Wall clock time and date at job start Tue Mar 31 2020 11:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.36381 * 120.25038 * 2 1 4 4 C 1.39202 * 120.90489 * 180.25962 * 3 2 1 5 5 C 1.36322 * 121.04323 * 359.43409 * 4 3 2 6 6 C 1.40139 * 119.58238 * 0.27873 * 5 4 3 7 7 N 1.34092 * 122.00306 * 180.02562 * 6 5 4 8 8 C 1.31153 * 120.41036 * 179.97438 * 7 6 5 9 9 N 1.32421 * 122.95088 * 0.02562 * 8 7 6 10 10 C 1.32395 * 121.52727 * 359.97438 * 9 8 7 11 11 O 1.35273 * 120.89609 * 179.97438 * 10 9 8 12 12 C 1.42905 * 116.99465 * 0.02562 * 11 10 9 13 13 H 1.08997 * 109.47541 * 30.00024 * 12 11 10 14 14 C 1.50705 * 109.47070 * 269.99503 * 12 11 10 15 15 H 1.07997 * 119.99671 * 120.00050 * 14 12 11 16 16 C 1.37872 * 120.00184 * 300.00736 * 14 12 11 17 17 N 1.31521 * 120.00060 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 119.99965 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47293 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47155 * 119.99768 * 18 16 14 21 21 H 1.48504 * 109.47052 * 239.99316 * 18 16 14 22 22 C 1.52998 * 109.47189 * 149.99983 * 12 11 10 23 23 N 1.46906 * 109.47250 * 292.27899 * 22 12 11 24 24 C 1.46905 * 109.46880 * 63.97810 * 23 22 12 25 25 C 1.46893 * 109.47334 * 183.97674 * 23 22 12 26 26 C 1.46898 * 109.47072 * 303.98259 * 23 22 12 27 27 C 1.39969 * 120.24969 * 179.70391 * 2 1 3 28 28 H 1.08994 * 109.46596 * 263.15056 * 1 2 3 29 29 H 1.09002 * 109.46847 * 23.15240 * 1 2 3 30 30 H 1.08996 * 109.47133 * 143.14804 * 1 2 3 31 31 H 1.07997 * 119.54853 * 359.97154 * 3 2 1 32 32 H 1.08000 * 119.47621 * 179.71167 * 4 3 2 33 33 H 1.07998 * 120.21316 * 180.29886 * 5 4 3 34 34 H 1.07999 * 118.52604 * 179.97438 * 8 7 6 35 35 H 0.96996 * 119.99716 * 180.02562 * 17 16 14 36 36 H 1.09005 * 109.47323 * 52.27750 * 22 12 11 37 37 H 1.09001 * 109.47661 * 172.27926 * 22 12 11 38 38 H 1.08997 * 109.47162 * 50.28526 * 24 23 22 39 39 H 1.08996 * 109.46823 * 170.28448 * 24 23 22 40 40 H 1.09000 * 109.47116 * 290.28458 * 24 23 22 41 41 H 1.09003 * 109.47108 * 60.00025 * 25 23 22 42 42 H 1.09006 * 109.47363 * 180.02562 * 25 23 22 43 43 H 1.08996 * 109.47579 * 300.00011 * 25 23 22 44 44 H 1.08997 * 109.47154 * 59.99084 * 26 23 22 45 45 H 1.08996 * 109.47557 * 179.97438 * 26 23 22 46 46 H 1.09003 * 109.46697 * 299.99562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1942 1.1781 0.0000 4 6 3.5861 1.1940 -0.0054 5 6 4.3024 0.0342 0.0007 6 6 3.6290 -1.1948 0.0066 7 7 4.2848 -2.3644 0.0133 8 6 3.6229 -3.4966 0.0192 9 7 2.3001 -3.5576 0.0186 10 6 1.5565 -2.4622 0.0123 11 8 0.2060 -2.5394 0.0113 12 6 -0.3689 -3.8477 0.0178 13 1 0.2990 -4.5356 0.5361 14 6 -0.5696 -4.3153 -1.4008 15 1 -0.0775 -5.2115 -1.7486 16 6 -1.3812 -3.5989 -2.2545 17 7 -1.9808 -2.5076 -1.8308 18 14 -1.6293 -4.1781 -4.0130 19 1 -0.8502 -5.4219 -4.2391 20 1 -3.0709 -4.4470 -4.2468 21 1 -1.1637 -3.1253 -4.9512 22 6 -1.7186 -3.8081 0.7373 23 7 -1.5048 -3.5325 2.1644 24 6 -0.9170 -2.1954 2.3222 25 6 -2.7909 -3.5886 2.8720 26 6 -0.5926 -4.5377 2.7259 27 6 2.2122 -1.2091 0.0062 28 1 -0.3632 -0.1226 1.0203 29 1 -0.3633 0.9449 -0.4041 30 1 -0.3633 -0.8223 -0.6163 31 1 1.6509 2.1115 -0.0005 32 1 4.1067 2.1402 -0.0100 33 1 5.3820 0.0622 0.0012 34 1 4.1818 -4.4208 0.0240 35 1 -2.5521 -2.0039 -2.4314 36 1 -2.3382 -3.0227 0.3045 37 1 -2.2192 -4.7697 0.6240 38 1 -1.5045 -1.4714 1.7577 39 1 -0.9176 -1.9206 3.3769 40 1 0.1070 -2.2024 1.9490 41 1 -3.2270 -4.5807 2.7549 42 1 -2.6323 -3.3837 3.9308 43 1 -3.4677 -2.8427 2.4553 44 1 0.3616 -4.4961 2.2008 45 1 -0.4336 -4.3330 3.7846 46 1 -1.0287 -5.5298 2.6088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229393609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:35 Heat of formation + Delta-G solvation = 139.290425 kcal Electronic energy + Delta-G solvation = -28751.303170 eV Core-core repulsion = 25146.372026 eV Total energy + Delta-G solvation = -3604.931144 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.50668 -42.12395 -39.40262 -38.48410 -35.24872 -34.12214 -32.89283 -31.93507 -31.15923 -30.44955 -30.38096 -27.93760 -27.77892 -25.49336 -25.23365 -24.86802 -22.73950 -22.01642 -19.85463 -19.16011 -18.94109 -18.67867 -18.55056 -17.93405 -17.48602 -16.64890 -16.45206 -15.99199 -15.97505 -15.18434 -15.05534 -14.96949 -14.77836 -14.51534 -14.45824 -14.27871 -14.13611 -14.08425 -13.93328 -13.83668 -13.55049 -13.25489 -13.19793 -12.96729 -12.70677 -12.50046 -12.27955 -12.08280 -11.89904 -11.57187 -11.25081 -11.02641 -10.50370 -10.25824 -9.97932 -9.95071 -8.78211 -7.88465 -6.05540 -0.37768 -0.04549 0.20809 1.13046 1.95304 2.07711 2.20772 2.22516 2.22936 2.23351 2.29247 2.35277 2.95597 3.07588 3.11850 3.28454 3.33260 3.37892 3.42655 3.44708 3.51858 3.55708 3.65449 3.68259 3.75072 3.80396 3.85468 3.98769 4.00422 4.04423 4.26432 4.36159 4.40583 4.56644 4.66347 4.76259 4.89718 4.94460 5.05681 5.14344 5.41548 5.49771 5.58519 5.70222 6.00268 6.08678 6.18655 6.28461 6.54777 7.15315 7.46895 7.78318 9.15072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.015 4.015 3 C -0.151 4.151 4 C -0.065 4.065 5 C -0.126 4.126 6 C 0.186 3.814 7 N -0.545 5.545 8 C 0.341 3.659 9 N -0.589 5.589 10 C 0.419 3.581 11 O -0.277 6.277 12 C 0.184 3.816 13 H 0.072 0.928 14 C -0.543 4.543 15 H 0.082 0.918 16 C 0.088 3.912 17 N -0.868 5.868 18 Si 0.904 3.096 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.275 1.275 22 C -0.004 4.004 23 N -0.274 5.274 24 C -0.045 4.045 25 C -0.040 4.040 26 C -0.049 4.049 27 C -0.179 4.179 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.193 0.807 35 H 0.279 0.721 36 H 0.159 0.841 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.121 0.879 45 H 0.109 0.891 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 -0.007 16.119 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.018 4.018 3 C -0.169 4.169 4 C -0.086 4.086 5 C -0.145 4.145 6 C 0.061 3.939 7 N -0.265 5.265 8 C 0.052 3.948 9 N -0.324 5.324 10 C 0.222 3.778 11 O -0.178 6.178 12 C 0.130 3.870 13 H 0.090 0.910 14 C -0.580 4.580 15 H 0.100 0.900 16 C -0.122 4.122 17 N -0.503 5.503 18 Si 0.730 3.270 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.122 4.122 23 N 0.068 4.932 24 C -0.186 4.186 25 C -0.182 4.182 26 C -0.191 4.191 27 C -0.185 4.185 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.210 0.790 35 H 0.089 0.911 36 H 0.176 0.824 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.122 0.878 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.128 0.872 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.408 -0.443 16.071 16.670 hybrid contribution -0.498 0.418 -1.215 1.378 sum -4.906 -0.025 14.856 15.645 Atomic orbital electron populations 1.21389 0.89565 1.05487 1.02737 1.19748 0.96834 0.91299 0.93883 1.20847 0.94211 0.97892 1.03934 1.21039 0.94140 0.98392 0.95052 1.20656 1.00644 0.89766 1.03390 1.18807 0.88363 0.93272 0.93472 1.68816 1.39803 0.97904 1.19952 1.24594 0.86136 0.96276 0.87841 1.68115 1.08678 1.31077 1.24528 1.20336 0.85816 0.88359 0.83293 1.86640 1.12771 1.35777 1.82620 1.20517 0.87403 0.80597 0.98460 0.91017 1.21236 1.30559 1.12498 0.93698 0.90028 1.25077 0.93201 0.93628 1.00245 1.69559 1.28489 1.14633 1.37587 0.86255 0.78811 0.79806 0.82108 1.18994 1.19960 1.20033 1.24960 1.05565 1.09067 0.72635 1.46437 1.14223 1.14764 1.17795 1.24449 1.05223 0.82626 1.06315 1.24014 0.85064 1.08716 1.00424 1.24116 0.97927 0.94116 1.02942 1.18753 0.94661 0.93017 1.12039 0.91860 0.91751 0.85633 0.85398 0.85062 0.84399 0.79047 0.91052 0.82355 0.85506 0.85698 0.87821 0.86183 0.86643 0.87175 0.86437 0.86061 0.87199 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.08 8.77 36.01 0.32 0.24 16 2 C -0.02 -0.03 5.88 -104.64 -0.62 -0.65 16 3 C -0.15 -0.19 9.59 -39.89 -0.38 -0.57 16 4 C -0.07 -0.08 9.95 -39.91 -0.40 -0.47 16 5 C -0.13 -0.37 10.01 -39.56 -0.40 -0.76 16 6 C 0.19 0.88 6.61 -84.85 -0.56 0.32 16 7 N -0.54 -2.76 10.45 -12.64 -0.13 -2.89 16 8 C 0.34 1.18 12.22 -92.16 -1.13 0.06 16 9 N -0.59 -2.15 8.80 -14.25 -0.13 -2.27 16 10 C 0.42 1.41 6.64 -16.09 -0.11 1.31 16 11 O -0.28 -0.38 2.69 -17.51 -0.05 -0.43 16 12 C 0.18 0.11 1.65 -27.88 -0.05 0.07 16 13 H 0.07 -0.03 4.69 -51.93 -0.24 -0.27 16 14 C -0.54 -3.51 8.89 -34.44 -0.31 -3.81 16 15 H 0.08 0.70 7.81 -52.49 -0.41 0.29 16 16 C 0.09 0.69 5.24 -17.82 -0.09 0.59 16 17 N -0.87 -5.91 10.47 55.43 0.58 -5.33 16 18 Si 0.90 7.87 29.54 -169.99 -5.02 2.85 16 19 H -0.27 -2.57 7.11 56.52 0.40 -2.17 16 20 H -0.27 -2.47 7.11 56.52 0.40 -2.07 16 21 H -0.28 -2.86 7.11 56.52 0.40 -2.46 16 22 C 0.00 0.02 3.49 -3.82 -0.01 0.01 16 23 N -0.27 2.75 0.05 -395.62 -0.02 2.73 16 24 C -0.04 0.40 6.18 60.07 0.37 0.77 16 25 C -0.04 0.52 8.00 60.06 0.48 1.00 16 26 C -0.05 0.53 7.55 60.06 0.45 0.99 16 27 C -0.18 -0.70 5.75 -106.72 -0.61 -1.31 16 28 H 0.06 -0.16 5.65 -51.93 -0.29 -0.46 16 29 H 0.06 0.02 8.03 -51.93 -0.42 -0.39 16 30 H 0.13 0.41 5.20 -51.93 -0.27 0.14 16 31 H 0.13 -0.10 8.04 -52.49 -0.42 -0.52 16 32 H 0.13 -0.18 8.06 -52.49 -0.42 -0.61 16 33 H 0.14 0.25 8.06 -52.49 -0.42 -0.18 16 34 H 0.19 0.06 8.06 -52.49 -0.42 -0.36 16 35 H 0.28 2.13 8.31 -40.82 -0.34 1.79 16 36 H 0.16 -0.37 6.16 -51.93 -0.32 -0.69 16 37 H 0.13 -0.69 8.09 -51.93 -0.42 -1.11 16 38 H 0.12 -1.01 6.57 -51.93 -0.34 -1.36 16 39 H 0.10 -1.23 8.00 -51.93 -0.42 -1.65 16 40 H 0.12 -0.72 4.97 -51.93 -0.26 -0.98 16 41 H 0.11 -1.56 8.12 -51.93 -0.42 -1.98 16 42 H 0.11 -1.62 8.07 -51.93 -0.42 -2.03 16 43 H 0.12 -1.48 8.14 -51.93 -0.42 -1.90 16 44 H 0.12 -0.97 5.84 -51.93 -0.30 -1.28 16 45 H 0.11 -1.43 8.14 -51.93 -0.42 -1.86 16 46 H 0.12 -1.41 8.14 -51.93 -0.42 -1.83 16 LS Contribution 351.89 15.07 5.30 5.30 Total: 0.00 -17.06 351.89 -9.12 -26.18 By element: Atomic # 1 Polarization: -17.28 SS G_CDS: -6.63 Total: -23.91 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -3.04 Total: -2.23 kcal Atomic # 7 Polarization: -8.07 SS G_CDS: 0.30 Total: -7.76 kcal Atomic # 8 Polarization: -0.38 SS G_CDS: -0.05 Total: -0.43 kcal Atomic # 14 Polarization: 7.87 SS G_CDS: -5.02 Total: 2.85 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -17.06 -9.12 -26.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229393609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.474 kcal (2) G-P(sol) polarization free energy of solvation -17.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds