Wall clock time and date at job start Tue Mar 31 2020 11:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47174 * 2 1 4 4 C 1.52995 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47383 * 304.99685 * 4 3 2 6 6 C 1.52999 * 109.47638 * 64.99800 * 4 3 2 7 7 C 1.52995 * 109.47638 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47172 * 300.00162 * 7 6 4 9 9 C 1.53003 * 109.46800 * 59.99755 * 8 7 6 10 10 C 1.52998 * 109.47277 * 299.99749 * 9 8 7 11 11 H 1.09006 * 109.47152 * 179.97438 * 10 9 8 12 12 O 1.42897 * 109.47320 * 300.00210 * 10 9 8 13 13 C 1.35653 * 116.99909 * 275.34385 * 12 10 9 14 14 C 1.39165 * 119.90908 * 5.09795 * 13 12 10 15 15 C 1.37600 * 120.09531 * 179.72242 * 14 13 12 16 16 C 1.39945 * 119.90279 * 0.56550 * 15 14 13 17 17 C 1.47569 * 120.09228 * 179.68540 * 16 15 14 18 18 O 1.21829 * 120.00321 * 180.02562 * 17 16 15 19 19 C 1.41760 * 119.99886 * 0.02562 * 17 16 15 20 20 H 1.07994 * 120.00158 * 0.02562 * 19 17 16 21 21 C 1.40349 * 119.99749 * 180.02562 * 19 17 16 22 22 N 1.30534 * 120.00153 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 119.99854 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46952 * 90.00157 * 23 21 19 25 25 H 1.48503 * 109.47326 * 209.99920 * 23 21 19 26 26 H 1.48499 * 109.47208 * 330.00383 * 23 21 19 27 27 C 1.39950 * 119.81645 * 359.70743 * 16 15 14 28 28 C 1.37596 * 119.90306 * 359.97438 * 27 16 15 29 29 H 1.08999 * 109.47359 * 300.00228 * 1 2 3 30 30 H 1.09004 * 109.46639 * 59.99796 * 1 2 3 31 31 H 1.08990 * 109.47518 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47119 * 240.00244 * 2 1 3 33 33 H 1.08994 * 109.46635 * 120.00166 * 2 1 3 34 34 H 1.09002 * 109.46898 * 60.00109 * 3 2 1 35 35 H 1.08995 * 109.47062 * 299.99997 * 3 2 1 36 36 H 1.08994 * 109.47070 * 300.00667 * 6 4 3 37 37 H 1.09003 * 109.46309 * 59.99641 * 6 4 3 38 38 H 1.09003 * 109.46890 * 60.00076 * 7 6 4 39 39 H 1.08996 * 109.47323 * 180.02562 * 7 6 4 40 40 H 1.08999 * 109.47448 * 179.97438 * 8 7 6 41 41 H 1.09003 * 109.47078 * 300.00544 * 8 7 6 42 42 H 1.09003 * 109.47179 * 60.00630 * 9 8 7 43 43 H 1.09003 * 109.47051 * 180.02562 * 9 8 7 44 44 H 1.08003 * 119.94978 * 359.97438 * 14 13 12 45 45 H 1.08000 * 120.04652 * 180.29593 * 15 14 13 46 46 H 0.96999 * 119.99714 * 179.97438 * 22 21 19 47 47 H 1.08001 * 120.05130 * 180.02562 * 27 16 15 48 48 H 1.08001 * 119.95343 * 180.02562 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0807 0.8326 -1.3063 7 6 5.6106 0.8331 -1.3060 8 6 6.1201 2.2704 -1.1805 9 6 5.6095 2.8802 0.1265 10 6 4.0795 2.8797 0.1261 11 1 3.7157 3.3137 1.0575 12 8 3.6032 3.6520 -0.9779 13 6 3.5035 4.9923 -0.7944 14 6 3.9577 5.5663 0.3892 15 6 3.8637 6.9262 0.5770 16 6 3.2996 7.7308 -0.4194 17 6 3.1904 9.1888 -0.2195 18 8 2.6987 9.8876 -1.0878 19 6 3.6578 9.7763 0.9830 20 1 4.0941 9.1569 1.7526 21 6 3.5534 11.1629 1.1734 22 7 3.0256 11.9115 0.2434 23 14 4.1699 11.9371 2.7576 24 1 5.5970 12.3166 2.6005 25 1 3.3663 13.1483 3.0621 26 1 4.0366 10.9621 3.8697 27 6 2.8389 7.1488 -1.6059 28 6 2.9427 5.7889 -1.7882 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.7173 -0.1911 -1.3959 37 1 3.7176 1.4220 -2.1484 38 1 5.9739 0.2441 -0.4638 39 1 5.9743 0.3991 -2.2373 40 1 7.2101 2.2708 -1.1798 41 1 5.7567 2.8595 -2.0226 42 1 5.9729 2.2912 0.9686 43 1 5.9720 3.9043 0.2157 44 1 4.3883 4.9440 1.1598 45 1 4.2208 7.3714 1.4939 46 1 2.9532 12.8697 0.3751 47 1 2.4033 7.7662 -2.3776 48 1 2.5879 5.3390 -2.7037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522144.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:52 Heat of formation + Delta-G solvation = -93.039362 kcal Electronic energy + Delta-G solvation = -26465.022357 eV Core-core repulsion = 22869.494058 eV Total energy + Delta-G solvation = -3595.528299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.46728 -38.44515 -36.88886 -35.46395 -34.94027 -32.67886 -31.10718 -30.97274 -29.97525 -29.27362 -26.67504 -26.09755 -23.35174 -22.71028 -22.45349 -21.48054 -20.68808 -20.08276 -19.18176 -17.47553 -16.63281 -15.95983 -15.65200 -15.54739 -15.26366 -14.84665 -14.29803 -14.23118 -13.86370 -13.58011 -13.49857 -13.37149 -13.10329 -12.94981 -12.75854 -12.53405 -12.27516 -12.19470 -11.88159 -11.67265 -11.58923 -11.42644 -11.25978 -11.23092 -11.14336 -11.05142 -10.75892 -10.72110 -10.57934 -10.49698 -10.35309 -10.09241 -9.88683 -9.84247 -8.97273 -8.38273 -7.47046 -7.40299 -6.29953 -4.90161 1.89990 2.04150 3.04453 3.12065 3.15265 3.45648 4.00188 4.05703 4.36792 4.52352 4.60065 4.67013 4.83809 4.88156 4.98033 5.05617 5.11758 5.19214 5.29508 5.33166 5.42674 5.45864 5.47968 5.49212 5.62569 5.63613 5.72444 5.74479 5.82304 5.83140 5.91774 5.93538 5.98928 6.03927 6.06462 6.12657 6.15123 6.17177 6.20865 6.24232 6.30133 6.44764 6.67313 6.89469 7.08122 7.25217 7.40209 7.43490 7.91506 8.03795 8.79417 8.85371 10.31838 10.54186 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.018333 B = 0.002821 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.942132 B = 9921.522545 C =10264.976215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.116 4.116 4 C -0.078 4.078 5 H 0.082 0.918 6 C -0.113 4.113 7 C -0.118 4.118 8 C -0.115 4.115 9 C -0.146 4.146 10 C 0.092 3.908 11 H 0.071 0.929 12 O -0.304 6.304 13 C 0.117 3.883 14 C -0.224 4.224 15 C -0.056 4.056 16 C -0.139 4.139 17 C 0.390 3.610 18 O -0.544 6.544 19 C -0.518 4.518 20 H 0.073 0.927 21 C 0.079 3.921 22 N -0.736 5.736 23 Si 0.906 3.094 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.056 4.056 28 C -0.166 4.166 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.119 0.881 45 H 0.130 0.870 46 H 0.274 0.726 47 H 0.130 0.870 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 -22.881 1.470 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.154 4.154 4 C -0.097 4.097 5 H 0.100 0.900 6 C -0.150 4.150 7 C -0.156 4.156 8 C -0.153 4.153 9 C -0.184 4.184 10 C 0.035 3.965 11 H 0.089 0.911 12 O -0.219 6.219 13 C 0.072 3.928 14 C -0.242 4.242 15 C -0.075 4.075 16 C -0.140 4.140 17 C 0.286 3.714 18 O -0.434 6.434 19 C -0.549 4.549 20 H 0.091 0.909 21 C -0.144 4.144 22 N -0.364 5.364 23 Si 0.729 3.271 24 H -0.194 1.194 25 H -0.201 1.201 26 H -0.185 1.185 27 C -0.074 4.074 28 C -0.184 4.184 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.137 0.863 45 H 0.147 0.853 46 H 0.085 0.915 47 H 0.148 0.852 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.154 -22.527 0.787 22.644 hybrid contribution 0.509 0.356 1.175 1.329 sum 2.663 -22.171 1.962 22.417 Atomic orbital electron populations 1.21778 0.96004 1.01297 1.02010 1.21571 0.95778 0.97010 1.01770 1.21634 0.94191 0.96634 1.02905 1.21262 0.95823 0.93531 0.99034 0.90003 1.21577 0.95191 1.00462 0.97772 1.21535 0.95858 0.96805 1.01365 1.21426 0.99703 0.96034 0.98098 1.22111 0.95330 1.02199 0.98734 1.22353 0.93553 0.91171 0.89436 0.91085 1.85987 1.81229 1.15726 1.38926 1.19107 0.96906 0.82245 0.94557 1.21161 1.08769 0.96427 0.97883 1.21347 0.95409 0.91817 0.98897 1.21779 0.98903 0.99760 0.93577 1.18070 0.81081 0.83886 0.88394 1.90502 1.44658 1.62888 1.45361 1.20926 1.37765 0.92703 1.03531 0.90881 1.26010 0.93369 0.97625 0.97367 1.69963 1.28948 1.05921 1.31608 0.86391 0.79439 0.79086 0.82138 1.19395 1.20146 1.18533 1.21210 0.96008 0.92847 0.97364 1.20271 1.05897 0.93170 0.99093 0.92785 0.92653 0.93028 0.91858 0.92364 0.92096 0.90953 0.91979 0.90992 0.92396 0.92159 0.92280 0.91145 0.91018 0.90890 0.86284 0.85251 0.91513 0.85207 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.12 -0.99 5.69 -26.73 -0.15 -1.14 16 3 C -0.12 -1.12 4.47 -26.73 -0.12 -1.24 16 4 C -0.08 -0.73 2.02 -90.62 -0.18 -0.91 16 5 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 6 C -0.11 -1.01 4.81 -26.73 -0.13 -1.14 16 7 C -0.12 -1.02 5.92 -26.73 -0.16 -1.17 16 8 C -0.12 -1.17 5.78 -26.73 -0.15 -1.32 16 9 C -0.15 -1.54 5.26 -26.73 -0.14 -1.68 16 10 C 0.09 1.05 1.85 -26.73 -0.05 1.00 16 11 H 0.07 0.83 6.30 -51.93 -0.33 0.51 16 12 O -0.30 -4.38 7.86 -18.66 -0.15 -4.52 16 13 C 0.12 1.98 6.61 -38.89 -0.26 1.73 16 14 C -0.22 -3.84 8.20 -39.47 -0.32 -4.16 16 15 C -0.06 -1.15 9.43 -39.18 -0.37 -1.51 16 16 C -0.14 -3.30 5.89 -104.81 -0.62 -3.92 16 17 C 0.39 11.14 6.91 -34.43 -0.24 10.90 16 18 O -0.54 -17.46 14.89 5.07 0.08 -17.39 16 19 C -0.52 -14.28 8.86 -37.44 -0.33 -14.61 16 20 H 0.07 1.82 6.01 -52.49 -0.32 1.50 16 21 C 0.08 2.14 5.50 -17.31 -0.10 2.05 16 22 N -0.74 -21.29 11.73 55.57 0.65 -20.64 16 23 Si 0.91 19.26 29.56 -169.99 -5.03 14.23 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 26 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 27 C -0.06 -1.20 9.59 -39.17 -0.38 -1.58 16 28 C -0.17 -3.03 9.97 -39.47 -0.39 -3.42 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.81 7.83 -51.93 -0.41 0.41 16 36 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 37 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.87 6.89 -51.93 -0.36 0.52 16 44 H 0.12 1.71 5.41 -52.48 -0.28 1.43 16 45 H 0.13 2.53 6.19 -52.49 -0.33 2.21 16 46 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 47 H 0.13 2.85 7.65 -52.49 -0.40 2.45 16 48 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -31.76 374.58 -10.20 -41.96 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.68 Total: 3.71 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -3.72 Total: -23.00 kcal Atomic # 7 Polarization: -21.29 SS G_CDS: 0.65 Total: -20.64 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.07 Total: -21.91 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.76 -10.20 -41.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522144.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.080 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds