Wall clock time and date at job start Tue Mar 31 2020 11:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31177 * 118.52285 * 2 1 4 4 C 1.34056 * 120.41352 * 179.97438 * 3 2 1 5 5 C 1.40180 * 122.01400 * 180.02562 * 4 3 2 6 6 C 1.36288 * 119.58371 * 179.70488 * 5 4 3 7 7 C 1.39245 * 121.04778 * 0.30259 * 6 5 4 8 8 C 1.36347 * 120.91136 * 359.97438 * 7 6 5 9 9 C 1.40013 * 119.49141 * 359.97438 * 8 7 6 10 10 C 1.41393 * 122.11490 * 179.97438 * 9 8 7 11 11 O 1.35274 * 120.89759 * 359.97438 * 10 9 8 12 12 C 1.42896 * 117.00447 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.46737 * 30.00464 * 12 11 10 14 14 C 1.50697 * 109.47516 * 270.00571 * 12 11 10 15 15 H 1.08000 * 120.00286 * 119.99332 * 14 12 11 16 16 C 1.37880 * 119.99676 * 299.99950 * 14 12 11 17 17 N 1.31509 * 120.00059 * 359.97438 * 16 14 12 18 18 Si 1.86807 * 119.99812 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46893 * 90.00079 * 18 16 14 20 20 H 1.48502 * 109.46786 * 209.99702 * 18 16 14 21 21 H 1.48496 * 109.46916 * 329.99826 * 18 16 14 22 22 C 1.53000 * 109.47299 * 150.00248 * 12 11 10 23 23 N 1.46909 * 109.47012 * 293.28532 * 22 12 11 24 24 C 1.46900 * 109.46872 * 64.52593 * 23 22 12 25 25 C 1.46898 * 109.46738 * 184.52267 * 23 22 12 26 26 C 1.46892 * 109.47253 * 304.52399 * 23 22 12 27 27 N 1.32381 * 118.52928 * 179.97438 * 2 1 3 28 28 H 1.08991 * 109.46935 * 90.00197 * 1 2 3 29 29 H 1.09003 * 109.46931 * 209.99863 * 1 2 3 30 30 H 1.08997 * 109.47215 * 329.99642 * 1 2 3 31 31 H 1.08000 * 120.20651 * 359.97438 * 5 4 3 32 32 H 1.08003 * 119.47533 * 180.28255 * 6 5 4 33 33 H 1.07997 * 119.54640 * 179.97438 * 7 6 5 34 34 H 1.08001 * 120.24829 * 179.97438 * 8 7 6 35 35 H 0.97001 * 120.00053 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.46714 * 53.28102 * 22 12 11 37 37 H 1.08991 * 109.47173 * 173.28766 * 22 12 11 38 38 H 1.08994 * 109.47433 * 50.66788 * 24 23 22 39 39 H 1.08994 * 109.46870 * 170.67027 * 24 23 22 40 40 H 1.09009 * 109.47000 * 290.66679 * 24 23 22 41 41 H 1.08991 * 109.47031 * 60.00305 * 25 23 22 42 42 H 1.09005 * 109.46807 * 180.02562 * 25 23 22 43 43 H 1.09000 * 109.47595 * 299.99715 * 25 23 22 44 44 H 1.09001 * 109.47396 * 59.99848 * 26 23 22 45 45 H 1.08994 * 109.47343 * 179.97438 * 26 23 22 46 46 H 1.09000 * 109.47443 * 300.00154 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1334 1.1526 0.0000 4 6 3.4732 1.1968 0.0005 5 6 4.1768 2.4093 0.0011 6 6 5.5396 2.3964 0.0077 7 6 6.2465 1.1968 0.0076 8 6 5.5942 -0.0006 0.0015 9 6 4.1943 -0.0228 -0.0044 10 6 3.4618 -1.2322 -0.0114 11 8 4.0947 -2.4277 -0.0134 12 6 3.2732 -3.5969 -0.0201 13 1 2.3379 -3.3806 -0.5364 14 6 2.9795 -4.0127 1.3983 15 1 1.9586 -4.0561 1.7480 16 6 4.0142 -4.3376 2.2497 17 7 5.2573 -4.2851 1.8238 18 14 3.6502 -4.8523 4.0082 19 1 3.4703 -6.3252 4.0656 20 1 4.7827 -4.4575 4.8839 21 1 2.4085 -4.1834 4.4728 22 6 4.0044 -4.7300 -0.7427 23 7 4.1481 -4.3914 -2.1650 24 6 5.0099 -3.2097 -2.3023 25 6 4.7526 -5.5239 -2.8792 26 6 2.8258 -4.1021 -2.7355 27 7 2.1393 -1.1631 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 3.6422 3.3477 0.0007 32 1 6.0798 3.3316 0.0127 33 1 7.3263 1.2149 0.0125 34 1 6.1532 -0.9246 0.0011 35 1 5.9852 -4.5140 2.4227 36 1 4.9912 -4.8659 -0.3001 37 1 3.4321 -5.6523 -0.6448 38 1 5.9290 -3.3625 -1.7366 39 1 5.2517 -3.0567 -3.3540 40 1 4.4883 -2.3330 -1.9181 41 1 4.1132 -6.4007 -2.7772 42 1 4.8596 -5.2725 -3.9344 43 1 5.7338 -5.7385 -2.4559 44 1 2.3773 -3.2619 -2.2055 45 1 2.9325 -3.8505 -3.7906 46 1 2.1864 -4.9790 -2.6335 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226552862.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:26 Heat of formation + Delta-G solvation = 136.988597 kcal Electronic energy + Delta-G solvation = -28264.564286 eV Core-core repulsion = 24659.533327 eV Total energy + Delta-G solvation = -3605.030958 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.177 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.46926 -42.07921 -39.37257 -38.42326 -35.12159 -33.79452 -32.88548 -31.65272 -31.53012 -30.44416 -30.33783 -28.92046 -27.87031 -25.60717 -24.87849 -23.73709 -23.14632 -22.56025 -19.61036 -19.25163 -19.03787 -18.59138 -18.53831 -18.00664 -17.40094 -16.60322 -16.24669 -15.96258 -15.73497 -15.21691 -15.10955 -15.06194 -14.82494 -14.60116 -14.28217 -14.17497 -14.08694 -13.99008 -13.87886 -13.85892 -13.58759 -13.30709 -13.19318 -13.05576 -12.69997 -12.46346 -12.38968 -12.21453 -11.98535 -11.57675 -11.31938 -11.11495 -10.49281 -10.25371 -10.00077 -9.93541 -8.85192 -7.86445 -6.04408 -0.37784 -0.05017 0.22505 1.16282 1.95622 2.09051 2.19917 2.22361 2.23132 2.24711 2.30080 2.37284 2.96281 3.08456 3.13354 3.18029 3.32728 3.34471 3.37189 3.43448 3.54625 3.57639 3.67378 3.69469 3.75219 3.85688 3.86739 4.04991 4.05465 4.06758 4.32937 4.39263 4.40417 4.51285 4.67625 4.77492 4.85738 4.96735 5.06259 5.12936 5.21856 5.34595 5.53578 5.60325 5.91147 6.09543 6.18635 6.30367 6.57752 7.15807 7.49693 7.79140 9.16844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.363 3.637 3 N -0.545 5.545 4 C 0.187 3.813 5 C -0.118 4.118 6 C -0.071 4.071 7 C -0.145 4.145 8 C -0.049 4.049 9 C -0.184 4.184 10 C 0.421 3.579 11 O -0.283 6.283 12 C 0.191 3.809 13 H 0.071 0.929 14 C -0.546 4.546 15 H 0.082 0.918 16 C 0.087 3.913 17 N -0.866 5.866 18 Si 0.905 3.095 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.266 1.266 22 C -0.004 4.004 23 N -0.274 5.274 24 C -0.041 4.041 25 C -0.040 4.040 26 C -0.049 4.049 27 N -0.584 5.584 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.280 0.720 36 H 0.159 0.841 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.590 -3.285 -16.274 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.095 3.905 3 N -0.266 5.266 4 C 0.062 3.938 5 C -0.137 4.137 6 C -0.092 4.092 7 C -0.163 4.163 8 C -0.070 4.070 9 C -0.190 4.190 10 C 0.224 3.776 11 O -0.185 6.185 12 C 0.137 3.863 13 H 0.089 0.911 14 C -0.582 4.582 15 H 0.100 0.900 16 C -0.122 4.122 17 N -0.500 5.500 18 Si 0.730 3.270 19 H -0.195 1.195 20 H -0.202 1.202 21 H -0.191 1.191 22 C -0.122 4.122 23 N 0.068 4.932 24 C -0.182 4.182 25 C -0.182 4.182 26 C -0.191 4.191 27 N -0.319 5.319 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.155 0.845 35 H 0.090 0.910 36 H 0.177 0.823 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.121 0.879 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.128 0.872 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.123 -3.361 -16.212 16.595 hybrid contribution 0.804 -0.353 1.238 1.518 sum 1.928 -3.714 -14.974 15.547 Atomic orbital electron populations 1.20595 0.85941 1.04394 1.03557 1.22857 0.97677 0.82420 0.87547 1.68654 1.08001 1.28977 1.20920 1.18802 0.89296 0.92281 0.93455 1.20678 0.93832 0.96564 1.02609 1.21063 0.93936 0.98715 0.95443 1.20941 1.00568 0.92158 1.02656 1.20933 0.92103 0.99054 0.94879 1.18789 0.95831 0.92433 1.11918 1.20301 0.87566 0.86468 0.83303 1.86459 1.37786 1.11559 1.82666 1.20454 0.88397 0.78983 0.98428 0.91095 1.21199 0.94905 1.48304 0.93838 0.90038 1.25108 0.94658 0.92149 1.00326 1.69590 0.99042 1.43639 1.37757 0.86299 0.79339 0.79457 0.81874 1.19527 1.20226 1.19053 1.24961 1.11416 1.02970 0.72892 1.46420 1.14322 1.14784 1.17711 1.24258 0.98712 0.89008 1.06231 1.24010 1.03727 0.90153 1.00291 1.24105 0.83932 1.08232 1.02797 1.67931 1.08613 1.30599 1.24740 0.89821 0.89478 0.89597 0.84368 0.85047 0.85317 0.84460 0.91031 0.82339 0.85530 0.85885 0.87888 0.86182 0.86681 0.87172 0.86438 0.86168 0.87177 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.10 10.28 36.01 0.37 0.27 16 2 C 0.36 1.64 7.62 -157.21 -1.20 0.44 16 3 N -0.54 -3.08 10.32 -8.80 -0.09 -3.17 16 4 C 0.19 0.93 6.61 -84.85 -0.56 0.37 16 5 C -0.12 -0.34 10.01 -39.55 -0.40 -0.73 16 6 C -0.07 -0.07 9.95 -39.91 -0.40 -0.46 16 7 C -0.14 -0.12 9.96 -39.89 -0.40 -0.52 16 8 C -0.05 -0.10 9.61 -39.60 -0.38 -0.48 16 9 C -0.18 -0.76 5.75 -106.72 -0.61 -1.37 16 10 C 0.42 1.69 6.71 -16.09 -0.11 1.59 16 11 O -0.28 -0.67 5.72 -17.52 -0.10 -0.77 16 12 C 0.19 0.25 1.63 -27.88 -0.05 0.21 16 13 H 0.07 0.01 4.75 -51.93 -0.25 -0.23 16 14 C -0.55 -3.91 8.90 -34.44 -0.31 -4.22 16 15 H 0.08 0.73 7.81 -52.49 -0.41 0.32 16 16 C 0.09 0.76 5.24 -17.82 -0.09 0.66 16 17 N -0.87 -6.94 10.95 55.43 0.61 -6.33 16 18 Si 0.90 8.25 29.54 -169.99 -5.02 3.23 16 19 H -0.27 -2.46 7.11 56.52 0.40 -2.06 16 20 H -0.28 -2.88 7.11 56.52 0.40 -2.48 16 21 H -0.27 -2.77 7.11 56.52 0.40 -2.37 16 22 C 0.00 0.02 3.53 -3.82 -0.01 0.00 16 23 N -0.27 2.65 0.05 -395.63 -0.02 2.63 16 24 C -0.04 0.35 7.17 60.06 0.43 0.79 16 25 C -0.04 0.51 8.00 60.06 0.48 0.99 16 26 C -0.05 0.51 7.54 60.06 0.45 0.97 16 27 N -0.58 -2.60 8.69 -10.41 -0.09 -2.69 16 28 H 0.08 -0.06 8.14 -51.93 -0.42 -0.49 16 29 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.14 0.23 8.06 -52.49 -0.42 -0.19 16 32 H 0.13 -0.21 8.06 -52.48 -0.42 -0.64 16 33 H 0.13 -0.18 8.06 -52.49 -0.42 -0.60 16 34 H 0.14 0.14 7.72 -52.49 -0.41 -0.27 16 35 H 0.28 2.44 8.31 -40.82 -0.34 2.10 16 36 H 0.16 -0.23 6.12 -51.93 -0.32 -0.55 16 37 H 0.13 -0.63 8.09 -51.93 -0.42 -1.05 16 38 H 0.12 -0.96 7.94 -51.93 -0.41 -1.37 16 39 H 0.10 -1.20 8.00 -51.93 -0.42 -1.62 16 40 H 0.12 -0.68 4.95 -51.92 -0.26 -0.93 16 41 H 0.11 -1.53 8.12 -51.93 -0.42 -1.95 16 42 H 0.11 -1.59 8.07 -51.93 -0.42 -2.01 16 43 H 0.12 -1.44 8.14 -51.93 -0.42 -1.86 16 44 H 0.12 -0.91 5.86 -51.93 -0.30 -1.22 16 45 H 0.11 -1.41 8.14 -51.93 -0.42 -1.83 16 46 H 0.12 -1.38 8.14 -51.93 -0.42 -1.80 16 LS Contribution 363.85 15.07 5.48 5.48 Total: 0.00 -17.93 363.85 -8.98 -26.90 By element: Atomic # 1 Polarization: -16.80 SS G_CDS: -6.97 Total: -23.77 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.78 Total: -1.51 kcal Atomic # 7 Polarization: -9.97 SS G_CDS: 0.41 Total: -9.57 kcal Atomic # 8 Polarization: -0.67 SS G_CDS: -0.10 Total: -0.77 kcal Atomic # 14 Polarization: 8.25 SS G_CDS: -5.02 Total: 3.23 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -17.93 -8.98 -26.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226552862.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.893 kcal (2) G-P(sol) polarization free energy of solvation -17.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds