Wall clock time and date at job start Tue Mar 31 2020 11:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47198 * 2 1 4 4 C 1.53003 * 109.47109 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47048 * 180.02562 * 4 3 2 6 6 C 1.49418 * 110.88043 * 289.86039 * 5 4 3 7 7 C 1.54330 * 104.64406 * 207.70576 * 6 5 4 8 8 F 1.39896 * 112.95595 * 152.49030 * 7 6 5 9 9 C 1.51364 * 108.23971 * 278.31678 * 7 6 5 10 10 O 1.21281 * 124.66468 * 302.62207 * 9 7 6 11 11 N 1.34145 * 110.67746 * 122.58986 * 9 7 6 12 12 C 1.46496 * 124.27191 * 182.31227 * 11 9 7 13 13 C 1.52998 * 109.47238 * 90.02377 * 12 11 9 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99302 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00436 * 179.72505 * 14 13 12 17 17 N 1.31514 * 120.00481 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99745 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47209 * 90.00365 * 18 16 14 20 20 H 1.48506 * 109.47294 * 210.00213 * 18 16 14 21 21 H 1.48501 * 109.47275 * 330.00116 * 18 16 14 22 22 C 1.46595 * 111.45071 * 2.57188 * 11 9 7 23 23 C 1.53990 * 105.97289 * 344.06240 * 22 11 9 24 24 F 1.39895 * 112.53030 * 142.77633 * 23 22 11 25 25 C 1.47296 * 111.00124 * 170.00540 * 5 4 3 26 26 H 1.08995 * 109.47283 * 300.00430 * 1 2 3 27 27 H 1.09004 * 109.46642 * 60.00047 * 1 2 3 28 28 H 1.08997 * 109.47130 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47462 * 240.00044 * 2 1 3 30 30 H 1.09005 * 109.47378 * 119.99847 * 2 1 3 31 31 H 1.08998 * 109.46933 * 60.00239 * 3 2 1 32 32 H 1.08998 * 109.47006 * 299.99850 * 3 2 1 33 33 H 1.08998 * 109.46900 * 60.00376 * 4 3 2 34 34 H 1.08998 * 109.47192 * 299.99893 * 4 3 2 35 35 H 1.09002 * 110.99040 * 88.81535 * 6 5 4 36 36 H 1.09000 * 110.34527 * 326.27092 * 6 5 4 37 37 H 1.09000 * 109.47435 * 330.02281 * 12 11 9 38 38 H 1.09002 * 109.46784 * 210.01917 * 12 11 9 39 39 H 1.09001 * 109.47671 * 59.99927 * 13 12 11 40 40 H 1.08998 * 109.47454 * 299.99925 * 13 12 11 41 41 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 42 42 H 1.09000 * 110.13380 * 103.34838 * 22 11 9 43 43 H 1.09006 * 110.13577 * 225.04705 * 22 11 9 44 44 H 1.09001 * 109.80552 * 21.76169 * 25 5 4 45 45 H 1.09001 * 109.80449 * 260.88550 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8275 0.0013 6 6 3.7906 3.4881 -1.3117 7 6 4.8985 4.5540 -1.4464 8 9 5.2127 4.8491 -2.7773 9 6 4.4807 5.7743 -0.6542 10 8 3.4529 6.3932 -0.8316 11 7 5.4033 6.0766 0.2715 12 6 5.2770 7.1733 1.2346 13 6 4.5905 6.6618 2.5027 14 6 4.4611 7.7898 3.4937 15 1 4.8319 8.7729 3.2441 16 6 3.8649 7.5678 4.7169 17 7 3.7515 8.5523 5.5815 18 14 3.2168 5.8691 5.1454 19 1 4.2896 5.0817 5.8046 20 1 2.0600 5.9987 6.0677 21 1 2.7853 5.1763 3.9048 22 6 6.5565 5.1750 0.1936 23 6 6.0979 3.9725 -0.6519 24 9 7.1087 3.4896 -1.4899 25 6 5.5123 2.8737 0.2405 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9286 -0.8891 34 1 3.9330 0.9288 0.8908 35 1 2.8090 3.9619 -1.3165 36 1 3.8640 2.7634 -2.1226 37 1 4.6814 7.9744 0.7970 38 1 6.2677 7.5524 1.4855 39 1 5.1860 5.8606 2.9404 40 1 3.5999 6.2826 2.2519 41 1 3.3317 8.3962 6.4419 42 1 7.3945 5.6784 -0.2885 43 1 6.8415 4.8432 1.1920 44 1 5.9595 1.9130 -0.0149 45 1 5.7069 3.1057 1.2877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272467163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:28 Heat of formation + Delta-G solvation = -122.556470 kcal Electronic energy + Delta-G solvation = -28238.809210 eV Core-core repulsion = 24120.064174 eV Total energy + Delta-G solvation = -4118.745035 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.64141 -47.58698 -40.69516 -38.26038 -36.37258 -35.24795 -33.52892 -32.02087 -30.27225 -29.91728 -28.26796 -26.02115 -25.49835 -23.68977 -22.01586 -21.41795 -21.31256 -20.75809 -19.65767 -17.63852 -17.12910 -16.73888 -16.28309 -16.21301 -15.85269 -15.35613 -15.26973 -14.92735 -14.62161 -14.43860 -14.08741 -14.03862 -13.99877 -13.94743 -13.47404 -13.13798 -13.10677 -12.90796 -12.66713 -12.61339 -12.38681 -12.19038 -11.73139 -11.67735 -11.47396 -11.26322 -11.07814 -11.02725 -10.89265 -10.74375 -10.55216 -10.11227 -9.92928 -9.58143 -9.29447 -8.81447 -8.59198 -8.46573 -6.09698 -4.09614 2.47498 2.86288 3.22928 3.27643 3.34445 3.36810 3.44051 3.53922 3.60750 3.99982 4.19373 4.41538 4.42041 4.60110 4.71931 4.86514 4.89636 4.97542 5.09945 5.16826 5.24349 5.26061 5.30245 5.34938 5.40978 5.47397 5.55068 5.58473 5.61514 5.70010 5.74831 5.90408 6.01577 6.13248 6.18124 6.37256 6.44779 6.52335 6.56911 6.97609 7.22838 7.38677 7.68730 8.14729 8.43344 8.92620 9.51792 11.03147 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.009596 B = 0.005347 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.069303 B = 5235.301809 C = 7134.229988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.051 3.949 5 N -0.511 5.511 6 C 0.035 3.965 7 C 0.061 3.939 8 F -0.161 7.161 9 C 0.519 3.481 10 O -0.498 6.498 11 N -0.595 5.595 12 C 0.137 3.863 13 C -0.023 4.023 14 C -0.524 4.524 15 H 0.074 0.926 16 C 0.072 3.928 17 N -0.900 5.900 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.261 1.261 22 C 0.091 3.909 23 C 0.079 3.921 24 F -0.172 7.172 25 C 0.030 3.970 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.014 0.986 40 H 0.025 0.975 41 H 0.264 0.736 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.074 0.926 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.942 -17.983 -13.250 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.077 4.077 5 N -0.236 5.236 6 C -0.093 4.093 7 C 0.037 3.963 8 F -0.141 7.141 9 C 0.302 3.698 10 O -0.372 6.372 11 N -0.328 5.328 12 C 0.018 3.982 13 C -0.061 4.061 14 C -0.562 4.562 15 H 0.092 0.908 16 C -0.130 4.130 17 N -0.538 5.538 18 Si 0.704 3.296 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.185 1.185 22 C -0.033 4.033 23 C 0.059 3.941 24 F -0.152 7.152 25 C -0.098 4.098 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.132 0.868 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.032 0.968 40 H 0.043 0.957 41 H 0.074 0.926 42 H 0.108 0.892 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.087 -17.260 -12.736 21.552 hybrid contribution 0.333 -1.315 -0.466 1.435 sum 2.420 -18.576 -13.203 22.918 Atomic orbital electron populations 1.21759 0.95613 1.01483 1.02154 1.21477 0.96181 0.96498 1.01838 1.21624 0.93768 0.96862 1.03479 1.22399 0.96529 0.87371 1.01371 1.64316 1.12260 1.17763 1.29234 1.23681 0.99115 0.94863 0.91671 1.22609 0.96355 0.97872 0.79431 1.92925 1.93547 1.94437 1.33153 1.20040 0.84271 0.84312 0.81204 1.90756 1.24192 1.53735 1.68517 1.48281 1.17999 1.32427 1.34110 1.21782 1.01905 0.86162 0.88368 1.19892 0.96280 0.97492 0.92435 1.20927 1.39776 0.96609 0.98903 0.90765 1.24952 0.95107 0.96820 0.96119 1.69899 1.44225 1.31753 1.07923 0.86808 0.78881 0.85086 0.78826 1.20340 1.21333 1.18540 1.22445 0.90312 0.88841 1.01738 1.22452 0.85992 0.95640 0.90024 1.92923 1.60986 1.89016 1.72276 1.23204 0.88443 0.97075 1.01063 0.92465 0.92711 0.92854 0.92260 0.91922 0.90503 0.91771 0.94132 0.89963 0.86758 0.91025 0.89817 0.90309 0.96784 0.95685 0.92601 0.89160 0.87682 0.90756 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.15 0.37 -0.82 16 2 C -0.12 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.12 -1.14 5.27 -26.73 -0.14 -1.28 16 4 C 0.05 0.48 4.64 -3.82 -0.02 0.46 16 5 N -0.51 -6.21 5.16 -231.11 -1.19 -7.40 16 6 C 0.03 0.44 5.14 -1.72 -0.01 0.43 16 7 C 0.06 0.88 1.84 -89.60 -0.16 0.72 16 8 F -0.16 -2.45 16.90 2.25 0.04 -2.41 16 9 C 0.52 9.34 7.03 -10.94 -0.08 9.26 16 10 O -0.50 -10.73 17.21 5.56 0.10 -10.63 16 11 N -0.60 -9.99 2.92 -172.90 -0.50 -10.49 16 12 C 0.14 2.64 5.86 -4.04 -0.02 2.62 16 13 C -0.02 -0.53 4.37 -27.88 -0.12 -0.65 16 14 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 15 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 18 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 22 C 0.09 1.15 6.68 -3.47 -0.02 1.12 16 23 C 0.08 0.97 1.85 -88.85 -0.16 0.81 16 24 F -0.17 -2.11 16.80 2.25 0.04 -2.07 16 25 C 0.03 0.33 6.26 -3.51 -0.02 0.31 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.63 7.46 -51.93 -0.39 0.24 16 33 H 0.04 0.34 7.84 -51.93 -0.41 -0.07 16 34 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 35 H 0.11 1.58 7.62 -51.93 -0.40 1.18 16 36 H 0.07 0.77 7.71 -51.93 -0.40 0.37 16 37 H 0.08 1.74 7.89 -51.93 -0.41 1.33 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.01 0.31 7.58 -51.93 -0.39 -0.08 16 40 H 0.02 0.63 7.18 -51.93 -0.37 0.26 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.11 1.16 7.45 -51.93 -0.39 0.77 16 44 H 0.07 0.66 7.63 -51.93 -0.40 0.26 16 45 H 0.11 1.19 7.31 -51.93 -0.38 0.81 16 LS Contribution 366.25 15.07 5.52 5.52 Total: -1.00 -32.51 366.25 -8.21 -40.71 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -7.32 Total: -2.46 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -0.98 Total: -1.02 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.92 Total: -44.48 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.10 Total: -10.63 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.08 Total: -4.48 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.51 -8.21 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272467163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.843 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds