Wall clock time and date at job start Tue Mar 31 2020 11:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99773 * 2 1 4 4 H 1.48501 * 109.47097 * 239.99789 * 3 2 1 5 5 H 1.48497 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46968 * 119.99937 * 3 2 1 7 7 C 1.37877 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99206 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47171 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47296 * 179.97438 * 10 9 7 12 12 C 1.34779 * 120.00338 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99547 * 359.97438 * 12 11 10 14 14 C 1.50694 * 120.00213 * 180.02562 * 12 11 10 15 15 H 1.09002 * 115.57348 * 59.17752 * 14 12 11 16 16 C 1.53045 * 117.50581 * 204.90237 * 14 12 11 17 17 C 1.52730 * 59.94587 * 107.46712 * 16 14 12 18 18 C 1.53217 * 117.83080 * 252.25758 * 17 16 14 19 19 C 1.53263 * 108.62469 * 163.04460 * 18 17 16 20 20 N 1.46803 * 109.42829 * 55.56935 * 19 18 17 21 21 C 1.46903 * 111.00174 * 170.76896 * 20 19 18 22 22 C 1.53007 * 109.46971 * 75.99734 * 21 20 19 23 23 F 1.39900 * 109.47239 * 305.99422 * 22 21 20 24 24 F 1.39902 * 109.46961 * 65.99574 * 22 21 20 25 25 C 1.46810 * 111.59832 * 295.15708 * 20 19 18 26 26 C 1.53224 * 117.82427 * 107.74347 * 17 16 14 27 27 H 0.97003 * 120.00050 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47295 * 59.99839 * 9 7 2 29 29 H 1.09008 * 109.47069 * 299.99860 * 9 7 2 30 30 H 1.09000 * 109.47326 * 59.99634 * 10 9 7 31 31 H 1.09008 * 109.46827 * 299.99784 * 10 9 7 32 32 H 0.97007 * 120.00085 * 359.97438 * 11 10 9 33 33 H 1.09008 * 117.50739 * 359.97438 * 16 14 12 34 34 H 1.09006 * 117.53263 * 214.93260 * 16 14 12 35 35 H 1.09005 * 109.61004 * 43.30449 * 18 17 16 36 36 H 1.09000 * 109.60886 * 282.79202 * 18 17 16 37 37 H 1.08998 * 109.47941 * 295.58003 * 19 18 17 38 38 H 1.08998 * 109.47463 * 175.55354 * 19 18 17 39 39 H 1.08996 * 109.47773 * 195.99830 * 21 20 19 40 40 H 1.09001 * 109.46736 * 316.00077 * 21 20 19 41 41 H 1.08996 * 109.46667 * 185.99250 * 22 21 20 42 42 H 1.08998 * 109.48299 * 184.84166 * 25 20 19 43 43 H 1.09011 * 109.47621 * 304.85865 * 25 20 19 44 44 H 1.09005 * 109.60647 * 77.22019 * 26 17 16 45 45 H 1.08997 * 109.61586 * 316.70061 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5128 -4.9307 0.0024 12 6 2.1866 -6.0980 0.0031 13 8 3.3995 -6.0980 0.0027 14 6 1.4332 -7.4030 0.0031 15 1 0.7620 -7.5589 -0.8415 16 6 2.1458 -8.6306 0.5754 17 6 1.0094 -7.9730 1.3556 18 6 1.3725 -7.1753 2.6123 19 6 0.1876 -6.2755 2.9804 20 7 -1.0192 -7.0968 3.1361 21 6 -2.1234 -6.3085 3.6995 22 6 -2.7071 -5.4006 2.6150 23 9 -1.6835 -4.6339 2.0479 24 9 -3.3065 -6.1847 1.6234 25 6 -1.4136 -7.7236 1.8685 26 6 -0.3295 -8.7143 1.4305 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8904 30 1 2.8713 -3.6039 0.8922 31 1 2.8726 -3.6047 -0.8878 32 1 0.5427 -4.9308 0.0024 33 1 3.1598 -8.4944 0.9514 34 1 1.9436 -9.5942 0.1076 35 1 2.2509 -6.5608 2.4145 36 1 1.5802 -7.8611 3.4337 37 1 0.0287 -5.5422 2.1898 38 1 0.3999 -5.7601 3.9170 39 1 -2.8990 -6.9803 4.0671 40 1 -1.7512 -5.6983 4.5225 41 1 -3.4534 -4.7405 3.0568 42 1 -2.3569 -8.2530 2.0028 43 1 -1.5336 -6.9551 1.1048 44 1 -0.2590 -9.5242 2.1567 45 1 -0.5787 -9.1196 0.4499 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273844488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:02 Heat of formation + Delta-G solvation = -119.273014 kcal Electronic energy + Delta-G solvation = -28418.644609 eV Core-core repulsion = 24300.041955 eV Total energy + Delta-G solvation = -4118.602654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.16821 -47.04936 -40.32720 -38.42194 -36.33722 -34.74563 -32.78307 -31.48539 -31.10570 -29.65059 -27.73870 -25.39346 -23.67377 -23.38969 -22.94667 -21.53019 -20.86211 -20.07982 -18.70781 -17.71627 -17.45178 -16.88905 -16.48369 -16.27454 -15.69598 -15.11136 -15.00401 -14.72430 -14.53726 -14.45865 -14.28177 -13.75519 -13.50708 -13.41340 -13.16463 -12.87616 -12.73689 -12.49555 -12.29624 -12.14931 -12.14034 -11.90712 -11.62054 -11.40219 -11.18653 -11.06781 -11.00210 -10.65637 -10.55488 -10.29282 -10.09038 -9.90210 -9.65969 -9.39946 -9.12353 -8.50929 -8.37809 -8.27413 -6.06859 -4.09733 2.93541 3.31716 3.35366 3.38389 3.48263 3.58906 3.77613 3.88023 4.19201 4.34248 4.42811 4.55129 4.59431 4.67969 4.76366 4.87582 5.10198 5.19040 5.29775 5.32512 5.36745 5.38377 5.39195 5.52348 5.58774 5.73411 5.75910 5.82173 5.89800 6.00090 6.06051 6.18160 6.25029 6.38116 6.39424 6.77255 6.79340 6.87702 6.98767 7.55766 7.66089 7.91286 8.08846 8.30895 8.72617 8.96121 9.54668 11.04475 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.004462 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.492070 B = 6273.781103 C = 7875.735825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.015 3.985 10 C 0.122 3.878 11 N -0.716 5.716 12 C 0.537 3.463 13 O -0.552 6.552 14 C -0.183 4.183 15 H 0.122 0.878 16 C -0.140 4.140 17 C -0.101 4.101 18 C -0.080 4.080 19 C 0.038 3.962 20 N -0.530 5.530 21 C 0.010 3.990 22 C 0.220 3.780 23 F -0.191 7.191 24 F -0.205 7.205 25 C 0.047 3.953 26 C -0.077 4.077 27 H 0.262 0.738 28 H 0.020 0.980 29 H 0.023 0.977 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.397 0.603 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 -17.964 7.329 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.000 4.000 11 N -0.365 5.365 12 C 0.322 3.678 13 O -0.431 6.431 14 C -0.204 4.204 15 H 0.140 0.860 16 C -0.177 4.177 17 C -0.101 4.101 18 C -0.118 4.118 19 C -0.089 4.089 20 N -0.253 5.253 21 C -0.120 4.120 22 C 0.165 3.835 23 F -0.172 7.172 24 F -0.186 7.186 25 C -0.081 4.081 26 C -0.115 4.115 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.230 0.770 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.097 0.903 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.781 -18.180 7.613 20.844 hybrid contribution -0.324 1.716 -0.822 1.930 sum -7.104 -16.465 6.791 19.175 Atomic orbital electron populations 1.69960 1.06053 1.26849 1.50348 1.24982 0.94861 0.99293 0.95030 0.86598 0.79539 0.82773 0.78771 1.20133 1.21262 1.20131 1.21014 0.93150 0.90444 1.51381 0.92386 1.19291 0.94106 0.91006 0.97834 1.21713 0.96024 0.81670 1.00608 1.46307 1.10470 1.06340 1.73344 1.19547 0.87472 0.84545 0.76192 1.90663 1.13925 1.87725 1.50747 1.22460 1.04667 0.94035 0.99232 0.85988 1.22981 0.97729 0.95084 1.01903 1.21546 0.96213 1.01041 0.91323 1.21230 0.97388 0.97708 0.95452 1.22503 0.89039 0.94959 1.02400 1.61885 1.03682 1.32120 1.27653 1.23436 0.95911 0.96300 0.96368 1.22892 0.86843 0.88510 0.85296 1.93017 1.60852 1.76487 1.86849 1.92957 1.84303 1.76025 1.65336 1.22455 0.97950 0.97537 0.90118 1.21256 0.91550 0.97301 1.01365 0.92876 0.96125 0.95863 0.92696 0.92697 0.76959 0.87761 0.88211 0.90876 0.90615 0.91391 0.90586 0.87708 0.87707 0.87418 0.90272 0.93026 0.90457 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.38 5.09 -27.89 -0.14 0.24 16 10 C 0.12 2.68 5.61 -4.04 -0.02 2.66 16 11 N -0.72 -13.18 5.41 -60.29 -0.33 -13.51 16 12 C 0.54 9.54 5.85 -10.99 -0.06 9.47 16 13 O -0.55 -11.77 16.55 5.55 0.09 -11.68 16 14 C -0.18 -2.46 5.87 -91.87 -0.54 -3.00 16 15 H 0.12 1.46 8.14 -51.93 -0.42 1.03 16 16 C -0.14 -1.64 9.51 -26.85 -0.26 -1.89 16 17 C -0.10 -1.16 2.02 -154.54 -0.31 -1.47 16 18 C -0.08 -1.00 5.52 -26.48 -0.15 -1.15 16 19 C 0.04 0.47 4.96 -3.74 -0.02 0.45 16 20 N -0.53 -5.51 4.78 -234.44 -1.12 -6.63 16 21 C 0.01 0.08 5.97 -3.82 -0.02 0.06 16 22 C 0.22 2.21 5.14 37.16 0.19 2.40 16 23 F -0.19 -2.75 13.99 2.25 0.03 -2.72 16 24 F -0.20 -2.31 13.94 2.25 0.03 -2.27 16 25 C 0.05 0.48 3.95 -3.74 -0.01 0.47 16 26 C -0.08 -0.74 5.87 -26.48 -0.16 -0.90 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.02 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 1.26 8.14 -51.92 -0.42 0.83 16 32 H 0.40 6.84 8.21 -40.82 -0.34 6.50 16 33 H 0.10 1.37 7.89 -51.92 -0.41 0.96 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.09 6.85 -51.93 -0.36 0.74 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.99 5.28 -51.93 -0.27 0.71 16 38 H 0.08 0.91 7.88 -51.93 -0.41 0.50 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.77 7.82 -51.93 -0.41 0.36 16 41 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 0.73 7.65 -51.93 -0.40 0.34 16 43 H 0.05 0.63 5.99 -51.92 -0.31 0.32 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -32.36 361.86 -9.12 -41.48 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -7.09 Total: 4.92 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.91 Total: -6.00 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.71 Total: -45.69 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.06 Total: -4.99 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.36 -9.12 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273844488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.793 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds