Wall clock time and date at job start Tue Mar 31 2020 11:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47107 * 2 1 4 4 H 1.09000 * 109.47108 * 303.96108 * 3 2 1 5 5 C 1.52995 * 109.46927 * 63.96461 * 3 2 1 6 6 C 1.53005 * 109.47011 * 187.39569 * 5 3 2 7 7 F 1.39900 * 109.47102 * 63.57504 * 6 5 3 8 8 F 1.39908 * 109.46929 * 183.57284 * 6 5 3 9 9 C 1.50706 * 109.47110 * 183.95881 * 3 2 1 10 10 O 1.21275 * 120.00179 * 240.00112 * 9 3 2 11 11 N 1.34779 * 119.99709 * 60.00229 * 9 3 2 12 12 C 1.47809 * 135.01360 * 359.97438 * 11 9 3 13 13 C 1.54643 * 85.79463 * 153.80731 * 12 11 9 14 14 H 1.08999 * 114.44448 * 139.83967 * 13 12 11 15 15 C 1.53016 * 110.83965 * 270.23154 * 13 12 11 16 16 C 1.52622 * 109.52245 * 143.77114 * 15 13 12 17 17 N 1.46617 * 108.26290 * 301.23269 * 16 15 13 18 18 C 1.36935 * 119.89450 * 237.29278 * 17 16 15 19 19 H 1.07995 * 120.00670 * 150.92526 * 18 17 16 20 20 C 1.38814 * 119.99646 * 330.92640 * 18 17 16 21 21 N 1.31622 * 119.99976 * 157.49261 * 20 18 17 22 22 Si 1.86802 * 120.00011 * 337.48950 * 20 18 17 23 23 H 1.48501 * 109.47224 * 95.08962 * 22 20 18 24 24 H 1.48499 * 109.46980 * 335.09124 * 22 20 18 25 25 H 1.48501 * 109.47313 * 215.08868 * 22 20 18 26 26 C 1.45686 * 120.21619 * 57.02264 * 17 16 15 27 27 C 1.46820 * 135.01267 * 179.97438 * 11 9 3 28 28 H 1.09002 * 110.90559 * 94.54408 * 27 11 9 29 29 H 1.08992 * 109.47196 * 300.46513 * 1 2 3 30 30 H 1.09001 * 109.47131 * 60.46894 * 1 2 3 31 31 H 1.09002 * 109.47176 * 180.46079 * 1 2 3 32 32 H 1.08999 * 109.47583 * 239.99795 * 2 1 3 33 33 H 1.09004 * 109.46904 * 120.00537 * 2 1 3 34 34 H 1.08999 * 109.47301 * 307.39673 * 5 3 2 35 35 H 1.09004 * 109.47720 * 67.39257 * 5 3 2 36 36 H 1.08993 * 109.47101 * 303.57303 * 6 5 3 37 37 H 1.09003 * 113.82215 * 39.58609 * 12 11 9 38 38 H 1.09003 * 113.93611 * 268.04265 * 12 11 9 39 39 H 1.09004 * 109.47243 * 263.87927 * 15 13 12 40 40 H 1.08998 * 109.47581 * 23.89625 * 15 13 12 41 41 H 1.08997 * 109.65417 * 181.51262 * 16 15 13 42 42 H 1.09001 * 109.59670 * 60.92087 * 16 15 13 43 43 H 0.96998 * 119.99677 * 179.97438 * 21 20 18 44 44 H 1.09000 * 108.71744 * 82.02171 * 26 17 16 45 45 H 1.09000 * 108.71168 * 200.03547 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6198 1.9764 -0.8524 5 6 1.6130 2.1343 1.2961 6 6 1.9603 3.6224 1.2182 7 9 1.2259 4.2193 0.1879 8 9 1.6447 4.2391 2.4337 9 6 3.5438 1.4436 -0.0981 10 8 4.2086 1.9481 0.7819 11 7 4.1500 0.8840 -1.1639 12 6 3.6875 0.1981 -2.3888 13 6 5.0147 0.6775 -3.0215 14 1 5.4984 -0.0568 -3.6657 15 6 4.8427 2.0521 -3.6712 16 6 6.1152 2.8717 -3.4751 17 7 6.3640 2.9967 -2.0356 18 6 6.4640 4.2377 -1.4655 19 1 6.1812 4.3822 -0.4333 20 6 6.9288 5.3101 -2.2144 21 7 6.6260 6.5409 -1.8598 22 14 7.9840 5.0063 -3.7256 23 1 7.1236 4.9937 -4.9359 24 1 8.6721 3.6970 -3.5938 25 1 8.9953 6.0868 -3.8486 26 6 6.4993 1.8049 -1.2088 27 6 5.5435 0.7029 -1.5894 28 1 5.9201 -0.2729 -1.2828 29 1 -0.3633 0.5210 0.8857 30 1 -0.3633 0.5065 -0.8942 31 1 -0.3634 -1.0276 0.0083 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 0.5378 2.0188 1.4325 35 1 2.1366 1.6826 2.1387 36 1 3.0256 3.7369 1.0186 37 1 2.7998 0.6458 -2.8356 38 1 3.6136 -0.8848 -2.2882 39 1 4.6492 1.9288 -4.7368 40 1 4.0040 2.5710 -3.2071 41 1 5.9852 3.8610 -3.9137 42 1 6.9540 2.3640 -3.9512 43 1 6.9511 7.2902 -2.3829 44 1 7.5189 1.4303 -1.2993 45 1 6.3212 2.0787 -0.1688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221611284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:17 Heat of formation + Delta-G solvation = -85.953018 kcal Electronic energy + Delta-G solvation = -28968.500620 eV Core-core repulsion = 24851.342830 eV Total energy + Delta-G solvation = -4117.157790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.61367 -46.61741 -40.84924 -38.57610 -35.67128 -35.55450 -31.97954 -31.21577 -30.91500 -29.58579 -27.39074 -26.44982 -23.79794 -23.54925 -22.83904 -21.73991 -21.18503 -19.76970 -17.99588 -17.44073 -16.89615 -16.84679 -16.51559 -16.30625 -15.86748 -15.38319 -15.11155 -14.35889 -14.04491 -13.95243 -13.74732 -13.64490 -13.54791 -13.09735 -12.98598 -12.88897 -12.81633 -12.56081 -12.29750 -12.15739 -12.06708 -11.93678 -11.67510 -11.44468 -11.25932 -11.18293 -10.94974 -10.88441 -10.69564 -10.49161 -10.28081 -9.99428 -9.71801 -9.44726 -9.15506 -8.64519 -8.35273 -6.90857 -5.89426 -3.24743 2.86805 2.95705 3.33647 3.50832 3.54125 3.96117 4.31458 4.39137 4.47197 4.57240 4.63305 4.86743 4.89360 4.93918 4.94825 5.00037 5.12658 5.19577 5.34331 5.36516 5.39168 5.39486 5.51192 5.54470 5.62651 5.67837 5.74876 5.78820 5.80041 5.88165 5.95310 5.97940 6.03941 6.17581 6.27621 6.33119 6.58706 6.65496 6.78671 6.92261 7.97439 8.07349 8.40822 8.42963 9.03931 9.79018 10.12903 11.26454 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.005546 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.636738 B = 5047.704343 C = 6344.448665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.105 4.105 4 H 0.104 0.896 5 C -0.148 4.148 6 C 0.253 3.747 7 F -0.210 7.210 8 F -0.211 7.211 9 C 0.541 3.459 10 O -0.531 6.531 11 N -0.627 5.627 12 C 0.096 3.904 13 C -0.109 4.109 14 H 0.090 0.910 15 C -0.118 4.118 16 C 0.129 3.871 17 N -0.595 5.595 18 C -0.256 4.256 19 H 0.084 0.916 20 C 0.025 3.975 21 N -0.905 5.905 22 Si 0.878 3.122 23 H -0.290 1.290 24 H -0.271 1.271 25 H -0.303 1.303 26 C 0.143 3.857 27 C 0.131 3.869 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.026 0.974 43 H 0.261 0.739 44 H 0.024 0.976 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.369 -17.085 -0.570 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.126 4.126 4 H 0.122 0.878 5 C -0.186 4.186 6 C 0.199 3.801 7 F -0.191 7.191 8 F -0.192 7.192 9 C 0.330 3.670 10 O -0.408 6.408 11 N -0.362 5.362 12 C -0.027 4.027 13 C -0.128 4.128 14 H 0.108 0.892 15 C -0.157 4.157 16 C 0.003 3.997 17 N -0.319 5.319 18 C -0.384 4.384 19 H 0.101 0.899 20 C -0.174 4.174 21 N -0.547 5.547 22 Si 0.708 3.292 23 H -0.218 1.218 24 H -0.196 1.196 25 H -0.232 1.232 26 C 0.017 3.983 27 C 0.027 3.973 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.147 0.853 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.042 0.958 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.107 -16.507 0.106 19.896 hybrid contribution 0.447 -0.018 -0.924 1.026 sum -10.660 -16.525 -0.818 19.682 Atomic orbital electron populations 1.21851 0.94939 1.01925 1.02425 1.21479 0.96553 0.93884 1.03038 1.21294 0.93044 0.98648 0.99613 0.87839 1.22505 1.03593 0.93200 0.99339 1.22271 0.97535 0.88820 0.71437 1.92950 1.80562 1.85876 1.59729 1.92938 1.94872 1.85056 1.46357 1.20001 0.89278 0.77743 0.79945 1.90697 1.66376 1.45274 1.38414 1.49767 1.09351 1.56608 1.20486 1.23592 0.98792 0.96924 0.83431 1.22890 0.95386 0.98738 0.95780 0.89166 1.21782 1.01319 0.93882 0.98718 1.21103 0.93551 0.98789 0.86265 1.43788 1.83216 1.02224 1.02629 1.18905 1.37739 0.83024 0.98749 0.89874 1.25276 0.99188 0.94960 0.97962 1.69879 1.45845 0.98023 1.41001 0.86977 0.81557 0.77293 0.83348 1.21778 1.19563 1.23164 1.20194 0.94140 0.86700 0.97298 1.22401 0.83921 0.99339 0.91646 0.90259 0.92212 0.92291 0.92347 0.90953 0.91311 0.88990 0.88076 0.85285 0.90172 0.90064 0.92235 0.91379 0.90745 0.95639 0.92864 0.95812 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.11 -1.00 5.33 -26.73 -0.14 -1.14 16 3 C -0.10 -1.28 2.01 -91.77 -0.18 -1.47 16 4 H 0.10 1.29 7.71 -51.93 -0.40 0.89 16 5 C -0.15 -1.87 4.45 -26.73 -0.12 -1.99 16 6 C 0.25 4.13 5.10 37.16 0.19 4.32 16 7 F -0.21 -3.65 16.84 2.25 0.04 -3.61 16 8 F -0.21 -3.59 17.34 2.25 0.04 -3.55 16 9 C 0.54 8.70 7.01 -10.98 -0.08 8.63 16 10 O -0.53 -10.61 13.25 5.56 0.07 -10.54 16 11 N -0.63 -9.17 3.30 -174.00 -0.57 -9.74 16 12 C 0.10 1.01 6.21 -3.01 -0.02 0.99 16 13 C -0.11 -1.41 4.39 -89.97 -0.40 -1.81 16 14 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 15 C -0.12 -1.91 5.64 -26.92 -0.15 -2.06 16 16 C 0.13 2.71 4.16 -4.17 -0.02 2.69 16 17 N -0.60 -14.14 2.75 -175.37 -0.48 -14.62 16 18 C -0.26 -7.33 9.93 -15.06 -0.15 -7.48 16 19 H 0.08 2.65 8.01 -52.49 -0.42 2.23 16 20 C 0.02 0.73 5.16 -17.43 -0.09 0.64 16 21 N -0.90 -28.34 13.97 55.49 0.78 -27.56 16 22 Si 0.88 22.38 24.46 -169.99 -4.16 18.22 16 23 H -0.29 -7.08 6.71 56.52 0.38 -6.70 16 24 H -0.27 -6.73 6.81 56.52 0.38 -6.35 16 25 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 26 C 0.14 2.91 6.17 -5.60 -0.03 2.87 16 27 C 0.13 2.00 4.23 -69.59 -0.29 1.71 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.44 6.36 -51.93 -0.33 0.11 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.59 6.10 -51.93 -0.32 0.27 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.95 6.20 -51.93 -0.32 0.63 16 35 H 0.10 1.27 7.87 -51.93 -0.41 0.86 16 36 H 0.13 2.47 6.12 -51.93 -0.32 2.15 16 37 H 0.08 0.78 7.97 -51.93 -0.41 0.36 16 38 H 0.08 0.63 8.01 -51.93 -0.42 0.22 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.23 7.69 -51.93 -0.40 0.83 16 41 H 0.07 1.76 4.52 -51.93 -0.23 1.52 16 42 H 0.03 0.52 7.37 -51.93 -0.38 0.14 16 43 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 1.84 6.33 -51.93 -0.33 1.51 16 LS Contribution 347.57 15.07 5.24 5.24 Total: -1.00 -33.75 347.57 -7.00 -40.75 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.83 Total: 0.30 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -1.13 Total: 5.12 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.28 Total: -51.93 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.07 Total: -10.54 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.08 Total: -7.16 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.16 Total: 18.22 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.75 -7.00 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221611284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.201 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds