Wall clock time and date at job start Tue Mar 31 2020 11:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.36381 * 120.25038 * 2 1 4 4 C 1.39202 * 120.90489 * 180.25962 * 3 2 1 5 5 C 1.36322 * 121.04323 * 359.43409 * 4 3 2 6 6 C 1.40139 * 119.58238 * 0.27873 * 5 4 3 7 7 N 1.34092 * 122.00306 * 180.02562 * 6 5 4 8 8 C 1.31153 * 120.41036 * 179.97438 * 7 6 5 9 9 N 1.32421 * 122.95088 * 0.02562 * 8 7 6 10 10 C 1.32395 * 121.52727 * 359.97438 * 9 8 7 11 11 O 1.35273 * 120.89609 * 179.97438 * 10 9 8 12 12 C 1.42905 * 116.99465 * 0.02562 * 11 10 9 13 13 H 1.08997 * 109.47541 * 30.00024 * 12 11 10 14 14 C 1.50705 * 109.47070 * 269.99503 * 12 11 10 15 15 H 1.07997 * 119.99671 * 120.00050 * 14 12 11 16 16 C 1.37872 * 120.00184 * 300.00736 * 14 12 11 17 17 N 1.31521 * 120.00060 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 119.99965 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47293 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47155 * 119.99768 * 18 16 14 21 21 H 1.48504 * 109.47052 * 239.99316 * 18 16 14 22 22 C 1.52998 * 109.47189 * 149.99983 * 12 11 10 23 23 N 1.46906 * 109.47250 * 292.27899 * 22 12 11 24 24 C 1.46905 * 109.46880 * 63.97810 * 23 22 12 25 25 C 1.46893 * 109.47334 * 183.97674 * 23 22 12 26 26 C 1.46898 * 109.47072 * 303.98259 * 23 22 12 27 27 C 1.39969 * 120.24969 * 179.70391 * 2 1 3 28 28 H 1.08994 * 109.46596 * 263.15056 * 1 2 3 29 29 H 1.09002 * 109.46847 * 23.15240 * 1 2 3 30 30 H 1.08996 * 109.47133 * 143.14804 * 1 2 3 31 31 H 1.07997 * 119.54853 * 359.97154 * 3 2 1 32 32 H 1.08000 * 119.47621 * 179.71167 * 4 3 2 33 33 H 1.07998 * 120.21316 * 180.29886 * 5 4 3 34 34 H 1.07999 * 118.52604 * 179.97438 * 8 7 6 35 35 H 0.96996 * 119.99716 * 180.02562 * 17 16 14 36 36 H 1.09005 * 109.47323 * 52.27750 * 22 12 11 37 37 H 1.09001 * 109.47661 * 172.27926 * 22 12 11 38 38 H 1.08997 * 109.47162 * 50.28526 * 24 23 22 39 39 H 1.08996 * 109.46823 * 170.28448 * 24 23 22 40 40 H 1.09000 * 109.47116 * 290.28458 * 24 23 22 41 41 H 1.09003 * 109.47108 * 60.00025 * 25 23 22 42 42 H 1.09006 * 109.47363 * 180.02562 * 25 23 22 43 43 H 1.08996 * 109.47579 * 300.00011 * 25 23 22 44 44 H 1.08997 * 109.47154 * 59.99084 * 26 23 22 45 45 H 1.08996 * 109.47557 * 179.97438 * 26 23 22 46 46 H 1.09003 * 109.46697 * 299.99562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1942 1.1781 0.0000 4 6 3.5861 1.1940 -0.0054 5 6 4.3024 0.0342 0.0007 6 6 3.6290 -1.1948 0.0066 7 7 4.2848 -2.3644 0.0133 8 6 3.6229 -3.4966 0.0192 9 7 2.3001 -3.5576 0.0186 10 6 1.5565 -2.4622 0.0123 11 8 0.2060 -2.5394 0.0113 12 6 -0.3689 -3.8477 0.0178 13 1 0.2990 -4.5356 0.5361 14 6 -0.5696 -4.3153 -1.4008 15 1 -0.0775 -5.2115 -1.7486 16 6 -1.3812 -3.5989 -2.2545 17 7 -1.9808 -2.5076 -1.8308 18 14 -1.6293 -4.1781 -4.0130 19 1 -0.8502 -5.4219 -4.2391 20 1 -3.0709 -4.4470 -4.2468 21 1 -1.1637 -3.1253 -4.9512 22 6 -1.7186 -3.8081 0.7373 23 7 -1.5048 -3.5325 2.1644 24 6 -0.9170 -2.1954 2.3222 25 6 -2.7909 -3.5886 2.8720 26 6 -0.5926 -4.5377 2.7259 27 6 2.2122 -1.2091 0.0062 28 1 -0.3632 -0.1226 1.0203 29 1 -0.3633 0.9449 -0.4041 30 1 -0.3633 -0.8223 -0.6163 31 1 1.6509 2.1115 -0.0005 32 1 4.1067 2.1402 -0.0100 33 1 5.3820 0.0622 0.0012 34 1 4.1818 -4.4208 0.0240 35 1 -2.5521 -2.0039 -2.4314 36 1 -2.3382 -3.0227 0.3045 37 1 -2.2192 -4.7697 0.6240 38 1 -1.5045 -1.4714 1.7577 39 1 -0.9176 -1.9206 3.3769 40 1 0.1070 -2.2024 1.9490 41 1 -3.2270 -4.5807 2.7549 42 1 -2.6323 -3.3837 3.9308 43 1 -3.4677 -2.8427 2.4553 44 1 0.3616 -4.4961 2.2008 45 1 -0.4336 -4.3330 3.7846 46 1 -1.0287 -5.5298 2.6088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229393609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:34 Heat of formation + Delta-G solvation = 136.221898 kcal Electronic energy + Delta-G solvation = -28751.436231 eV Core-core repulsion = 25146.372026 eV Total energy + Delta-G solvation = -3605.064205 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.177 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.98638 -42.17322 -39.47410 -38.63542 -35.54447 -34.39240 -33.05153 -32.01162 -31.17594 -29.63390 -29.55754 -27.93245 -27.84739 -25.62295 -25.42749 -24.55600 -22.57722 -22.16703 -20.05347 -19.21365 -18.70982 -18.61005 -17.86753 -17.70047 -17.34488 -16.78634 -16.58436 -16.47404 -16.01388 -15.19653 -15.07717 -14.64702 -14.52261 -14.41858 -14.32691 -14.10807 -13.71334 -13.38817 -13.34962 -13.29259 -13.25177 -13.22285 -13.08625 -12.99845 -12.95326 -12.77306 -12.70173 -12.43230 -12.15564 -11.79764 -11.69942 -11.19625 -10.86447 -10.71689 -10.20939 -10.14596 -8.96030 -8.45514 -6.57163 -0.55478 -0.23959 0.92394 0.95356 1.27220 1.41929 1.48524 1.94434 2.07333 2.25683 2.78804 3.01299 3.04681 3.07868 3.14424 3.23926 3.29350 3.65578 3.73167 3.90266 3.96269 4.03989 4.22085 4.22600 4.25867 4.30410 4.37220 4.42130 4.45262 4.51377 4.55978 4.63480 4.73845 4.75710 4.78035 4.81715 4.87708 4.89928 5.02657 5.19258 5.29556 5.36849 5.47172 5.53354 5.62063 5.77779 5.91634 6.05902 6.28935 6.63095 7.22057 7.24735 8.54527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.023 4.023 3 C -0.152 4.152 4 C -0.057 4.057 5 C -0.145 4.145 6 C 0.160 3.840 7 N -0.568 5.568 8 C 0.332 3.668 9 N -0.600 5.600 10 C 0.414 3.586 11 O -0.262 6.262 12 C 0.181 3.819 13 H 0.081 0.919 14 C -0.552 4.552 15 H 0.050 0.950 16 C 0.077 3.923 17 N -0.856 5.856 18 Si 0.912 3.088 19 H -0.285 1.285 20 H -0.275 1.275 21 H -0.301 1.301 22 C 0.017 3.983 23 N -0.260 5.260 24 C -0.049 4.049 25 C -0.043 4.043 26 C -0.053 4.053 27 C -0.196 4.196 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.153 0.847 32 H 0.160 0.840 33 H 0.142 0.858 34 H 0.215 0.785 35 H 0.272 0.728 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.117 0.883 39 H 0.143 0.857 40 H 0.089 0.911 41 H 0.126 0.874 42 H 0.140 0.860 43 H 0.116 0.884 44 H 0.090 0.910 45 H 0.143 0.857 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.796 1.023 19.228 20.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.025 4.025 3 C -0.170 4.170 4 C -0.077 4.077 5 C -0.164 4.164 6 C 0.036 3.964 7 N -0.289 5.289 8 C 0.043 3.957 9 N -0.335 5.335 10 C 0.217 3.783 11 O -0.162 6.162 12 C 0.128 3.872 13 H 0.098 0.902 14 C -0.590 4.590 15 H 0.069 0.931 16 C -0.131 4.131 17 N -0.492 5.492 18 Si 0.742 3.258 19 H -0.210 1.210 20 H -0.201 1.201 21 H -0.229 1.229 22 C -0.104 4.104 23 N 0.082 4.918 24 C -0.190 4.190 25 C -0.183 4.183 26 C -0.194 4.194 27 C -0.202 4.202 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.171 0.829 32 H 0.178 0.822 33 H 0.160 0.840 34 H 0.231 0.769 35 H 0.082 0.918 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.135 0.865 39 H 0.161 0.839 40 H 0.108 0.892 41 H 0.145 0.855 42 H 0.159 0.841 43 H 0.135 0.865 44 H 0.109 0.891 45 H 0.161 0.839 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.640 0.589 19.192 20.012 hybrid contribution -0.065 0.095 -2.168 2.171 sum -5.705 0.684 17.024 17.967 Atomic orbital electron populations 1.21345 0.88431 1.04575 1.04252 1.20011 0.97734 0.91125 0.93673 1.21189 0.94443 0.98490 1.02864 1.21386 0.94323 0.98907 0.93097 1.20851 1.01106 0.89915 1.04556 1.19172 0.89124 0.93803 0.94315 1.68820 1.40467 0.98507 1.21105 1.25059 0.86389 0.96838 0.87435 1.68158 1.08828 1.31328 1.25215 1.20531 0.86493 0.88412 0.82895 1.86685 1.11764 1.35476 1.82319 1.20535 0.90128 0.80500 0.96068 0.90166 1.21303 1.29341 1.11287 0.97039 0.93128 1.25027 0.94526 0.94477 0.99077 1.69588 1.28902 1.14250 1.36470 0.86233 0.78092 0.77930 0.83523 1.21022 1.20055 1.22862 1.24204 1.01122 1.09238 0.75815 1.46048 1.16035 1.14730 1.14958 1.24444 1.03156 0.82811 1.08599 1.24251 0.83025 1.09535 1.01501 1.24248 0.96266 0.94607 1.04245 1.18929 0.94635 0.93850 1.12741 0.88695 0.91229 0.88236 0.82926 0.82220 0.84032 0.76919 0.91766 0.84067 0.84266 0.86469 0.83874 0.89227 0.85533 0.84147 0.86526 0.89133 0.83905 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.10 8.77 71.24 0.63 0.53 16 2 C -0.02 -0.11 5.88 -19.88 -0.12 -0.22 16 3 C -0.15 -0.24 9.59 22.07 0.21 -0.03 16 4 C -0.06 -0.10 9.95 22.05 0.22 0.12 16 5 C -0.15 -0.97 10.01 22.28 0.22 -0.75 16 6 C 0.16 1.78 6.61 40.11 0.27 2.04 16 7 N -0.57 -6.91 10.45 -193.89 -2.03 -8.93 16 8 C 0.33 2.96 12.22 180.89 2.21 5.17 16 9 N -0.60 -5.56 8.80 -312.01 -2.75 -8.30 16 10 C 0.41 3.45 6.64 85.39 0.57 4.02 16 11 O -0.26 -1.00 2.69 -85.58 -0.23 -1.23 16 12 C 0.18 0.41 1.65 29.85 0.05 0.46 16 13 H 0.08 0.04 4.69 -2.39 -0.01 0.03 16 14 C -0.55 -8.34 8.89 25.60 0.23 -8.12 16 15 H 0.05 1.04 7.81 -2.91 -0.02 1.02 16 16 C 0.08 1.37 5.24 84.65 0.44 1.81 16 17 N -0.86 -12.81 10.47 21.45 0.22 -12.58 16 18 Si 0.91 18.55 29.54 68.60 2.03 20.58 16 19 H -0.28 -6.54 7.11 99.48 0.71 -5.83 16 20 H -0.28 -5.51 7.11 99.48 0.71 -4.80 16 21 H -0.30 -7.34 7.11 99.48 0.71 -6.64 16 22 C 0.02 -0.16 3.49 86.30 0.30 0.14 16 23 N -0.26 5.70 0.05 ******* -0.07 5.63 16 24 C -0.05 0.96 6.18 127.69 0.79 1.74 16 25 C -0.04 1.24 8.00 127.69 1.02 2.27 16 26 C -0.05 1.23 7.55 127.69 0.96 2.19 16 27 C -0.20 -1.78 5.75 -21.22 -0.12 -1.90 16 28 H 0.09 -0.60 5.65 -2.39 -0.01 -0.62 16 29 H 0.07 -0.01 8.03 -2.39 -0.02 -0.03 16 30 H 0.10 0.71 5.20 -2.39 -0.01 0.70 16 31 H 0.15 -0.57 8.04 -2.91 -0.02 -0.59 16 32 H 0.16 -0.74 8.06 -2.91 -0.02 -0.76 16 33 H 0.14 0.67 8.06 -2.91 -0.02 0.65 16 34 H 0.21 0.50 8.06 -2.91 -0.02 0.48 16 35 H 0.27 4.52 8.31 -92.71 -0.77 3.75 16 36 H 0.14 -0.69 6.16 -2.38 -0.01 -0.71 16 37 H 0.14 -1.63 8.09 -2.39 -0.02 -1.65 16 38 H 0.12 -2.07 6.57 -2.39 -0.02 -2.09 16 39 H 0.14 -3.91 8.00 -2.39 -0.02 -3.93 16 40 H 0.09 -1.10 4.97 -2.39 -0.01 -1.11 16 41 H 0.13 -3.83 8.12 -2.39 -0.02 -3.85 16 42 H 0.14 -4.77 8.07 -2.38 -0.02 -4.79 16 43 H 0.12 -3.23 8.14 -2.39 -0.02 -3.25 16 44 H 0.09 -1.45 5.84 -2.39 -0.01 -1.47 16 45 H 0.14 -4.21 8.14 -2.39 -0.02 -4.23 16 46 H 0.13 -3.45 8.14 -2.39 -0.02 -3.47 16 Total: 0.00 -44.60 351.89 6.05 -38.56 By element: Atomic # 1 Polarization: -44.19 SS G_CDS: 0.99 Total: -43.20 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 7.88 Total: 9.48 kcal Atomic # 7 Polarization: -19.58 SS G_CDS: -4.62 Total: -24.19 kcal Atomic # 8 Polarization: -1.00 SS G_CDS: -0.23 Total: -1.23 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: 2.03 Total: 20.58 kcal Total: -44.60 6.05 -38.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229393609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.778 kcal (2) G-P(sol) polarization free energy of solvation -44.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds