Wall clock time and date at job start Tue Mar 31 2020 11:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47174 * 2 1 4 4 C 1.52995 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47383 * 304.99685 * 4 3 2 6 6 C 1.52999 * 109.47638 * 64.99800 * 4 3 2 7 7 C 1.52995 * 109.47638 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47172 * 300.00162 * 7 6 4 9 9 C 1.53003 * 109.46800 * 59.99755 * 8 7 6 10 10 C 1.52998 * 109.47277 * 299.99749 * 9 8 7 11 11 H 1.09006 * 109.47152 * 179.97438 * 10 9 8 12 12 O 1.42897 * 109.47320 * 300.00210 * 10 9 8 13 13 C 1.35653 * 116.99909 * 275.34385 * 12 10 9 14 14 C 1.39165 * 119.90908 * 5.09795 * 13 12 10 15 15 C 1.37600 * 120.09531 * 179.72242 * 14 13 12 16 16 C 1.39945 * 119.90279 * 0.56550 * 15 14 13 17 17 C 1.47569 * 120.09228 * 179.68540 * 16 15 14 18 18 O 1.21829 * 120.00321 * 180.02562 * 17 16 15 19 19 C 1.41760 * 119.99886 * 0.02562 * 17 16 15 20 20 H 1.07994 * 120.00158 * 0.02562 * 19 17 16 21 21 C 1.40349 * 119.99749 * 180.02562 * 19 17 16 22 22 N 1.30534 * 120.00153 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 119.99854 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46952 * 90.00157 * 23 21 19 25 25 H 1.48503 * 109.47326 * 209.99920 * 23 21 19 26 26 H 1.48499 * 109.47208 * 330.00383 * 23 21 19 27 27 C 1.39950 * 119.81645 * 359.70743 * 16 15 14 28 28 C 1.37596 * 119.90306 * 359.97438 * 27 16 15 29 29 H 1.08999 * 109.47359 * 300.00228 * 1 2 3 30 30 H 1.09004 * 109.46639 * 59.99796 * 1 2 3 31 31 H 1.08990 * 109.47518 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47119 * 240.00244 * 2 1 3 33 33 H 1.08994 * 109.46635 * 120.00166 * 2 1 3 34 34 H 1.09002 * 109.46898 * 60.00109 * 3 2 1 35 35 H 1.08995 * 109.47062 * 299.99997 * 3 2 1 36 36 H 1.08994 * 109.47070 * 300.00667 * 6 4 3 37 37 H 1.09003 * 109.46309 * 59.99641 * 6 4 3 38 38 H 1.09003 * 109.46890 * 60.00076 * 7 6 4 39 39 H 1.08996 * 109.47323 * 180.02562 * 7 6 4 40 40 H 1.08999 * 109.47448 * 179.97438 * 8 7 6 41 41 H 1.09003 * 109.47078 * 300.00544 * 8 7 6 42 42 H 1.09003 * 109.47179 * 60.00630 * 9 8 7 43 43 H 1.09003 * 109.47051 * 180.02562 * 9 8 7 44 44 H 1.08003 * 119.94978 * 359.97438 * 14 13 12 45 45 H 1.08000 * 120.04652 * 180.29593 * 15 14 13 46 46 H 0.96999 * 119.99714 * 179.97438 * 22 21 19 47 47 H 1.08001 * 120.05130 * 180.02562 * 27 16 15 48 48 H 1.08001 * 119.95343 * 180.02562 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0807 0.8326 -1.3063 7 6 5.6106 0.8331 -1.3060 8 6 6.1201 2.2704 -1.1805 9 6 5.6095 2.8802 0.1265 10 6 4.0795 2.8797 0.1261 11 1 3.7157 3.3137 1.0575 12 8 3.6032 3.6520 -0.9779 13 6 3.5035 4.9923 -0.7944 14 6 3.9577 5.5663 0.3892 15 6 3.8637 6.9262 0.5770 16 6 3.2996 7.7308 -0.4194 17 6 3.1904 9.1888 -0.2195 18 8 2.6987 9.8876 -1.0878 19 6 3.6578 9.7763 0.9830 20 1 4.0941 9.1569 1.7526 21 6 3.5534 11.1629 1.1734 22 7 3.0256 11.9115 0.2434 23 14 4.1699 11.9371 2.7576 24 1 5.5970 12.3166 2.6005 25 1 3.3663 13.1483 3.0621 26 1 4.0366 10.9621 3.8697 27 6 2.8389 7.1488 -1.6059 28 6 2.9427 5.7889 -1.7882 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.7173 -0.1911 -1.3959 37 1 3.7176 1.4220 -2.1484 38 1 5.9739 0.2441 -0.4638 39 1 5.9743 0.3991 -2.2373 40 1 7.2101 2.2708 -1.1798 41 1 5.7567 2.8595 -2.0226 42 1 5.9729 2.2912 0.9686 43 1 5.9720 3.9043 0.2157 44 1 4.3883 4.9440 1.1598 45 1 4.2208 7.3714 1.4939 46 1 2.9532 12.8697 0.3751 47 1 2.4033 7.7662 -2.3776 48 1 2.5879 5.3390 -2.7037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233522144.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:52 Heat of formation + Delta-G solvation = -108.922174 kcal Electronic energy + Delta-G solvation = -26465.711087 eV Core-core repulsion = 22869.494058 eV Total energy + Delta-G solvation = -3596.217029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.60156 -39.86402 -38.47797 -37.01372 -35.68415 -34.78642 -32.36728 -31.83198 -31.11379 -30.86033 -28.59084 -26.91985 -24.62228 -23.85025 -23.69474 -22.55984 -21.62315 -21.41256 -20.46997 -18.72693 -18.59103 -17.43799 -16.93473 -16.70413 -16.17050 -15.97178 -15.79181 -15.39753 -15.19796 -14.74570 -14.61003 -14.51004 -14.36494 -14.25247 -14.11375 -13.83594 -13.50863 -13.24963 -13.10829 -12.99048 -12.95960 -12.76920 -12.57982 -12.42238 -12.17152 -12.05580 -11.96901 -11.93640 -11.78259 -11.62441 -11.42946 -11.29457 -11.00170 -10.83560 -10.73640 -9.93148 -9.61909 -8.97648 -8.34665 -7.07868 0.25615 0.48398 1.37467 1.38416 1.54997 2.20339 2.21024 2.28962 2.86540 3.58594 3.72595 3.75292 3.82741 3.92138 3.98489 4.11887 4.16713 4.25816 4.27854 4.35556 4.40100 4.42941 4.53499 4.56494 4.59260 4.62639 4.69564 4.76599 4.81605 4.91641 4.99601 5.03713 5.07914 5.10530 5.12357 5.20080 5.22135 5.28365 5.29698 5.36464 5.37833 5.40798 5.46372 5.49100 5.54088 5.63177 5.75752 5.86356 5.97429 6.56860 6.69371 6.80544 8.25154 8.49101 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.018333 B = 0.002821 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.942132 B = 9921.522545 C =10264.976215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.115 4.115 4 C -0.072 4.072 5 H 0.107 0.893 6 C -0.111 4.111 7 C -0.114 4.114 8 C -0.117 4.117 9 C -0.145 4.145 10 C 0.080 3.920 11 H 0.075 0.925 12 O -0.302 6.302 13 C 0.138 3.862 14 C -0.212 4.212 15 C -0.053 4.053 16 C -0.183 4.183 17 C 0.365 3.635 18 O -0.602 6.602 19 C -0.544 4.544 20 H 0.096 0.904 21 C 0.021 3.979 22 N -0.789 5.789 23 Si 0.997 3.003 24 H -0.258 1.258 25 H -0.269 1.269 26 H -0.244 1.244 27 C -0.066 4.066 28 C -0.166 4.166 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.044 0.956 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.156 0.844 45 H 0.136 0.864 46 H 0.282 0.718 47 H 0.110 0.890 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.104 -26.210 4.129 26.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.153 4.153 4 C -0.091 4.091 5 H 0.125 0.875 6 C -0.148 4.148 7 C -0.151 4.151 8 C -0.154 4.154 9 C -0.182 4.182 10 C 0.024 3.976 11 H 0.093 0.907 12 O -0.216 6.216 13 C 0.092 3.908 14 C -0.230 4.230 15 C -0.071 4.071 16 C -0.184 4.184 17 C 0.265 3.735 18 O -0.497 6.497 19 C -0.574 4.574 20 H 0.114 0.886 21 C -0.198 4.198 22 N -0.418 5.418 23 Si 0.815 3.185 24 H -0.182 1.182 25 H -0.193 1.193 26 H -0.167 1.167 27 C -0.085 4.085 28 C -0.185 4.185 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.117 0.883 43 H 0.076 0.924 44 H 0.173 0.827 45 H 0.153 0.847 46 H 0.092 0.908 47 H 0.128 0.872 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.762 -25.901 3.449 26.399 hybrid contribution 0.011 1.182 0.284 1.216 sum 3.773 -24.719 3.734 25.282 Atomic orbital electron populations 1.21798 0.96238 1.01863 1.01420 1.21540 0.95577 0.95872 1.02651 1.21609 0.94570 0.97582 1.01532 1.21300 0.95415 0.92178 1.00160 0.87521 1.21561 0.95613 1.00966 0.96679 1.21521 0.95308 0.95826 1.02487 1.21433 1.00286 0.96780 0.96936 1.22129 0.94264 1.01916 0.99932 1.22760 0.94504 0.91928 0.88380 0.90737 1.86036 1.80754 1.14173 1.40622 1.19137 0.94475 0.83496 0.93656 1.21406 1.07662 0.95295 0.98650 1.21368 0.94809 0.92872 0.98097 1.21421 1.03141 0.97751 0.96098 1.18818 0.80147 0.86216 0.88315 1.90438 1.47317 1.64926 1.46994 1.21449 1.38015 0.94001 1.03929 0.88630 1.27332 0.92749 0.97935 1.01764 1.70119 1.30295 1.06749 1.34679 0.85034 0.78951 0.78128 0.76402 1.18223 1.19346 1.16669 1.21093 0.96660 0.94214 0.96530 1.20373 1.05768 0.91894 1.00441 0.93124 0.93557 0.91899 0.91308 0.91022 0.92666 0.93162 0.90323 0.93212 0.90546 0.91651 0.91410 0.93696 0.88345 0.92372 0.82693 0.84662 0.90770 0.87204 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.91 71.98 0.71 -1.47 16 2 C -0.12 -1.56 5.69 30.60 0.17 -1.39 16 3 C -0.12 -1.95 4.47 30.59 0.14 -1.82 16 4 C -0.07 -1.10 2.02 -10.79 -0.02 -1.12 16 5 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 6 C -0.11 -1.66 4.81 30.59 0.15 -1.51 16 7 C -0.11 -1.56 5.92 30.59 0.18 -1.38 16 8 C -0.12 -2.06 5.78 30.60 0.18 -1.89 16 9 C -0.14 -2.56 5.26 30.59 0.16 -2.40 16 10 C 0.08 1.58 1.85 30.59 0.06 1.64 16 11 H 0.07 1.46 6.30 -2.38 -0.02 1.45 16 12 O -0.30 -8.12 7.86 -89.69 -0.70 -8.82 16 13 C 0.14 4.53 6.61 22.72 0.15 4.68 16 14 C -0.21 -6.89 8.20 22.34 0.18 -6.71 16 15 C -0.05 -2.16 9.43 22.53 0.21 -1.94 16 16 C -0.18 -9.10 5.89 -19.99 -0.12 -9.22 16 17 C 0.36 22.13 6.91 25.60 0.18 22.31 16 18 O -0.60 -41.63 14.89 -4.76 -0.07 -41.70 16 19 C -0.54 -30.91 8.86 23.65 0.21 -30.70 16 20 H 0.10 4.78 6.01 -2.91 -0.02 4.77 16 21 C 0.02 1.15 5.50 85.40 0.47 1.62 16 22 N -0.79 -47.74 11.73 21.89 0.26 -47.49 16 23 Si 1.00 39.53 29.56 68.60 2.03 41.55 16 24 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 25 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 26 H -0.24 -8.89 7.11 99.48 0.71 -8.18 16 27 C -0.07 -3.02 9.59 22.53 0.22 -2.81 16 28 C -0.17 -6.12 9.97 22.34 0.22 -5.90 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.84 6.57 -2.39 -0.02 0.82 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 1.07 7.83 -2.39 -0.02 1.05 16 36 H 0.08 0.94 6.56 -2.39 -0.02 0.93 16 37 H 0.05 0.98 7.68 -2.39 -0.02 0.96 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.04 1.02 7.68 -2.39 -0.02 1.00 16 42 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 43 H 0.06 1.22 6.89 -2.39 -0.02 1.20 16 44 H 0.16 3.91 5.41 -2.91 -0.02 3.89 16 45 H 0.14 5.20 6.19 -2.91 -0.02 5.19 16 46 H 0.28 15.18 8.29 -92.71 -0.77 14.41 16 47 H 0.11 5.30 7.65 -2.91 -0.02 5.27 16 48 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -74.73 374.58 5.90 -68.83 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.94 Total: 27.65 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 3.45 Total: -40.02 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.26 Total: -47.49 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -0.78 Total: -50.53 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.55 kcal Total: -74.73 5.90 -68.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522144.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.094 kcal (2) G-P(sol) polarization free energy of solvation -74.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds