Wall clock time and date at job start Tue Mar 31 2020 11:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 119.99929 * 2 1 4 4 H 1.48501 * 109.47189 * 270.00445 * 3 2 1 5 5 H 1.48509 * 109.47066 * 30.00288 * 3 2 1 6 6 H 1.48498 * 109.47507 * 150.00242 * 3 2 1 7 7 C 1.37879 * 120.00578 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99619 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47089 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.47123 * 180.02562 * 10 9 7 12 12 C 1.46920 * 124.35038 * 90.00526 * 11 10 9 13 13 C 1.53830 * 105.34381 * 163.55159 * 12 11 10 14 14 C 1.53956 * 102.46545 * 24.71075 * 13 12 11 15 15 C 1.34492 * 124.35157 * 269.97844 * 11 10 9 16 16 O 1.21285 * 124.94610 * 0.40028 * 15 11 10 17 17 C 1.52240 * 110.58493 * 266.85895 * 13 12 11 18 18 C 1.53259 * 109.35526 * 293.64801 * 17 13 12 19 19 C 1.53128 * 109.05726 * 303.56100 * 18 17 13 20 20 C 1.53025 * 109.41378 * 58.24587 * 19 18 17 21 21 N 1.45978 * 110.74112 * 142.82114 * 13 12 11 22 22 C 1.46900 * 111.00212 * 299.62022 * 21 13 12 23 23 C 1.52998 * 109.47306 * 164.69494 * 22 21 13 24 24 F 1.39891 * 109.47217 * 293.23385 * 23 22 21 25 25 F 1.39904 * 109.47005 * 53.23579 * 23 22 21 26 26 H 0.96997 * 120.00515 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46782 * 60.00639 * 9 7 2 28 28 H 1.08999 * 109.47296 * 300.00566 * 9 7 2 29 29 H 1.09002 * 109.46890 * 60.00579 * 10 9 7 30 30 H 1.08999 * 109.47411 * 300.00369 * 10 9 7 31 31 H 1.08996 * 110.27188 * 44.57845 * 12 11 10 32 32 H 1.09010 * 110.26479 * 282.51887 * 12 11 10 33 33 H 1.09004 * 110.50840 * 94.52174 * 14 13 12 34 34 H 1.09005 * 110.50989 * 217.22558 * 14 13 12 35 35 H 1.08998 * 109.48742 * 53.61276 * 17 13 12 36 36 H 1.09004 * 109.49027 * 173.66145 * 17 13 12 37 37 H 1.09008 * 109.53690 * 63.42652 * 18 17 13 38 38 H 1.08998 * 109.54231 * 183.59409 * 18 17 13 39 39 H 1.09004 * 109.48385 * 178.23095 * 19 18 17 40 40 H 1.09003 * 109.47952 * 298.24982 * 19 18 17 41 41 H 1.08999 * 109.46946 * 180.24271 * 20 19 18 42 42 H 1.08997 * 109.47160 * 60.24357 * 20 19 18 43 43 H 1.08995 * 109.46738 * 284.69745 * 22 21 13 44 44 H 1.09002 * 109.47167 * 44.69021 * 22 21 13 45 45 H 1.09004 * 109.47023 * 173.22911 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 1.0990 -5.6484 -1.2145 13 6 0.7605 -7.0747 -0.7482 14 6 0.4084 -6.8645 0.7357 15 6 1.1335 -5.5885 1.1089 16 8 1.3418 -5.2143 2.2436 17 6 1.9730 -7.9849 -0.8863 18 6 2.3120 -8.1577 -2.3709 19 6 1.0821 -8.6993 -3.1049 20 6 -0.0896 -7.7336 -2.9152 21 7 -0.3871 -7.5998 -1.4819 22 6 -1.5764 -6.7647 -1.2669 23 6 -2.6334 -7.1015 -2.3205 24 9 -2.1741 -6.7117 -3.5831 25 9 -2.8732 -8.4798 -2.3165 26 1 -0.4851 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6247 -2.5571 0.8896 29 1 2.8720 -3.6042 0.8895 30 1 2.8721 -3.6042 -0.8905 31 1 1.9149 -5.6709 -1.9369 32 1 0.2196 -5.1752 -1.6515 33 1 -0.6677 -6.7424 0.8593 34 1 0.7704 -7.6992 1.3361 35 1 2.8226 -7.5398 -0.3686 36 1 1.7492 -8.9577 -0.4484 37 1 2.5945 -7.1940 -2.7948 38 1 3.1396 -8.8591 -2.4766 39 1 1.3058 -8.7953 -4.1674 40 1 0.8177 -9.6760 -2.6995 41 1 -0.9669 -8.1204 -3.4338 42 1 0.1735 -6.7582 -3.3243 43 1 -1.9801 -6.9566 -0.2729 44 1 -1.3019 -5.7131 -1.3507 45 1 -3.5576 -6.5713 -2.0904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273845633.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:59 Heat of formation + Delta-G solvation = -123.857248 kcal Electronic energy + Delta-G solvation = -28538.686325 eV Core-core repulsion = 24419.884884 eV Total energy + Delta-G solvation = -4118.801441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.32801 -47.13672 -41.25208 -38.40798 -35.53401 -34.36674 -33.74896 -32.27381 -29.76548 -29.28189 -28.06875 -26.30814 -24.56799 -24.50094 -22.49467 -21.77184 -21.20631 -19.44347 -18.43199 -18.05445 -17.53399 -16.97959 -16.58467 -15.95454 -15.79704 -15.31903 -15.03045 -14.74050 -14.53514 -14.44376 -14.10155 -13.93297 -13.54433 -13.48037 -13.40742 -13.05317 -12.99737 -12.69562 -12.54427 -12.36414 -12.19737 -11.99838 -11.72573 -11.47041 -11.34535 -11.14980 -10.97141 -10.81894 -10.73735 -10.53404 -10.22788 -10.04251 -9.91406 -9.44184 -9.16954 -8.60717 -8.41584 -8.05664 -6.06708 -4.10213 2.97818 3.28526 3.31183 3.34935 3.38246 3.49716 3.57757 3.98868 4.24053 4.30194 4.42143 4.47852 4.57674 4.64515 4.75160 4.79334 4.99656 5.03653 5.20460 5.27576 5.29838 5.32997 5.41000 5.53588 5.56914 5.64103 5.67556 5.73543 5.80319 5.84035 5.92854 6.01549 6.04316 6.21253 6.40882 6.65702 6.74934 6.78625 6.92353 7.44553 7.61245 7.78941 7.92300 8.28917 8.61416 8.96227 9.54212 11.04799 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015024 B = 0.003850 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.202761 B = 7270.265963 C = 7936.122300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.013 3.987 10 C 0.127 3.873 11 N -0.606 5.606 12 C 0.073 3.927 13 C 0.106 3.894 14 C -0.150 4.150 15 C 0.512 3.488 16 O -0.532 6.532 17 C -0.098 4.098 18 C -0.125 4.125 19 C -0.115 4.115 20 C 0.032 3.968 21 N -0.510 5.510 22 C -0.014 4.014 23 C 0.263 3.737 24 F -0.203 7.203 25 F -0.196 7.196 26 H 0.261 0.739 27 H 0.015 0.985 28 H 0.021 0.979 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.045 0.955 43 H 0.111 0.889 44 H 0.082 0.918 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.756 -19.688 -7.494 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.025 4.025 10 C 0.007 3.993 11 N -0.339 5.339 12 C -0.053 4.053 13 C 0.016 3.984 14 C -0.190 4.190 15 C 0.298 3.702 16 O -0.409 6.409 17 C -0.135 4.135 18 C -0.162 4.162 19 C -0.153 4.153 20 C -0.095 4.095 21 N -0.234 5.234 22 C -0.142 4.142 23 C 0.209 3.791 24 F -0.184 7.184 25 F -0.177 7.177 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.039 0.961 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.063 0.937 43 H 0.129 0.871 44 H 0.099 0.901 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.843 -19.788 -6.753 21.101 hybrid contribution 0.484 1.860 -0.529 1.993 sum -2.359 -17.928 -7.282 19.493 Atomic orbital electron populations 1.69959 1.06138 1.26749 1.50363 1.24992 0.94848 0.99329 0.95019 0.86547 0.79898 0.83206 0.78087 1.20620 1.21136 1.19745 1.21078 0.93055 0.90654 1.51363 0.92462 1.19395 0.94426 0.91125 0.97571 1.21827 0.95074 0.80971 1.01410 1.48537 1.56223 1.23432 1.05731 1.22760 1.01066 0.92215 0.89214 1.21363 0.91479 0.92378 0.93203 1.22523 1.02854 0.98064 0.95559 1.20719 0.79124 0.85508 0.84820 1.90721 1.57281 1.71838 1.21049 1.21432 0.95393 0.99551 0.97167 1.21676 0.97926 1.01472 0.95141 1.21587 0.94157 0.99426 1.00127 1.22767 1.00026 0.99310 0.87354 1.62008 1.02468 1.48344 1.10562 1.23563 0.91607 0.99033 0.99998 1.21974 0.98656 0.77999 0.80457 1.92957 1.90511 1.90652 1.44275 1.93000 1.95414 1.32803 1.96513 0.92910 0.96685 0.96089 0.90977 0.91747 0.90145 0.91157 0.87596 0.87750 0.90888 0.90399 0.91770 0.91425 0.91416 0.91039 0.88750 0.93702 0.87061 0.90062 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.01 0.33 5.30 -27.88 -0.15 0.18 16 10 C 0.13 2.67 5.87 -4.04 -0.02 2.65 16 11 N -0.61 -10.75 2.94 -172.60 -0.51 -11.25 16 12 C 0.07 1.00 5.01 -3.38 -0.02 0.99 16 13 C 0.11 1.20 0.60 -131.56 -0.08 1.12 16 14 C -0.15 -1.92 5.87 -27.03 -0.16 -2.07 16 15 C 0.51 9.28 8.03 -10.75 -0.09 9.20 16 16 O -0.53 -12.05 17.60 5.55 0.10 -11.95 16 17 C -0.10 -0.97 4.76 -26.98 -0.13 -1.10 16 18 C -0.12 -1.10 5.80 -26.53 -0.15 -1.25 16 19 C -0.12 -1.00 6.07 -26.65 -0.16 -1.16 16 20 C 0.03 0.32 3.80 -3.76 -0.01 0.31 16 21 N -0.51 -5.25 4.52 -218.93 -0.99 -6.24 16 22 C -0.01 -0.13 4.72 -3.82 -0.02 -0.15 16 23 C 0.26 2.28 5.13 37.16 0.19 2.47 16 24 F -0.20 -2.12 13.98 2.25 0.03 -2.08 16 25 F -0.20 -1.99 16.22 2.25 0.04 -1.96 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.60 7.93 -51.93 -0.41 1.19 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 1.04 6.20 -51.93 -0.32 0.71 16 32 H 0.07 1.01 5.63 -51.92 -0.29 0.72 16 33 H 0.11 1.24 5.62 -51.93 -0.29 0.95 16 34 H 0.10 1.20 7.88 -51.93 -0.41 0.79 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.60 6.54 -51.92 -0.34 0.26 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.98 4.78 -51.93 -0.25 0.73 16 42 H 0.04 0.48 6.96 -51.93 -0.36 0.12 16 43 H 0.11 0.94 6.55 -51.93 -0.34 0.60 16 44 H 0.08 0.90 5.64 -51.93 -0.29 0.60 16 45 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -33.30 347.97 -8.23 -41.54 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.65 Total: -1.55 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -1.21 Total: -2.26 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.76 Total: -43.57 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.10 Total: -11.95 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.07 Total: -4.04 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.30 -8.23 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273845633.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.319 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds