Wall clock time and date at job start Tue Mar 31 2020 11:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31177 * 118.52285 * 2 1 4 4 C 1.34056 * 120.41352 * 179.97438 * 3 2 1 5 5 C 1.40180 * 122.01400 * 180.02562 * 4 3 2 6 6 C 1.36288 * 119.58371 * 179.70488 * 5 4 3 7 7 C 1.39245 * 121.04778 * 0.30259 * 6 5 4 8 8 C 1.36347 * 120.91136 * 359.97438 * 7 6 5 9 9 C 1.40013 * 119.49141 * 359.97438 * 8 7 6 10 10 C 1.41393 * 122.11490 * 179.97438 * 9 8 7 11 11 O 1.35274 * 120.89759 * 359.97438 * 10 9 8 12 12 C 1.42896 * 117.00447 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.46737 * 30.00464 * 12 11 10 14 14 C 1.50697 * 109.47516 * 270.00571 * 12 11 10 15 15 H 1.08000 * 120.00286 * 119.99332 * 14 12 11 16 16 C 1.37880 * 119.99676 * 299.99950 * 14 12 11 17 17 N 1.31509 * 120.00059 * 359.97438 * 16 14 12 18 18 Si 1.86807 * 119.99812 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46893 * 90.00079 * 18 16 14 20 20 H 1.48502 * 109.46786 * 209.99702 * 18 16 14 21 21 H 1.48496 * 109.46916 * 329.99826 * 18 16 14 22 22 C 1.53000 * 109.47299 * 150.00248 * 12 11 10 23 23 N 1.46909 * 109.47012 * 293.28532 * 22 12 11 24 24 C 1.46900 * 109.46872 * 64.52593 * 23 22 12 25 25 C 1.46898 * 109.46738 * 184.52267 * 23 22 12 26 26 C 1.46892 * 109.47253 * 304.52399 * 23 22 12 27 27 N 1.32381 * 118.52928 * 179.97438 * 2 1 3 28 28 H 1.08991 * 109.46935 * 90.00197 * 1 2 3 29 29 H 1.09003 * 109.46931 * 209.99863 * 1 2 3 30 30 H 1.08997 * 109.47215 * 329.99642 * 1 2 3 31 31 H 1.08000 * 120.20651 * 359.97438 * 5 4 3 32 32 H 1.08003 * 119.47533 * 180.28255 * 6 5 4 33 33 H 1.07997 * 119.54640 * 179.97438 * 7 6 5 34 34 H 1.08001 * 120.24829 * 179.97438 * 8 7 6 35 35 H 0.97001 * 120.00053 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.46714 * 53.28102 * 22 12 11 37 37 H 1.08991 * 109.47173 * 173.28766 * 22 12 11 38 38 H 1.08994 * 109.47433 * 50.66788 * 24 23 22 39 39 H 1.08994 * 109.46870 * 170.67027 * 24 23 22 40 40 H 1.09009 * 109.47000 * 290.66679 * 24 23 22 41 41 H 1.08991 * 109.47031 * 60.00305 * 25 23 22 42 42 H 1.09005 * 109.46807 * 180.02562 * 25 23 22 43 43 H 1.09000 * 109.47595 * 299.99715 * 25 23 22 44 44 H 1.09001 * 109.47396 * 59.99848 * 26 23 22 45 45 H 1.08994 * 109.47343 * 179.97438 * 26 23 22 46 46 H 1.09000 * 109.47443 * 300.00154 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1334 1.1526 0.0000 4 6 3.4732 1.1968 0.0005 5 6 4.1768 2.4093 0.0011 6 6 5.5396 2.3964 0.0077 7 6 6.2465 1.1968 0.0076 8 6 5.5942 -0.0006 0.0015 9 6 4.1943 -0.0228 -0.0044 10 6 3.4618 -1.2322 -0.0114 11 8 4.0947 -2.4277 -0.0134 12 6 3.2732 -3.5969 -0.0201 13 1 2.3379 -3.3806 -0.5364 14 6 2.9795 -4.0127 1.3983 15 1 1.9586 -4.0561 1.7480 16 6 4.0142 -4.3376 2.2497 17 7 5.2573 -4.2851 1.8238 18 14 3.6502 -4.8523 4.0082 19 1 3.4703 -6.3252 4.0656 20 1 4.7827 -4.4575 4.8839 21 1 2.4085 -4.1834 4.4728 22 6 4.0044 -4.7300 -0.7427 23 7 4.1481 -4.3914 -2.1650 24 6 5.0099 -3.2097 -2.3023 25 6 4.7526 -5.5239 -2.8792 26 6 2.8258 -4.1021 -2.7355 27 7 2.1393 -1.1631 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 3.6422 3.3477 0.0007 32 1 6.0798 3.3316 0.0127 33 1 7.3263 1.2149 0.0125 34 1 6.1532 -0.9246 0.0011 35 1 5.9852 -4.5140 2.4227 36 1 4.9912 -4.8659 -0.3001 37 1 3.4321 -5.6523 -0.6448 38 1 5.9290 -3.3625 -1.7366 39 1 5.2517 -3.0567 -3.3540 40 1 4.4883 -2.3330 -1.9181 41 1 4.1132 -6.4007 -2.7772 42 1 4.8596 -5.2725 -3.9344 43 1 5.7338 -5.7385 -2.4559 44 1 2.3773 -3.2619 -2.2055 45 1 2.9325 -3.8505 -3.7906 46 1 2.1864 -4.9790 -2.6335 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226552862.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:26 Heat of formation + Delta-G solvation = 132.439583 kcal Electronic energy + Delta-G solvation = -28264.761546 eV Core-core repulsion = 24659.533327 eV Total energy + Delta-G solvation = -3605.228218 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.96532 -42.18550 -39.48757 -38.59395 -35.50802 -34.08949 -33.07388 -31.80170 -31.53404 -29.62524 -29.53430 -29.06656 -27.92344 -25.78280 -24.61922 -23.92040 -23.19517 -22.56295 -19.86785 -19.43122 -18.72897 -18.58637 -17.87633 -17.73370 -17.30359 -16.79344 -16.61617 -16.31062 -15.78943 -15.33261 -15.08424 -14.94620 -14.54068 -14.34024 -14.23284 -13.99802 -13.72835 -13.42267 -13.37087 -13.32760 -13.26621 -13.24562 -13.14890 -13.01392 -12.99464 -12.81369 -12.70038 -12.55930 -12.44304 -11.84512 -11.82139 -11.32787 -10.91907 -10.76381 -10.23075 -10.17631 -9.06578 -8.49003 -6.62409 -0.58000 -0.26049 0.92846 0.94141 1.26231 1.39154 1.45017 1.89709 2.05633 2.22650 2.75894 2.96258 3.00147 3.03664 3.11038 3.11659 3.21089 3.67298 3.71689 3.90133 4.00920 4.04855 4.21277 4.23588 4.27456 4.31326 4.31754 4.40389 4.43133 4.45414 4.54350 4.63427 4.71594 4.72247 4.74546 4.78924 4.79972 4.87578 4.98940 5.09050 5.16253 5.25450 5.38361 5.45919 5.53556 5.73606 5.79454 6.04621 6.26831 6.59426 7.18094 7.22891 8.50653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.346 3.654 3 N -0.567 5.567 4 C 0.160 3.840 5 C -0.135 4.135 6 C -0.061 4.061 7 C -0.139 4.139 8 C -0.056 4.056 9 C -0.200 4.200 10 C 0.414 3.586 11 O -0.274 6.274 12 C 0.189 3.811 13 H 0.081 0.919 14 C -0.554 4.554 15 H 0.053 0.947 16 C 0.073 3.927 17 N -0.862 5.862 18 Si 0.916 3.084 19 H -0.268 1.268 20 H -0.295 1.295 21 H -0.291 1.291 22 C 0.017 3.983 23 N -0.261 5.261 24 C -0.041 4.041 25 C -0.042 4.042 26 C -0.052 4.052 27 N -0.595 5.595 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.143 0.857 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.145 0.855 35 H 0.272 0.728 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.113 0.887 39 H 0.142 0.858 40 H 0.088 0.912 41 H 0.127 0.873 42 H 0.141 0.859 43 H 0.115 0.885 44 H 0.088 0.912 45 H 0.144 0.856 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.842 -3.594 -19.219 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.078 3.922 3 N -0.289 5.289 4 C 0.035 3.965 5 C -0.154 4.154 6 C -0.081 4.081 7 C -0.157 4.157 8 C -0.076 4.076 9 C -0.205 4.205 10 C 0.216 3.784 11 O -0.175 6.175 12 C 0.135 3.865 13 H 0.098 0.902 14 C -0.592 4.592 15 H 0.071 0.929 16 C -0.135 4.135 17 N -0.498 5.498 18 Si 0.745 3.255 19 H -0.193 1.193 20 H -0.222 1.222 21 H -0.217 1.217 22 C -0.104 4.104 23 N 0.082 4.918 24 C -0.183 4.183 25 C -0.182 4.182 26 C -0.193 4.193 27 N -0.330 5.330 28 H 0.123 0.877 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.161 0.839 32 H 0.180 0.820 33 H 0.175 0.825 34 H 0.163 0.837 35 H 0.082 0.918 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.131 0.869 39 H 0.160 0.840 40 H 0.107 0.893 41 H 0.145 0.855 42 H 0.159 0.841 43 H 0.133 0.867 44 H 0.106 0.894 45 H 0.162 0.838 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.384 -3.683 -19.169 19.664 hybrid contribution 0.401 -0.186 2.127 2.172 sum 2.785 -3.869 -17.042 17.696 Atomic orbital electron populations 1.20648 0.84134 1.04307 1.04888 1.23413 0.98944 0.82339 0.87497 1.68666 1.08704 1.29531 1.21972 1.19194 0.89442 0.93430 0.94423 1.20885 0.94853 0.96105 1.03599 1.21439 0.93245 1.00118 0.93327 1.21314 1.02011 0.91493 1.00878 1.21087 0.91298 1.00130 0.95082 1.18970 0.96853 0.92193 1.12522 1.20511 0.87675 0.87107 0.83097 1.86477 1.37189 1.11296 1.82560 1.20493 0.90384 0.79511 0.96118 0.90158 1.21321 0.93235 1.47501 0.97161 0.92862 1.25122 0.95374 0.93412 0.99573 1.69636 0.98336 1.44985 1.36812 0.86217 0.77158 0.79230 0.82923 1.19264 1.22154 1.21700 1.24191 1.09461 1.00581 0.76124 1.46040 1.15216 1.15733 1.14848 1.24237 0.97709 0.87944 1.08412 1.24247 1.03553 0.89101 1.01342 1.24242 0.83245 1.07743 1.04073 1.67968 1.08976 1.30669 1.25400 0.87715 0.89465 0.89603 0.83898 0.82004 0.82463 0.83732 0.91820 0.84352 0.84118 0.86873 0.83951 0.89341 0.85461 0.84064 0.86671 0.89357 0.83793 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.28 71.24 0.73 0.42 16 2 C 0.35 3.85 7.62 138.76 1.06 4.91 16 3 N -0.57 -7.60 10.32 -181.75 -1.88 -9.47 16 4 C 0.16 1.85 6.61 40.13 0.27 2.12 16 5 C -0.14 -0.86 10.01 22.29 0.22 -0.63 16 6 C -0.06 -0.05 9.95 22.06 0.22 0.17 16 7 C -0.14 -0.08 9.96 22.07 0.22 0.14 16 8 C -0.06 -0.25 9.61 22.26 0.21 -0.03 16 9 C -0.20 -1.95 5.75 -21.22 -0.12 -2.07 16 10 C 0.41 4.11 6.71 85.38 0.57 4.68 16 11 O -0.27 -1.71 5.72 -85.59 -0.49 -2.20 16 12 C 0.19 0.74 1.63 29.85 0.05 0.79 16 13 H 0.08 0.15 4.75 -2.39 -0.01 0.14 16 14 C -0.55 -9.21 8.90 25.60 0.23 -8.99 16 15 H 0.05 1.14 7.81 -2.91 -0.02 1.12 16 16 C 0.07 1.42 5.24 84.66 0.44 1.87 16 17 N -0.86 -15.15 10.95 21.45 0.23 -14.92 16 18 Si 0.92 19.21 29.54 68.60 2.03 21.24 16 19 H -0.27 -5.36 7.11 99.48 0.71 -4.66 16 20 H -0.30 -6.98 7.11 99.48 0.71 -6.27 16 21 H -0.29 -7.15 7.11 99.48 0.71 -6.44 16 22 C 0.02 -0.14 3.53 86.30 0.30 0.17 16 23 N -0.26 5.41 0.05 ******* -0.07 5.34 16 24 C -0.04 0.76 7.17 127.69 0.92 1.68 16 25 C -0.04 1.19 8.00 127.69 1.02 2.21 16 26 C -0.05 1.17 7.54 127.69 0.96 2.14 16 27 N -0.59 -6.59 8.69 -299.83 -2.61 -9.19 16 28 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.14 0.61 8.06 -2.91 -0.02 0.59 16 32 H 0.16 -0.91 8.06 -2.91 -0.02 -0.93 16 33 H 0.16 -0.84 8.06 -2.91 -0.02 -0.86 16 34 H 0.14 0.34 7.72 -2.91 -0.02 0.31 16 35 H 0.27 5.18 8.31 -92.71 -0.77 4.41 16 36 H 0.14 -0.37 6.12 -2.39 -0.01 -0.39 16 37 H 0.14 -1.50 8.09 -2.39 -0.02 -1.52 16 38 H 0.11 -1.80 7.94 -2.39 -0.02 -1.82 16 39 H 0.14 -3.73 8.00 -2.39 -0.02 -3.75 16 40 H 0.09 -0.96 4.95 -2.38 -0.01 -0.97 16 41 H 0.13 -3.77 8.12 -2.39 -0.02 -3.79 16 42 H 0.14 -4.70 8.07 -2.38 -0.02 -4.72 16 43 H 0.11 -3.05 8.14 -2.39 -0.02 -3.07 16 44 H 0.09 -1.32 5.86 -2.39 -0.01 -1.34 16 45 H 0.14 -4.16 8.14 -2.39 -0.02 -4.18 16 46 H 0.13 -3.40 8.14 -2.39 -0.02 -3.42 16 Total: 0.00 -46.24 363.85 5.50 -40.74 By element: Atomic # 1 Polarization: -42.07 SS G_CDS: 0.97 Total: -41.10 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 7.31 Total: 9.55 kcal Atomic # 7 Polarization: -23.93 SS G_CDS: -4.32 Total: -28.24 kcal Atomic # 8 Polarization: -1.71 SS G_CDS: -0.49 Total: -2.20 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: 2.03 Total: 21.24 kcal Total: -46.24 5.50 -40.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226552862.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.181 kcal (2) G-P(sol) polarization free energy of solvation -46.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds