Wall clock time and date at job start Tue Mar 31 2020 11:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.52102 * 119.99693 * 2 1 4 4 C 1.53362 * 107.35366 * 122.29716 * 3 2 1 5 5 C 1.52778 * 107.66652 * 240.00424 * 3 2 1 6 6 C 1.52880 * 110.15843 * 166.46274 * 5 3 2 7 7 C 1.52896 * 108.54823 * 300.63983 * 6 5 3 8 8 H 1.09256 * 109.36844 * 299.27894 * 7 6 5 9 9 O 1.43049 * 109.47588 * 179.87446 * 7 6 5 10 10 C 1.35645 * 117.00274 * 83.91385 * 9 7 6 11 11 C 1.38453 * 120.26114 * 2.55547 * 10 9 7 12 12 C 1.38301 * 120.04715 * 179.97438 * 11 10 9 13 13 C 1.38820 * 120.59867 * 359.97438 * 12 11 10 14 14 C 1.36491 * 120.53123 * 0.02562 * 13 12 11 15 15 C 1.40724 * 119.93491 * 359.97438 * 14 13 12 16 16 C 1.41148 * 120.29275 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00235 * 209.66102 * 16 15 14 18 18 C 1.39935 * 120.00106 * 29.65520 * 16 15 14 19 19 N 1.30863 * 119.99758 * 10.56117 * 18 16 15 20 20 Si 1.86795 * 119.99997 * 190.55338 * 18 16 15 21 21 H 1.48497 * 109.47068 * 90.00428 * 20 18 16 22 22 H 1.48508 * 109.47154 * 210.00428 * 20 18 16 23 23 H 1.48500 * 109.47461 * 330.00090 * 20 18 16 24 24 C 1.52804 * 110.09742 * 59.48131 * 7 6 5 25 25 C 1.53369 * 109.39171 * 76.85530 * 24 7 6 26 26 C 1.54371 * 107.70059 * 193.27639 * 24 7 6 27 27 O 1.40821 * 108.33023 * 2.28517 * 3 2 1 28 28 H 1.08001 * 120.00010 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.99791 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.00010 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47261 * 176.56518 * 4 3 2 32 32 H 1.09000 * 109.46868 * 296.56676 * 4 3 2 33 33 H 1.09002 * 109.47061 * 56.56240 * 4 3 2 34 34 H 1.09208 * 109.46490 * 46.07529 * 5 3 2 35 35 H 1.09223 * 109.44169 * 286.82371 * 5 3 2 36 36 H 1.09433 * 109.17376 * 181.75090 * 6 5 3 37 37 H 1.08638 * 110.54564 * 62.04234 * 6 5 3 38 38 H 1.08001 * 119.97417 * 0.24819 * 11 10 9 39 39 H 1.08006 * 119.70366 * 179.97438 * 12 11 10 40 40 H 1.07996 * 119.73535 * 179.97438 * 13 12 11 41 41 H 1.08010 * 120.03400 * 180.02562 * 14 13 12 42 42 H 0.97002 * 119.99683 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.47260 * 59.99770 * 25 24 7 44 44 H 1.08999 * 109.47295 * 180.02562 * 25 24 7 45 45 H 1.09004 * 109.46531 * 299.99934 * 25 24 7 46 46 H 1.09009 * 109.46831 * 59.99429 * 26 24 7 47 47 H 1.08989 * 109.47408 * 179.97438 * 26 24 7 48 48 H 1.09004 * 109.47035 * 300.00389 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0705 1.3173 0.0000 4 6 2.9766 1.3224 1.2373 5 6 2.9326 1.3550 -1.2608 6 6 3.4593 2.7707 -1.4967 7 6 2.2660 3.7147 -1.6472 8 1 1.6641 3.4041 -2.5045 9 8 2.7370 5.0476 -1.8663 10 6 3.0571 5.3860 -3.1402 11 6 2.8739 4.4791 -4.1701 12 6 3.2012 4.8290 -5.4675 13 6 3.7143 6.0872 -5.7519 14 6 3.9047 6.9999 -4.7551 15 6 3.5793 6.6675 -3.4270 16 6 3.7736 7.6054 -2.3902 17 1 3.9941 7.2657 -1.3890 18 6 3.6808 8.9755 -2.6596 19 7 3.2144 9.3856 -3.8114 20 14 4.2224 10.2187 -1.3750 21 1 5.6615 10.5317 -1.5649 22 1 3.4222 11.4613 -1.5203 23 1 4.0140 9.6516 -0.0184 24 6 1.4061 3.6794 -0.3846 25 6 2.0871 4.4990 0.7184 26 6 0.0645 4.3699 -0.7109 27 8 1.1351 2.3686 0.0533 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 3.5842 2.2273 1.2390 32 1 2.3624 1.2955 2.1375 33 1 3.6270 0.4480 1.2150 34 1 2.3353 1.0414 -2.1196 35 1 3.7744 0.6685 -1.1462 36 1 4.0479 2.7861 -2.4192 37 1 4.0920 3.0846 -0.6714 38 1 2.4708 3.4992 -3.9609 39 1 3.0564 4.1171 -6.2666 40 1 3.9656 6.3456 -6.7699 41 1 4.3041 7.9767 -4.9855 42 1 3.1498 10.3354 -3.9980 43 1 2.2031 5.5304 0.3857 44 1 1.4750 4.4743 1.6200 45 1 3.0677 4.0742 0.9337 46 1 -0.4309 3.8362 -1.5221 47 1 -0.5734 4.3604 0.1727 48 1 0.2506 5.4002 -1.0142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276533.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:57 Heat of formation + Delta-G solvation = -46.757236 kcal Electronic energy + Delta-G solvation = -28054.404334 eV Core-core repulsion = 24460.882979 eV Total energy + Delta-G solvation = -3593.521355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.44172 -38.47964 -36.37563 -35.01856 -33.54867 -33.00220 -31.76178 -29.84470 -29.38644 -28.57542 -26.94062 -25.86334 -25.07899 -23.50547 -21.95544 -21.07054 -20.60296 -20.07811 -18.15111 -17.45051 -16.64068 -16.01738 -15.98031 -15.36613 -14.95336 -14.63976 -14.16965 -14.14905 -13.94524 -13.60346 -13.20385 -12.88689 -12.75854 -12.71895 -12.54506 -12.36410 -12.15178 -11.89544 -11.78869 -11.69248 -11.54382 -11.44221 -11.23086 -11.11308 -10.97915 -10.81717 -10.71081 -10.42016 -10.40352 -10.11924 -9.76043 -9.60459 -9.52022 -9.31710 -9.17933 -9.04628 -7.43102 -6.96320 -6.61991 -4.24147 2.28970 2.77447 2.98960 3.11729 3.15663 3.22166 3.41282 4.00227 4.16388 4.65325 4.69895 4.84106 4.86560 5.01188 5.03997 5.24445 5.30606 5.40664 5.48986 5.56025 5.60962 5.65857 5.72732 5.88276 5.91399 5.98866 6.01277 6.04217 6.09361 6.11507 6.18272 6.23256 6.26614 6.32668 6.43785 6.50996 6.57345 6.60251 6.65939 6.76729 6.95033 7.14624 7.31833 7.38421 7.74129 7.78621 7.91982 8.07219 8.23659 8.42779 8.74191 8.90194 9.09262 10.30361 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.016245 B = 0.004329 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.231676 B = 6466.964394 C = 7431.608358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.161 4.161 3 C 0.163 3.837 4 C -0.168 4.168 5 C -0.136 4.136 6 C -0.146 4.146 7 C 0.067 3.933 8 H 0.069 0.931 9 O -0.290 6.290 10 C 0.018 3.982 11 C -0.182 4.182 12 C -0.208 4.208 13 C -0.131 4.131 14 C -0.137 4.137 15 C 0.098 3.902 16 C -0.447 4.447 17 H 0.079 0.921 18 C 0.072 3.928 19 N -0.807 5.807 20 Si 0.909 3.091 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.263 1.263 24 C 0.142 3.858 25 C -0.164 4.164 26 C -0.140 4.140 27 O -0.371 6.371 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.124 0.876 42 H 0.278 0.722 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.428 -12.654 7.008 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.179 4.179 3 C 0.123 3.877 4 C -0.225 4.225 5 C -0.174 4.174 6 C -0.184 4.184 7 C 0.009 3.991 8 H 0.087 0.913 9 O -0.204 6.204 10 C -0.026 4.026 11 C -0.201 4.201 12 C -0.228 4.228 13 C -0.149 4.149 14 C -0.157 4.157 15 C 0.095 3.905 16 C -0.477 4.477 17 H 0.098 0.902 18 C -0.144 4.144 19 N -0.434 5.434 20 Si 0.734 3.266 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.187 1.187 24 C 0.103 3.897 25 C -0.222 4.222 26 C -0.197 4.197 27 O -0.291 6.291 28 H 0.129 0.871 29 H 0.110 0.890 30 H 0.134 0.866 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.142 0.858 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.638 -12.332 7.123 14.484 hybrid contribution 0.473 0.337 0.099 0.589 sum -2.165 -11.995 7.222 14.168 Atomic orbital electron populations 1.23849 0.96268 1.02030 0.98765 1.23239 0.96375 0.96194 1.02043 1.20053 0.88307 0.85161 0.94139 1.22464 0.99590 1.02300 0.98163 1.22100 0.99825 0.97642 0.97834 1.22013 0.98716 0.93997 1.03670 1.22589 0.94735 0.84106 0.97693 0.91275 1.86040 1.80897 1.27173 1.26316 1.19254 1.05004 0.96490 0.81885 1.20628 1.07369 0.98279 0.93843 1.20158 1.10585 0.97201 0.94810 1.20400 1.02534 0.94314 0.97696 1.20921 1.03395 0.99441 0.91949 1.17045 0.91123 0.88787 0.93548 1.19366 1.41924 0.89936 0.96486 0.90238 1.25842 0.92885 0.99556 0.96089 1.69803 1.33994 1.16945 1.22699 0.86299 0.79293 0.79437 0.81600 1.19512 1.20435 1.18661 1.21114 0.95410 0.80989 0.92198 1.22391 0.99983 1.01876 0.97919 1.22192 0.95009 1.01053 1.01449 1.86200 1.41889 1.17104 1.83929 0.87113 0.88998 0.86611 0.91896 0.91959 0.91863 0.91237 0.90643 0.90603 0.90717 0.88692 0.89478 0.89398 0.85804 0.91129 0.89794 0.92696 0.92830 0.92600 0.92143 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 14.06 29.01 0.41 -1.45 16 2 C -0.16 -1.75 8.53 -35.33 -0.30 -2.05 16 3 C 0.16 2.02 1.07 -91.00 -0.10 1.92 16 4 C -0.17 -1.88 8.39 37.34 0.31 -1.56 16 5 C -0.14 -1.73 4.74 -26.91 -0.13 -1.85 16 6 C -0.15 -2.27 5.12 -26.85 -0.14 -2.41 16 7 C 0.07 1.17 1.32 -26.89 -0.04 1.13 16 8 H 0.07 1.26 5.81 -51.78 -0.30 0.96 16 9 O -0.29 -6.28 7.61 -18.64 -0.14 -6.42 16 10 C 0.02 0.43 6.60 -38.33 -0.25 0.18 16 11 C -0.18 -4.07 8.35 -39.48 -0.33 -4.40 16 12 C -0.21 -4.65 10.04 -39.34 -0.39 -5.05 16 13 C -0.13 -3.07 9.97 -40.00 -0.40 -3.47 16 14 C -0.14 -3.56 8.60 -39.27 -0.34 -3.89 16 15 C 0.10 2.59 5.55 -106.68 -0.59 2.00 16 16 C -0.45 -11.87 8.68 -37.84 -0.33 -12.20 16 17 H 0.08 2.09 7.71 -52.49 -0.40 1.69 16 18 C 0.07 1.81 5.25 -17.33 -0.09 1.72 16 19 N -0.81 -20.98 10.89 55.55 0.60 -20.37 16 20 Si 0.91 19.04 29.57 -169.99 -5.03 14.01 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 24 C 0.14 2.21 0.98 -89.81 -0.09 2.12 16 25 C -0.16 -2.55 8.12 37.35 0.30 -2.25 16 26 C -0.14 -2.13 8.54 37.88 0.32 -1.80 16 27 O -0.37 -5.31 7.17 -33.93 -0.24 -5.55 16 28 H 0.11 1.34 6.83 -52.49 -0.36 0.98 16 29 H 0.09 0.81 8.06 -52.49 -0.42 0.38 16 30 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.06 0.75 5.53 -51.93 -0.29 0.47 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.89 8.03 -51.81 -0.42 0.48 16 35 H 0.07 0.82 8.04 -51.80 -0.42 0.40 16 36 H 0.08 1.26 7.36 -51.68 -0.38 0.88 16 37 H 0.07 1.16 6.39 -52.13 -0.33 0.83 16 38 H 0.10 1.89 5.66 -52.49 -0.30 1.60 16 39 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 40 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 41 H 0.12 3.30 6.28 -52.48 -0.33 2.97 16 42 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 43 H 0.08 1.47 7.36 -51.93 -0.38 1.09 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.80 5.50 -51.93 -0.29 0.52 16 46 H 0.05 0.82 8.11 -51.92 -0.42 0.40 16 47 H 0.06 0.81 8.14 -51.94 -0.42 0.39 16 48 H 0.08 1.40 7.98 -51.93 -0.41 0.99 16 LS Contribution 370.14 15.07 5.58 5.58 Total: -1.00 -27.29 370.14 -8.94 -36.23 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -7.54 Total: 9.85 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: -2.16 Total: -33.32 kcal Atomic # 7 Polarization: -20.98 SS G_CDS: 0.60 Total: -20.37 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.38 Total: -11.97 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.29 -8.94 -36.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276533.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.532 kcal (2) G-P(sol) polarization free energy of solvation -27.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds