Wall clock time and date at job start Tue Mar 31 2020 11:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 120.00032 * 2 1 4 4 C 1.52999 * 109.99260 * 240.37028 * 3 2 1 5 5 C 1.54106 * 109.87695 * 119.28866 * 3 2 1 6 6 C 1.54809 * 104.18494 * 242.60544 * 5 3 2 7 7 C 1.54996 * 102.09719 * 20.88214 * 6 5 3 8 8 H 1.09000 * 110.75160 * 81.53643 * 7 6 5 9 9 C 1.53001 * 110.62049 * 204.47844 * 7 6 5 10 10 C 1.53004 * 109.46958 * 172.26699 * 9 7 6 11 11 C 1.52996 * 109.47313 * 52.26159 * 9 7 6 12 12 O 1.42905 * 109.46831 * 292.26169 * 9 7 6 13 13 C 1.35642 * 117.00131 * 303.12410 * 12 9 7 14 14 C 1.38454 * 120.26216 * 355.04324 * 13 12 9 15 15 C 1.38307 * 120.04602 * 180.23493 * 14 13 12 16 16 C 1.38820 * 120.59194 * 359.78765 * 15 14 13 17 17 C 1.36489 * 120.54039 * 359.97401 * 16 15 14 18 18 C 1.40723 * 119.92908 * 0.02562 * 17 16 15 19 19 C 1.41153 * 120.28938 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99882 * 150.58112 * 19 18 17 21 21 C 1.39927 * 120.00244 * 330.58609 * 19 18 17 22 22 N 1.30867 * 119.99853 * 336.29568 * 21 19 18 23 23 Si 1.86804 * 120.00258 * 156.29946 * 21 19 18 24 24 H 1.48498 * 109.47202 * 59.99756 * 23 21 19 25 25 H 1.48496 * 109.46809 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46998 * 299.99769 * 23 21 19 27 27 O 1.43749 * 109.88136 * 1.45686 * 3 2 1 28 28 H 1.08000 * 119.99603 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.99530 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.99530 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47053 * 179.62782 * 4 3 2 32 32 H 1.08993 * 109.47657 * 299.63105 * 4 3 2 33 33 H 1.09003 * 109.46875 * 59.63357 * 4 3 2 34 34 H 1.09001 * 110.48733 * 1.28139 * 5 3 2 35 35 H 1.08993 * 110.48769 * 123.93208 * 5 3 2 36 36 H 1.09001 * 110.91010 * 262.67862 * 6 5 3 37 37 H 1.09001 * 110.90808 * 139.07716 * 6 5 3 38 38 H 1.09007 * 109.46554 * 203.94377 * 10 9 7 39 39 H 1.08997 * 109.46927 * 323.94150 * 10 9 7 40 40 H 1.08998 * 109.47068 * 83.94467 * 10 9 7 41 41 H 1.08999 * 109.47330 * 291.13108 * 11 9 7 42 42 H 1.09000 * 109.46818 * 51.13145 * 11 9 7 43 43 H 1.09004 * 109.46769 * 171.12650 * 11 9 7 44 44 H 1.07994 * 119.97967 * 359.97438 * 14 13 12 45 45 H 1.07997 * 119.70518 * 179.76259 * 15 14 13 46 46 H 1.08002 * 119.72982 * 179.97438 * 16 15 14 47 47 H 1.08001 * 120.03668 * 180.02562 * 17 16 15 48 48 H 0.97003 * 120.00179 * 357.92474 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9407 1.4027 -1.2498 5 6 2.9395 1.4043 1.2640 6 6 2.3739 2.6297 2.0223 7 6 0.9501 2.7540 1.4226 8 1 0.2655 2.0564 1.9051 9 6 0.4344 4.1887 1.5516 10 6 -0.8826 4.3280 0.7852 11 6 1.4674 5.1562 0.9706 12 8 0.2177 4.4948 2.9305 13 6 -0.6269 3.6844 3.6159 14 6 -1.3162 2.6792 2.9589 15 6 -2.1800 1.8586 3.6613 16 6 -2.3624 2.0287 5.0269 17 6 -1.6915 3.0088 5.6995 18 6 -0.8071 3.8564 5.0069 19 6 -0.1099 4.8728 5.6948 20 1 0.8595 5.1950 5.3442 21 6 -0.6745 5.4629 6.8310 22 7 -1.9717 5.4431 7.0025 23 14 0.4234 6.2789 8.1032 24 1 1.1835 7.3837 7.4653 25 1 -0.4132 6.8243 9.2021 26 1 1.3726 5.2779 8.6529 27 8 1.1377 2.4041 0.0344 28 1 -0.5399 -0.9353 -0.0004 29 1 -0.5399 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 3.4764 2.3519 -1.2445 32 1 3.6571 0.5812 -1.2560 33 1 2.3134 1.3445 -2.1393 34 1 2.8407 0.5027 1.8684 35 1 3.9821 1.5710 0.9935 36 1 2.9633 3.5226 1.8133 37 1 2.3290 2.4371 3.0942 38 1 -1.0341 5.3719 0.5101 39 1 -0.8448 3.7165 -0.1162 40 1 -1.7069 3.9952 1.4159 41 1 2.3499 5.1726 1.6102 42 1 1.7498 4.8283 -0.0299 43 1 1.0384 6.1568 0.9175 44 1 -1.1824 2.5385 1.8966 45 1 -2.7177 1.0787 3.1426 46 1 -3.0407 1.3802 5.5615 47 1 -1.8393 3.1336 6.7620 48 1 -2.5442 5.0461 6.3275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230275613.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:33 Heat of formation + Delta-G solvation = -33.200051 kcal Electronic energy + Delta-G solvation = -28431.684614 eV Core-core repulsion = 24838.751142 eV Total energy + Delta-G solvation = -3592.933471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.67943 -38.90749 -36.72663 -34.05594 -33.78591 -32.32463 -31.97563 -30.14098 -29.52600 -28.92231 -26.85109 -25.75476 -24.90492 -22.97914 -21.53461 -21.25311 -20.90049 -19.40636 -19.28010 -17.90373 -16.67939 -16.45741 -15.48203 -15.35551 -14.83719 -14.62825 -14.43432 -14.03483 -13.85232 -13.37298 -13.11036 -13.03051 -12.90823 -12.81810 -12.44829 -12.33909 -12.05862 -12.02598 -11.86461 -11.71983 -11.42530 -11.39564 -11.26979 -11.16626 -10.92521 -10.86884 -10.62381 -10.54092 -10.35356 -10.20129 -9.88646 -9.77166 -9.40957 -9.36244 -9.11009 -8.89344 -7.59760 -7.25684 -6.92523 -4.29078 2.30483 2.70480 2.82537 3.20282 3.29436 3.40321 3.73976 4.08076 4.25822 4.62538 4.65994 4.73111 4.75276 5.03362 5.14097 5.26904 5.29268 5.31421 5.46127 5.48769 5.52617 5.65352 5.72266 5.82969 5.86070 5.92243 5.97956 6.05240 6.06802 6.07968 6.15057 6.17928 6.20746 6.22153 6.28769 6.38931 6.50921 6.62244 6.63242 6.74853 6.82759 7.04413 7.14375 7.18006 7.53499 7.63586 7.82744 7.94878 8.13739 8.24169 8.42879 8.90930 8.99208 10.16004 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.017075 B = 0.004479 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.385814 B = 6249.266516 C = 6839.431313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.181 4.181 3 C 0.130 3.870 4 C -0.135 4.135 5 C -0.141 4.141 6 C -0.147 4.147 7 C 0.036 3.964 8 H 0.104 0.896 9 C 0.125 3.875 10 C -0.190 4.190 11 C -0.134 4.134 12 O -0.288 6.288 13 C 0.014 3.986 14 C -0.182 4.182 15 C -0.225 4.225 16 C -0.109 4.109 17 C -0.198 4.198 18 C 0.086 3.914 19 C -0.509 4.509 20 H 0.078 0.922 21 C 0.036 3.964 22 N -0.805 5.805 23 Si 1.067 2.933 24 H -0.277 1.277 25 H -0.275 1.275 26 H -0.276 1.276 27 O -0.357 6.357 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.118 0.882 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.108 0.892 48 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.772 -6.045 -11.774 15.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.199 4.199 3 C 0.090 3.910 4 C -0.193 4.193 5 C -0.178 4.178 6 C -0.184 4.184 7 C -0.021 4.021 8 H 0.121 0.879 9 C 0.086 3.914 10 C -0.247 4.247 11 C -0.190 4.190 12 O -0.204 6.204 13 C -0.030 4.030 14 C -0.201 4.201 15 C -0.245 4.245 16 C -0.127 4.127 17 C -0.218 4.218 18 C 0.083 3.917 19 C -0.537 4.537 20 H 0.096 0.904 21 C -0.184 4.184 22 N -0.429 5.429 23 Si 0.891 3.109 24 H -0.202 1.202 25 H -0.200 1.200 26 H -0.201 1.201 27 O -0.276 6.276 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.136 0.864 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.126 0.874 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.702 -4.951 -10.418 13.870 hybrid contribution -0.157 -1.323 -1.471 1.985 sum 7.545 -6.274 -11.889 15.415 Atomic orbital electron populations 1.23896 0.96223 1.02245 0.98405 1.23278 0.96619 0.97680 1.02330 1.20972 0.88647 0.85598 0.95777 1.21817 0.98710 1.02196 0.96528 1.22966 0.99555 0.99414 0.95901 1.23148 0.96092 0.98104 1.01057 1.24310 0.97550 0.98056 0.82136 0.87917 1.21309 0.95285 0.92271 0.82530 1.22754 0.98431 1.02449 1.01107 1.21800 0.98202 0.98482 1.00557 1.86124 1.62529 1.51512 1.20185 1.19072 0.97549 0.95179 0.91240 1.21231 1.01416 0.98606 0.98841 1.20128 1.05949 1.03923 0.94506 1.20306 0.99744 0.98362 0.94310 1.20662 1.04101 0.98304 0.98735 1.17108 0.93153 0.93795 0.87657 1.20341 1.05666 1.17718 1.09982 0.90367 1.26952 0.97241 0.95571 0.98684 1.70494 1.04700 1.30828 1.36918 0.83611 0.75149 0.76719 0.75465 1.20230 1.20001 1.20124 1.88812 1.63844 1.49885 1.25091 0.88677 0.87527 0.87038 0.91797 0.91515 0.92033 0.90733 0.90544 0.90082 0.89942 0.92322 0.91287 0.89867 0.91711 0.90639 0.92025 0.86409 0.89267 0.89307 0.87443 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 13.66 29.01 0.40 -1.81 16 2 C -0.18 -2.20 8.54 -36.03 -0.31 -2.51 16 3 C 0.13 1.63 1.16 -91.20 -0.11 1.52 16 4 C -0.14 -1.37 8.66 37.16 0.32 -1.05 16 5 C -0.14 -1.75 6.26 -25.20 -0.16 -1.91 16 6 C -0.15 -2.23 6.31 -24.72 -0.16 -2.39 16 7 C 0.04 0.60 1.57 -25.68 -0.04 0.56 16 8 H 0.10 1.91 4.15 -51.93 -0.22 1.69 16 9 C 0.13 2.23 0.67 -90.62 -0.06 2.17 16 10 C -0.19 -3.25 8.05 37.16 0.30 -2.95 16 11 C -0.13 -2.03 8.06 37.16 0.30 -1.73 16 12 O -0.29 -6.48 9.01 -18.63 -0.17 -6.65 16 13 C 0.01 0.33 6.08 -38.33 -0.23 0.10 16 14 C -0.18 -3.98 5.82 -39.48 -0.23 -4.21 16 15 C -0.23 -4.95 10.04 -39.34 -0.39 -5.34 16 16 C -0.11 -2.50 9.97 -40.00 -0.40 -2.90 16 17 C -0.20 -5.05 7.84 -39.27 -0.31 -5.36 16 18 C 0.09 2.28 5.24 -106.68 -0.56 1.72 16 19 C -0.51 -13.71 8.61 -37.84 -0.33 -14.03 16 20 H 0.08 2.11 7.79 -52.48 -0.41 1.70 16 21 C 0.04 0.93 4.95 -17.33 -0.09 0.84 16 22 N -0.81 -21.75 12.55 55.55 0.70 -21.06 16 23 Si 1.07 22.10 29.99 -169.99 -5.10 17.00 16 24 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 26 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 27 O -0.36 -5.28 7.49 -35.23 -0.26 -5.54 16 28 H 0.09 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.11 1.54 6.59 -52.49 -0.35 1.20 16 30 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.91 7.69 -51.93 -0.40 0.51 16 35 H 0.08 0.80 7.70 -51.93 -0.40 0.40 16 36 H 0.08 1.17 5.74 -51.93 -0.30 0.87 16 37 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.06 0.94 7.77 -51.93 -0.40 0.53 16 39 H 0.07 1.07 7.13 -51.93 -0.37 0.70 16 40 H 0.08 1.58 4.95 -51.93 -0.26 1.32 16 41 H 0.06 0.97 6.50 -51.93 -0.34 0.63 16 42 H 0.07 1.02 7.55 -51.93 -0.39 0.63 16 43 H 0.06 0.91 7.92 -51.93 -0.41 0.50 16 44 H 0.12 2.32 3.58 -52.49 -0.19 2.13 16 45 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 46 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 47 H 0.11 2.81 6.72 -52.49 -0.35 2.46 16 48 H 0.30 8.25 6.53 -40.82 -0.27 7.99 16 LS Contribution 364.94 15.07 5.50 5.50 Total: -1.00 -27.97 364.94 -8.60 -36.57 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -7.22 Total: 13.47 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: -2.05 Total: -39.29 kcal Atomic # 7 Polarization: -21.75 SS G_CDS: 0.70 Total: -21.06 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.43 Total: -12.19 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.10 Total: 17.00 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.97 -8.60 -36.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275613.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.371 kcal (2) G-P(sol) polarization free energy of solvation -27.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds