 109.46794 * 184.93466 * 9 8 7 35 35 H 1.08996 * 109.46919 * 304.92786 * 9 8 7 36 36 H 0.96989 * 120.00245 * 359.97438 * 10 9 8 37 37 H 0.97000 * 119.99807 * 180.02562 * 14 13 11 38 38 H 1.09006 * 109.49595 * 178.68692 * 19 8 7 39 39 H 1.09001 * 109.50323 * 58.58873 * 19 8 7 40 40 H 1.09006 * 109.58648 * 246.14924 * 20 5 3 41 41 H 1.08998 * 109.59103 * 6.57273 * 20 5 3 42 42 H 1.08998 * 113.61794 * 203.67703 * 21 2 1 43 43 H 1.08997 * 113.61697 * 334.58093 * 21 2 1 44 44 H 1.09003 * 113.61823 * 25.34391 * 25 2 1 45 45 H 1.09002 * 113.62108 * 156.17073 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3888 0.0000 4 8 2.6566 1.8187 0.9965 5 7 2.0319 2.1552 -1.1055 6 6 1.2877 1.6906 -2.2841 7 6 2.1977 1.7660 -3.5087 8 6 2.7589 3.1840 -3.6380 9 6 3.6456 3.2697 -4.8819 10 7 2.8276 3.0643 -6.0798 11 6 3.4086 3.0971 -7.3194 12 1 4.4696 3.2748 -7.4139 13 6 2.6337 2.9020 -8.4545 14 7 1.3406 2.6850 -8.3392 15 14 3.4259 2.9474 -10.1455 16 1 4.8812 3.2070 -10.0035 17 1 3.2193 1.6429 -10.8241 18 1 2.8073 4.0291 -10.9531 19 6 3.5878 3.5214 -2.3967 20 6 2.6889 3.4683 -1.1573 21 6 2.1479 -0.9288 1.0585 22 6 2.0951 -2.0419 -0.0012 23 9 0.8944 -2.7598 -0.0004 24 9 3.2237 -2.8685 -0.0025 25 6 2.1461 -0.9280 -1.0602 26 1 -0.3633 0.4503 -0.9238 27 1 -0.3633 -1.0252 0.0719 28 1 -0.3633 0.5749 0.8518 29 1 0.9677 0.6599 -2.1312 30 1 0.4163 2.3266 -2.4400 31 1 1.6268 1.5177 -4.4035 32 1 3.0190 1.0589 -3.3927 33 1 1.9362 3.8932 -3.7291 34 1 4.1149 4.2526 -4.9265 35 1 4.4166 2.5009 -4.8321 36 1 1.8748 2.9044 -5.9948 37 1 0.7992 2.5482 -9.1323 38 1 4.0064 4.5226 -2.4998 39 1 4.3961 2.7978 -2.2911 40 1 1.9341 4.2523 -1.2195 41 1 3.2931 3.6102 -0.2613 42 1 3.1609 -0.6487 1.3474 43 1 1.4974 -1.1093 1.9142 44 1 1.4940 -1.1080 -1.9149 45 1 3.1581 -0.6469 -1.3516 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206867952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:44 Heat of formation + Delta-G solvation = -106.685127 kcal Electronic energy + Delta-G solvation = -27773.296587 eV Core-core repulsion = 23655.239785 eV Total energy + Delta-G solvation = -4118.056802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.13181 -47.44362 -41.02617 -38.42407 -37.27976 -35.01583 -32.92903 -31.36085 -30.38744 -29.60178 -26.97094 -26.72190 -24.89666 -23.50905 -23.26639 -21.96704 -20.81371 -19.99388 -18.81070 -18.10620 -17.19922 -17.06750 -16.86935 -16.20850 -15.64880 -15.43720 -14.83568 -14.53396 -14.49161 -14.29335 -14.07147 -13.92219 -13.87219 -13.70364 -13.60604 -13.23514 -12.77858 -12.71500 -12.53297 -12.48912 -12.32865 -12.14917 -11.83095 -11.58272 -11.40054 -11.17548 -11.03236 -10.88380 -10.76961 -10.45698 -10.37357 -10.31453 -10.00842 -9.78557 -9.69195 -8.91172 -8.72409 -6.95234 -5.80775 -3.08829 2.37739 2.75279 3.13120 3.40151 3.40738 3.46952 3.48732 3.78342 3.84134 4.01563 4.37390 4.55643 4.68594 4.77657 4.91949 4.99555 5.02267 5.06648 5.10518 5.18470 5.23612 5.30092 5.36035 5.44884 5.47561 5.51373 5.58739 5.63027 5.72818 5.80808 5.88802 5.90268 6.03389 6.12230 6.22143 6.36039 6.39254 6.56904 6.75447 6.86425 7.25006 7.67678 7.96250 8.38711 9.50129 10.07690 10.42332 11.42263 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016626 B = 0.003172 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.685081 B = 8824.263710 C = 9706.802852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 C 0.536 3.464 4 O -0.542 6.542 5 N -0.601 5.601 6 C 0.096 3.904 7 C -0.127 4.127 8 C -0.094 4.094 9 C 0.158 3.842 10 N -0.732 5.732 11 C -0.238 4.238 12 H 0.070 0.930 13 C -0.014 4.014 14 N -0.934 5.934 15 Si 0.906 3.094 16 H -0.281 1.281 17 H -0.291 1.291 18 H -0.292 1.292 19 C -0.126 4.126 20 C 0.112 3.888 21 C -0.136 4.136 22 C 0.257 3.743 23 F -0.176 7.176 24 F -0.187 7.187 25 C -0.155 4.155 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.755 -5.879 19.523 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.104 4.104 3 C 0.324 3.676 4 O -0.420 6.420 5 N -0.333 5.333 6 C -0.026 4.026 7 C -0.165 4.165 8 C -0.113 4.113 9 C 0.030 3.970 10 N -0.376 5.376 11 C -0.370 4.370 12 H 0.088 0.912 13 C -0.209 4.209 14 N -0.583 5.583 15 Si 0.737 3.263 16 H -0.206 1.206 17 H -0.219 1.219 18 H -0.219 1.219 19 C -0.165 4.165 20 C -0.010 4.010 21 C -0.174 4.174 22 C 0.220 3.780 23 F -0.156 7.156 24 F -0.168 7.168 25 C -0.193 4.193 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.138 0.862 43 H 0.119 0.881 44 H 0.126 0.874 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.341 -5.661 19.913 20.745 hybrid contribution 0.051 -0.225 -1.179 1.202 sum -1.290 -5.885 18.733 19.679 Atomic orbital electron populations 1.21871 0.89860 1.04385 1.03769 1.21802 0.98164 0.92591 0.97867 1.19932 0.79134 0.85828 0.82754 1.90690 1.45058 1.73554 1.32682 1.48095 1.52183 1.18742 1.14278 1.22067 0.94896 1.00686 0.84986 1.21878 0.99604 0.97689 0.97304 1.21304 0.98694 0.96573 0.94703 1.20666 0.93056 0.97549 0.85680 1.42372 1.07807 1.86765 1.00683 1.19280 0.93062 1.40833 0.83800 0.91217 1.24718 0.95615 1.02813 0.97800 1.69658 1.04335 1.56073 1.28225 0.86133 0.78297 0.77201 0.84672 1.20580 1.21861 1.21874 1.21920 0.98186 1.02504 0.93863 1.21661 0.96303 0.83452 0.99552 1.24008 1.05154 0.91017 0.97231 1.21943 0.71856 0.83198 1.00991 1.92997 1.44927 1.80473 1.97242 1.93025 1.50779 1.75784 1.97216 1.24325 1.05143 0.92101 0.97697 0.90535 0.90046 0.91051 0.89323 0.90907 0.89176 0.91764 0.90927 0.96373 0.96440 0.78295 0.93581 0.90538 0.91596 0.91362 0.89248 0.86160 0.88138 0.87423 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.71 37.16 0.32 -0.76 16 2 C -0.10 -0.92 0.70 -154.85 -0.11 -1.03 16 3 C 0.54 6.32 6.64 -10.98 -0.07 6.24 16 4 O -0.54 -8.06 15.74 5.55 0.09 -7.97 16 5 N -0.60 -6.70 2.98 -173.03 -0.52 -7.21 16 6 C 0.10 1.00 5.14 -3.93 -0.02 0.98 16 7 C -0.13 -1.66 5.23 -26.83 -0.14 -1.80 16 8 C -0.09 -1.35 2.19 -90.58 -0.20 -1.55 16 9 C 0.16 3.00 5.65 -4.04 -0.02 2.97 16 10 N -0.73 -17.64 5.32 -59.91 -0.32 -17.96 16 11 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 12 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 13 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 14 N -0.93 -27.44 13.06 55.49 0.72 -26.71 16 15 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 C -0.13 -1.51 5.36 -26.61 -0.14 -1.65 16 20 C 0.11 1.27 6.42 -3.71 -0.02 1.24 16 21 C -0.14 -1.21 6.67 -25.92 -0.17 -1.38 16 22 C 0.26 2.44 3.27 -25.92 -0.08 2.36 16 23 F -0.18 -1.76 15.48 2.25 0.03 -1.73 16 24 F -0.19 -2.11 17.41 2.25 0.04 -2.07 16 25 C -0.15 -1.36 5.56 -25.92 -0.14 -1.50 16 26 H 0.08 0.54 6.03 -51.93 -0.31 0.23 16 27 H 0.08 0.58 6.15 -51.93 -0.32 0.27 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.77 3.10 -51.93 -0.16 0.61 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 1.39 7.15 -51.93 -0.37 1.01 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.02 0.36 8.14 -51.92 -0.42 -0.07 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.38 9.56 6.84 -40.82 -0.28 9.28 16 37 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.06 7.04 -51.93 -0.37 0.69 16 42 H 0.12 1.13 7.83 -51.93 -0.41 0.72 16 43 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 44 H 0.11 0.84 7.09 -51.93 -0.37 0.47 16 45 H 0.12 1.07 8.09 -51.93 -0.42 0.65 16 LS Contribution 354.74 15.07 5.35 5.35 Total: -1.00 -31.41 354.74 -7.46 -38.87 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.78 Total: 5.45 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.05 Total: -3.03 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.11 Total: -51.89 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.09 Total: -7.97 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.07 Total: -3.80 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.41 -7.46 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206867952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.817 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds