Wall clock time and date at job start Tue Mar 31 2020 11:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47017 * 2 1 4 4 H 1.08998 * 109.46949 * 304.92214 * 3 2 1 5 5 C 1.52989 * 109.47075 * 184.92196 * 3 2 1 6 6 C 1.52999 * 109.47501 * 65.00144 * 5 3 2 7 7 F 1.39905 * 109.47130 * 64.99449 * 6 5 3 8 8 F 1.39896 * 109.47390 * 184.99766 * 6 5 3 9 9 C 1.50697 * 109.47031 * 64.92001 * 3 2 1 10 10 O 1.21277 * 120.00128 * 35.12505 * 9 3 2 11 11 N 1.34781 * 119.99981 * 215.12779 * 9 3 2 12 12 C 1.47287 * 136.54248 * 354.92736 * 11 9 3 13 13 C 1.54086 * 87.60714 * 151.41355 * 12 11 9 14 14 H 1.08994 * 115.04647 * 141.62955 * 13 12 11 15 15 C 1.53065 * 111.39113 * 273.97833 * 13 12 11 16 16 C 1.53147 * 109.21482 * 142.39520 * 15 13 12 17 17 N 1.46542 * 108.25145 * 301.59020 * 16 15 13 18 18 C 1.36942 * 119.73449 * 236.43820 * 17 16 15 19 19 H 1.08002 * 120.00003 * 27.37148 * 18 17 16 20 20 C 1.38814 * 119.99795 * 207.36641 * 18 17 16 21 21 N 1.31617 * 119.99873 * 10.73329 * 20 18 17 22 22 Si 1.86795 * 119.99899 * 190.73359 * 20 18 17 23 23 H 1.48501 * 109.47187 * 59.99771 * 22 20 18 24 24 H 1.48497 * 109.47187 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47120 * 300.00081 * 22 20 18 26 26 C 1.45691 * 120.52206 * 56.42117 * 17 16 15 27 27 C 1.46472 * 136.54563 * 174.96951 * 11 9 3 28 28 H 1.09000 * 111.44277 * 96.33589 * 27 11 9 29 29 H 1.09003 * 109.47019 * 54.67357 * 1 2 3 30 30 H 1.09000 * 109.47177 * 174.67578 * 1 2 3 31 31 H 1.09000 * 109.47448 * 294.67590 * 1 2 3 32 32 H 1.08996 * 109.47067 * 240.00145 * 2 1 3 33 33 H 1.08999 * 109.47222 * 119.99593 * 2 1 3 34 34 H 1.09001 * 109.46944 * 184.99911 * 5 3 2 35 35 H 1.08998 * 109.47624 * 304.99740 * 5 3 2 36 36 H 1.09003 * 109.47035 * 304.99838 * 6 5 3 37 37 H 1.08999 * 113.53343 * 266.09361 * 12 11 9 38 38 H 1.09001 * 113.52912 * 36.73642 * 12 11 9 39 39 H 1.08997 * 109.51138 * 262.31774 * 15 13 12 40 40 H 1.09005 * 109.51686 * 22.47468 * 15 13 12 41 41 H 1.09008 * 109.70526 * 61.27682 * 16 15 13 42 42 H 1.09001 * 109.71216 * 181.85460 * 16 15 13 43 43 H 0.96998 * 119.99796 * 179.97438 * 21 20 18 44 44 H 1.09004 * 108.79036 * 199.11362 * 26 17 16 45 45 H 1.08997 * 108.79543 * 80.90100 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6064 1.9812 -0.8426 5 6 3.5649 1.4444 -0.1238 6 6 3.9668 0.8730 -1.4850 7 9 3.5121 1.7220 -2.4998 8 9 5.3602 0.7685 -1.5538 9 6 1.6396 2.1169 1.2868 10 8 1.6101 1.4827 2.3201 11 7 1.3142 3.4248 1.2894 12 6 1.3106 4.5276 0.3130 13 6 0.1493 5.1471 1.1141 14 1 0.1775 6.2331 1.2027 15 6 -1.2013 4.5831 0.6661 16 6 -2.1074 4.4137 1.8891 17 7 -1.4380 3.5173 2.8357 18 6 -2.0714 2.3786 3.2568 19 1 -2.8047 1.9026 2.6227 20 6 -1.7708 1.8360 4.4987 21 7 -1.0430 2.5192 5.3566 22 14 -2.3991 0.1364 4.9522 23 1 -1.8698 -0.8607 3.9874 24 1 -1.9441 -0.2101 6.3226 25 1 -3.8834 0.1291 4.9073 26 6 -0.1038 3.8280 3.3318 27 6 0.8051 4.3919 2.2645 28 1 1.6137 4.9697 2.7123 29 1 -0.3633 0.5942 -0.8385 30 1 -0.3633 -1.0232 -0.0954 31 1 -0.3634 0.4290 0.9338 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9354 2.4656 -0.0346 35 1 3.9945 0.8316 0.6687 36 1 3.5218 -0.1141 -1.6104 37 1 2.2204 5.1277 0.3310 38 1 1.0284 4.2172 -0.6930 39 1 -1.6670 5.2708 -0.0396 40 1 -1.0511 3.6153 0.1875 41 1 -2.2770 5.3830 2.3580 42 1 -3.0603 3.9814 1.5837 43 1 -0.8333 2.1403 6.2245 44 1 0.3441 2.9169 3.7288 45 1 -0.1900 4.5548 4.1395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221611283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:13 Heat of formation + Delta-G solvation = -85.386945 kcal Electronic energy + Delta-G solvation = -28971.817291 eV Core-core repulsion = 24854.684047 eV Total energy + Delta-G solvation = -4117.133244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.11873 -47.11900 -40.61427 -38.38058 -35.24971 -35.18664 -32.14704 -31.19248 -30.12954 -29.21438 -26.99984 -26.26114 -23.84886 -23.17477 -23.00775 -21.49232 -20.91539 -19.37016 -18.00974 -17.68876 -17.48209 -16.90616 -16.43093 -15.85637 -15.59980 -15.27421 -14.32585 -14.30454 -14.04970 -13.89879 -13.69240 -13.61411 -13.48415 -13.26583 -13.09685 -12.88971 -12.56812 -12.46372 -12.30965 -11.93450 -11.83739 -11.46710 -11.31975 -11.09193 -11.03456 -10.75687 -10.69610 -10.63613 -10.61957 -10.46795 -10.20051 -9.86450 -9.79214 -9.51957 -8.92206 -8.31423 -8.10766 -6.56189 -5.65452 -3.10577 3.06263 3.23975 3.45954 3.51630 3.52953 3.69989 4.02618 4.33182 4.38506 4.58720 4.68540 4.73797 4.82186 5.04386 5.14489 5.28005 5.44112 5.45706 5.46137 5.51090 5.55577 5.57112 5.62356 5.73501 5.84023 5.90215 5.91286 6.07599 6.14730 6.18634 6.31535 6.38352 6.40069 6.53160 6.60478 6.67100 6.79428 7.00601 7.50731 7.78642 7.93986 8.34261 8.58860 8.75540 9.36242 9.99544 10.48260 11.42332 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.005112 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.838403 B = 5475.940718 C = 6463.881513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.101 4.101 4 H 0.092 0.908 5 C -0.159 4.159 6 C 0.261 3.739 7 F -0.205 7.205 8 F -0.208 7.208 9 C 0.551 3.449 10 O -0.514 6.514 11 N -0.632 5.632 12 C 0.094 3.906 13 C -0.113 4.113 14 H 0.091 0.909 15 C -0.114 4.114 16 C 0.148 3.852 17 N -0.584 5.584 18 C -0.253 4.253 19 H 0.061 0.939 20 C 0.012 3.988 21 N -0.905 5.905 22 Si 0.901 3.099 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.167 3.833 27 C 0.118 3.882 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.019 0.981 42 H 0.055 0.945 43 H 0.252 0.748 44 H 0.103 0.897 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.008 1.660 -14.796 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.123 4.123 4 H 0.110 0.890 5 C -0.197 4.197 6 C 0.208 3.792 7 F -0.187 7.187 8 F -0.189 7.189 9 C 0.339 3.661 10 O -0.388 6.388 11 N -0.368 5.368 12 C -0.030 4.030 13 C -0.132 4.132 14 H 0.109 0.891 15 C -0.154 4.154 16 C 0.021 3.979 17 N -0.306 5.306 18 C -0.382 4.382 19 H 0.078 0.922 20 C -0.186 4.186 21 N -0.549 5.549 22 Si 0.731 3.269 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.041 3.959 27 C 0.014 3.986 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.121 0.879 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 8.132 1.019 -14.050 16.266 hybrid contribution -0.012 -0.686 0.098 0.693 sum 8.120 0.333 -13.952 16.146 Atomic orbital electron populations 1.21789 0.94439 1.01692 1.03372 1.21527 0.97583 0.93481 1.02297 1.21273 0.94321 0.98683 0.97978 0.88980 1.22548 0.96584 1.04557 0.96008 1.22023 0.75772 0.94765 0.86652 1.92981 1.88673 1.74105 1.62923 1.92981 1.32039 1.96984 1.96884 1.19502 0.76978 0.79823 0.89834 1.90773 1.51517 1.62848 1.33652 1.49514 1.65124 1.06438 1.15725 1.23324 0.98262 0.87101 0.94283 1.22750 0.94880 0.98911 0.96688 0.89112 1.21826 0.94493 0.99782 0.99270 1.20729 0.94023 0.93654 0.89463 1.43426 1.12645 1.23314 1.51264 1.19020 1.20567 1.00854 0.97783 0.92170 1.24987 0.99712 0.98533 0.95393 1.69968 1.41625 1.36368 1.06931 0.86397 0.78162 0.84945 0.77378 1.20992 1.21692 1.21147 1.20197 0.83966 1.01524 0.90188 1.22664 0.95776 0.87000 0.93186 0.91192 0.93162 0.92683 0.90608 0.92011 0.90132 0.89240 0.87806 0.86795 0.90556 0.91102 0.92725 0.92104 0.96338 0.92652 0.93739 0.87892 0.95316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.64 37.16 0.36 -2.01 16 2 C -0.11 -1.47 5.03 -26.73 -0.13 -1.61 16 3 C -0.10 -1.37 2.07 -91.77 -0.19 -1.56 16 4 H 0.09 1.16 7.31 -51.93 -0.38 0.78 16 5 C -0.16 -1.78 4.89 -26.74 -0.13 -1.91 16 6 C 0.26 2.59 5.16 37.16 0.19 2.78 16 7 F -0.21 -2.31 16.93 2.25 0.04 -2.27 16 8 F -0.21 -2.34 17.34 2.25 0.04 -2.30 16 9 C 0.55 10.16 6.12 -10.99 -0.07 10.09 16 10 O -0.51 -12.05 15.31 5.56 0.09 -11.97 16 11 N -0.63 -10.98 3.33 -187.68 -0.63 -11.61 16 12 C 0.09 1.22 7.62 -11.54 -0.09 1.13 16 13 C -0.11 -1.68 4.57 -90.31 -0.41 -2.09 16 14 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.11 -1.84 5.69 -26.62 -0.15 -1.99 16 16 C 0.15 3.00 6.46 -3.94 -0.03 2.97 16 17 N -0.58 -14.57 3.02 -174.89 -0.53 -15.10 16 18 C -0.25 -7.05 9.51 -15.06 -0.14 -7.20 16 19 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 20 C 0.01 0.36 5.02 -17.43 -0.09 0.27 16 21 N -0.90 -27.17 10.86 55.49 0.60 -26.57 16 22 Si 0.90 22.91 29.57 -169.99 -5.03 17.89 16 23 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 26 C 0.17 4.09 4.60 -5.43 -0.02 4.07 16 27 C 0.12 2.20 4.03 -77.68 -0.31 1.89 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.52 7.38 -51.93 -0.38 1.13 16 32 H 0.06 0.60 6.25 -51.93 -0.32 0.28 16 33 H 0.08 1.19 7.68 -51.93 -0.40 0.79 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.11 0.86 6.25 -51.93 -0.32 0.54 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.82 7.76 -51.93 -0.40 0.42 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.07 7.68 -51.93 -0.40 0.67 16 41 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 42 H 0.05 1.11 7.89 -51.93 -0.41 0.70 16 43 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.10 2.97 5.06 -51.93 -0.26 2.71 16 45 H 0.03 0.77 7.97 -51.93 -0.41 0.35 16 LS Contribution 358.75 15.07 5.41 5.41 Total: -1.00 -33.12 358.75 -8.28 -41.40 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.05 Total: 0.29 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.22 Total: 4.84 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.55 Total: -53.27 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.08 Total: -4.58 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.03 Total: 17.89 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.12 -8.28 -41.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221611283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.986 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds