Wall clock time and date at job start Tue Mar 31 2020 12:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52701 * 1 3 3 H 1.11084 * 106.76363 * 2 1 4 4 C 1.52353 * 110.78086 * 116.11308 * 2 1 3 5 5 C 1.52891 * 110.30020 * 72.90632 * 4 2 1 6 6 H 1.08592 * 110.46289 * 300.46180 * 5 4 2 7 7 O 1.43270 * 109.03797 * 180.86769 * 5 4 2 8 8 C 1.35663 * 116.99817 * 85.88807 * 7 5 4 9 9 C 1.39163 * 119.90612 * 174.24309 * 8 7 5 10 10 C 1.37594 * 120.09199 * 179.76323 * 9 8 7 11 11 C 1.39952 * 119.90560 * 0.48499 * 10 9 8 12 12 C 1.47572 * 120.09164 * 179.79097 * 11 10 9 13 13 O 1.21818 * 119.99608 * 179.97438 * 12 11 10 14 14 C 1.41761 * 119.99884 * 359.97438 * 12 11 10 15 15 H 1.07997 * 120.00264 * 359.97438 * 14 12 11 16 16 C 1.40348 * 119.99599 * 180.02562 * 14 12 11 17 17 N 1.30531 * 119.99996 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99815 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47311 * 89.99747 * 18 16 14 20 20 H 1.48500 * 109.46820 * 209.99782 * 18 16 14 21 21 H 1.48499 * 109.46999 * 329.99408 * 18 16 14 22 22 C 1.39950 * 119.81334 * 359.76571 * 11 10 9 23 23 C 1.37590 * 119.90419 * 0.02562 * 22 11 10 24 24 C 1.52691 * 108.71731 * 61.97639 * 5 4 2 25 25 C 1.52461 * 110.94442 * 298.52983 * 24 5 4 26 26 C 1.54443 * 107.67563 * 170.82528 * 25 24 5 27 27 C 1.53137 * 109.98447 * 287.52889 * 25 24 5 28 28 C 1.51640 * 111.89896 * 242.75323 * 2 1 3 29 29 H 1.09001 * 109.47810 * 303.88311 * 1 2 3 30 30 H 1.08998 * 109.47290 * 63.88481 * 1 2 3 31 31 H 1.09005 * 109.47017 * 183.88174 * 1 2 3 32 32 H 1.09240 * 109.59090 * 312.62165 * 4 2 1 33 33 H 1.09209 * 109.62948 * 193.27812 * 4 2 1 34 34 H 1.08003 * 119.95104 * 359.97438 * 9 8 7 35 35 H 1.08004 * 120.04605 * 180.27566 * 10 9 8 36 36 H 0.97006 * 119.99479 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.04491 * 180.02562 * 22 11 10 38 38 H 1.07996 * 119.95478 * 180.02562 * 23 22 11 39 39 H 1.09326 * 109.25104 * 59.21205 * 24 5 4 40 40 H 1.09317 * 109.25440 * 177.80609 * 24 5 4 41 41 H 1.09001 * 109.47262 * 59.99654 * 26 25 24 42 42 H 1.08999 * 109.46917 * 179.97438 * 26 25 24 43 43 H 1.09006 * 109.46883 * 300.00096 * 26 25 24 44 44 H 1.08990 * 109.47173 * 60.00357 * 27 25 24 45 45 H 1.09006 * 109.46518 * 180.02562 * 27 25 24 46 46 H 1.09003 * 109.47341 * 299.99739 * 27 25 24 47 47 H 1.10188 * 108.75412 * 41.30223 * 28 2 1 48 48 H 1.10215 * 108.72405 * 156.45657 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5270 0.0000 0.0000 3 1 1.8474 1.0636 0.0000 4 6 2.0676 -0.6269 1.2790 5 6 1.8617 -2.1417 1.2553 6 1 0.8061 -2.3801 1.1653 7 8 2.3602 -2.7003 2.4769 8 6 1.5120 -2.7216 3.5355 9 6 1.8897 -3.3573 4.7145 10 6 1.0345 -3.3771 5.7922 11 6 -0.2208 -2.7655 5.6981 12 6 -1.1431 -2.7882 6.8498 13 8 -2.2351 -2.2549 6.7662 14 6 -0.7582 -3.4306 8.0535 15 1 0.2098 -3.9038 8.1275 16 6 -1.6356 -3.4527 9.1487 17 7 -2.8058 -2.8812 9.0590 18 14 -1.1283 -4.2986 10.7350 19 1 -0.4441 -3.3218 11.6199 20 1 -2.3341 -4.8281 11.4211 21 1 -0.2034 -5.4182 10.4250 22 6 -0.5987 -2.1318 4.5088 23 6 0.2643 -2.1130 3.4374 24 6 2.6457 -2.7245 0.0818 25 6 2.1425 -2.1618 -1.2428 26 6 3.1244 -2.6118 -2.3467 27 6 0.7726 -2.7585 -1.5783 28 6 2.0926 -0.6441 -1.2509 29 1 -0.3635 0.5729 0.8531 30 1 -0.3634 0.4523 -0.9227 31 1 -0.3633 -1.0254 0.0696 32 1 1.5459 -0.2065 2.1419 33 1 3.1337 -0.4094 1.3721 34 1 2.8569 -3.8329 4.7847 35 1 1.3302 -3.8668 6.7082 36 1 -3.4120 -2.8962 9.8162 37 1 -1.5663 -1.6584 4.4323 38 1 -0.0263 -1.6239 2.5194 39 1 3.7051 -2.4821 0.2002 40 1 2.5362 -3.8122 0.0798 41 1 3.1547 -3.7008 -2.3842 42 1 2.7910 -2.2246 -3.3095 43 1 4.1204 -2.2281 -2.1255 44 1 0.0638 -2.5072 -0.7895 45 1 0.4213 -2.3512 -2.5264 46 1 0.8581 -3.8423 -1.6583 47 1 1.4974 -0.3162 -2.1183 48 1 3.1124 -0.2604 -1.4163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:47 Heat of formation + Delta-G solvation = -87.218835 kcal Electronic energy + Delta-G solvation = -26636.645172 eV Core-core repulsion = 23041.369270 eV Total energy + Delta-G solvation = -3595.275902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.55421 -38.88558 -37.29274 -35.60944 -34.30862 -32.68297 -31.30642 -30.44727 -29.11394 -27.87283 -26.86731 -26.67263 -26.34811 -23.46268 -22.45642 -21.22147 -20.67586 -19.57074 -18.36742 -17.64174 -16.74471 -15.94006 -15.48449 -15.28460 -14.91582 -14.61542 -14.45982 -14.40339 -14.12467 -13.55203 -13.50392 -13.49511 -13.08914 -12.86684 -12.60045 -12.43561 -12.34103 -12.20541 -11.97380 -11.90315 -11.73006 -11.49355 -11.28386 -11.21097 -11.16038 -11.04296 -10.96227 -10.78661 -10.56349 -10.45682 -10.34315 -10.28924 -9.91360 -9.83438 -8.96574 -8.38280 -7.46789 -7.41054 -6.29489 -4.89504 1.89578 2.04358 3.05679 3.13317 3.16728 3.35912 4.01276 4.05863 4.30455 4.38421 4.53319 4.66776 4.76638 4.82723 4.91605 4.95832 5.09598 5.11824 5.25686 5.38435 5.39359 5.40652 5.47713 5.48798 5.54895 5.61120 5.68906 5.70999 5.77130 5.80512 5.82824 5.83494 5.84069 5.94992 6.01506 6.10113 6.11488 6.14298 6.17214 6.23135 6.27140 6.38889 6.68149 6.90556 7.07726 7.25929 7.39613 7.42925 7.90635 8.04851 8.80126 8.85833 10.32268 10.54549 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.028551 B = 0.002666 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.476850 B =10501.913942 C =10983.538569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.082 4.082 3 H 0.065 0.935 4 C -0.138 4.138 5 C 0.090 3.910 6 H 0.077 0.923 7 O -0.317 6.317 8 C 0.115 3.885 9 C -0.167 4.167 10 C -0.057 4.057 11 C -0.138 4.138 12 C 0.389 3.611 13 O -0.545 6.545 14 C -0.518 4.518 15 H 0.074 0.926 16 C 0.079 3.921 17 N -0.736 5.736 18 Si 0.906 3.094 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.056 4.056 23 C -0.221 4.221 24 C -0.102 4.102 25 C -0.053 4.053 26 C -0.144 4.144 27 C -0.148 4.148 28 C -0.101 4.101 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.121 0.879 35 H 0.135 0.865 36 H 0.274 0.726 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.772 1.976 -19.750 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.176 4.176 5 C 0.034 3.966 6 H 0.095 0.905 7 O -0.232 6.232 8 C 0.071 3.929 9 C -0.186 4.186 10 C -0.075 4.075 11 C -0.140 4.140 12 C 0.286 3.714 13 O -0.435 6.435 14 C -0.549 4.549 15 H 0.092 0.908 16 C -0.144 4.144 17 N -0.365 5.365 18 Si 0.730 3.270 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.185 1.185 22 C -0.074 4.074 23 C -0.240 4.240 24 C -0.140 4.140 25 C -0.053 4.053 26 C -0.202 4.202 27 C -0.205 4.205 28 C -0.138 4.138 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.139 0.861 35 H 0.153 0.847 36 H 0.085 0.915 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.295 2.239 -19.794 22.423 hybrid contribution 0.241 -0.307 0.694 0.796 sum 10.536 1.932 -19.100 21.898 Atomic orbital electron populations 1.21966 0.94972 1.02274 1.01896 1.20760 0.95861 0.99612 0.93851 0.91642 1.22016 1.02347 0.95155 0.98095 1.22246 0.98762 0.92830 0.82798 0.90549 1.86050 1.40251 1.78151 1.18737 1.19116 0.89375 0.96782 0.87667 1.20352 1.01378 1.04873 0.91980 1.21386 0.92619 0.96240 0.97258 1.21795 0.96476 0.98136 0.97545 1.18070 0.85782 0.82053 0.85530 1.90496 1.23093 1.45848 1.84041 1.20939 1.02557 1.33443 0.97932 0.90774 1.26013 0.94134 0.93999 1.00228 1.69966 1.05945 1.30216 1.30355 0.86384 0.79120 0.80224 0.81302 1.19383 1.20176 1.18474 1.21179 0.98664 0.95945 0.91656 1.21134 0.95120 1.07237 1.00488 1.21492 1.00180 1.00660 0.91653 1.20328 0.95889 0.94840 0.94257 1.22275 0.98689 1.01290 0.97917 1.22093 0.96211 1.00648 1.01553 1.21331 1.01324 0.93790 0.97358 0.92300 0.92554 0.92265 0.90853 0.91073 0.86117 0.84709 0.91529 0.85640 0.86213 0.91030 0.91112 0.92518 0.92608 0.92655 0.92100 0.92542 0.92519 0.91926 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.89 37.00 0.33 -1.06 16 2 C -0.08 -0.73 2.60 -91.79 -0.24 -0.97 16 3 H 0.07 0.55 8.29 -50.73 -0.42 0.13 16 4 C -0.14 -1.54 4.60 -27.12 -0.12 -1.67 16 5 C 0.09 1.09 1.91 -26.95 -0.05 1.04 16 6 H 0.08 0.96 4.22 -52.16 -0.22 0.74 16 7 O -0.32 -4.92 9.77 -18.69 -0.18 -5.11 16 8 C 0.12 2.04 6.62 -38.89 -0.26 1.78 16 9 C -0.17 -3.04 9.97 -39.47 -0.39 -3.43 16 10 C -0.06 -1.17 9.43 -39.17 -0.37 -1.54 16 11 C -0.14 -3.30 5.89 -104.81 -0.62 -3.92 16 12 C 0.39 11.14 6.91 -34.43 -0.24 10.91 16 13 O -0.54 -17.47 14.89 5.08 0.08 -17.40 16 14 C -0.52 -14.28 8.86 -37.44 -0.33 -14.61 16 15 H 0.07 1.85 6.01 -52.49 -0.32 1.53 16 16 C 0.08 2.15 5.50 -17.31 -0.10 2.05 16 17 N -0.74 -21.30 11.73 55.57 0.65 -20.65 16 18 Si 0.91 19.30 29.56 -169.99 -5.03 14.27 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 C -0.06 -1.21 9.59 -39.18 -0.38 -1.58 16 23 C -0.22 -3.98 8.22 -39.47 -0.32 -4.30 16 24 C -0.10 -1.02 4.14 -27.17 -0.11 -1.13 16 25 C -0.05 -0.43 0.71 -154.54 -0.11 -0.54 16 26 C -0.14 -0.99 8.07 37.91 0.31 -0.69 16 27 C -0.15 -1.19 8.01 37.23 0.30 -0.89 16 28 C -0.10 -0.78 4.13 -28.00 -0.12 -0.90 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.06 0.56 4.83 -51.93 -0.25 0.31 16 32 H 0.07 0.93 6.96 -51.79 -0.36 0.57 16 33 H 0.07 0.79 8.16 -51.81 -0.42 0.36 16 34 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 35 H 0.14 2.64 6.19 -52.48 -0.33 2.32 16 36 H 0.27 7.08 8.29 -40.82 -0.34 6.75 16 37 H 0.13 2.76 7.65 -52.49 -0.40 2.36 16 38 H 0.12 1.84 5.47 -52.49 -0.29 1.55 16 39 H 0.07 0.71 8.10 -51.74 -0.42 0.29 16 40 H 0.07 0.72 8.12 -51.75 -0.42 0.30 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 0.37 8.08 -51.93 -0.42 -0.05 16 44 H 0.06 0.54 4.77 -51.93 -0.25 0.29 16 45 H 0.06 0.40 8.07 -51.93 -0.42 -0.02 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.44 7.90 -51.25 -0.40 0.04 16 48 H 0.06 0.44 7.94 -51.24 -0.41 0.03 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -32.10 369.07 -9.15 -41.25 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.41 Total: 3.53 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -2.82 Total: -21.46 kcal Atomic # 7 Polarization: -21.30 SS G_CDS: 0.65 Total: -20.65 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.11 Total: -22.50 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.10 -9.15 -41.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.971 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds