Wall clock time and date at job start Tue Mar 31 2020 11:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46730 * 2 1 4 4 C 1.53005 * 109.46958 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47218 * 180.02562 * 4 3 2 6 6 C 1.46598 * 124.27404 * 90.00082 * 5 4 3 7 7 C 1.53822 * 106.05177 * 164.42194 * 6 5 4 8 8 F 1.39904 * 112.68130 * 142.53903 * 7 6 5 9 9 C 1.53193 * 110.51058 * 268.92497 * 7 6 5 10 10 N 1.47304 * 107.74269 * 109.63255 * 9 7 6 11 11 C 1.46897 * 110.99938 * 141.32858 * 10 9 7 12 12 C 1.52995 * 109.47293 * 170.00683 * 11 10 9 13 13 C 1.50705 * 109.47314 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00084 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99862 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00346 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99839 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47186 * 59.99775 * 17 15 13 19 19 H 1.48501 * 109.46969 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46994 * 299.99749 * 17 15 13 21 21 C 1.47564 * 107.62828 * 19.67790 * 10 9 7 22 22 C 1.54334 * 105.54429 * 329.28637 * 21 10 9 23 23 F 1.39905 * 112.95518 * 152.12100 * 22 21 10 24 24 C 1.33812 * 124.36011 * 270.88140 * 5 4 3 25 25 O 1.21280 * 124.46447 * 1.60169 * 24 5 4 26 26 H 1.09008 * 109.47451 * 59.99550 * 1 2 3 27 27 H 1.09004 * 109.47312 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47220 * 299.99736 * 1 2 3 29 29 H 1.09004 * 109.46793 * 240.00829 * 2 1 3 30 30 H 1.08994 * 109.47388 * 120.00551 * 2 1 3 31 31 H 1.08995 * 109.46844 * 60.00630 * 3 2 1 32 32 H 1.09000 * 109.47382 * 300.00069 * 3 2 1 33 33 H 1.08998 * 109.46730 * 59.99836 * 4 3 2 34 34 H 1.09002 * 109.46625 * 300.00452 * 4 3 2 35 35 H 1.08998 * 110.13410 * 45.27372 * 6 5 4 36 36 H 1.09000 * 110.13347 * 283.57159 * 6 5 4 37 37 H 1.08997 * 109.81036 * 229.19533 * 9 7 6 38 38 H 1.09010 * 109.80193 * 350.07884 * 9 7 6 39 39 H 1.09006 * 109.47268 * 290.00069 * 11 10 9 40 40 H 1.08998 * 109.47250 * 50.00153 * 11 10 9 41 41 H 1.09004 * 109.47180 * 299.99700 * 12 11 10 42 42 H 1.08998 * 109.47405 * 59.99565 * 12 11 10 43 43 H 0.96994 * 120.00306 * 179.97438 * 16 15 13 44 44 H 1.08995 * 110.23466 * 210.26769 * 21 10 9 45 45 H 1.09000 * 110.23268 * 88.30688 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.3339 3.6014 1.2117 7 6 5.1801 4.8046 0.7617 8 9 4.8601 5.9779 1.4532 9 6 6.6731 4.4724 0.8460 10 7 7.1869 4.3618 -0.5301 11 6 8.5327 4.9407 -0.6377 12 6 9.1312 4.5901 -2.0013 13 6 10.5121 5.1834 -2.1115 14 1 10.9217 5.7540 -1.2911 15 6 11.2526 4.9979 -3.2596 16 7 10.7541 4.3027 -4.2585 17 14 12.9646 5.7328 -3.3958 18 1 13.8269 5.1817 -2.3198 19 1 13.5454 5.3925 -4.7195 20 1 12.8820 7.2090 -3.2568 21 6 6.2382 5.0603 -1.4187 22 6 4.8550 4.9031 -0.7524 23 9 3.9793 5.9502 -1.0592 24 6 4.2935 3.5421 -1.1042 25 8 4.1043 3.1452 -2.2345 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6766 1.9562 0.8900 32 1 1.6765 1.9564 -0.8900 33 1 3.9328 0.9289 -0.8908 34 1 3.9336 0.9286 0.8891 35 1 4.8918 2.9968 1.9267 36 1 3.4005 3.9448 1.6576 37 1 7.1993 5.2677 1.3739 38 1 6.8119 3.5261 1.3691 39 1 8.4714 6.0243 -0.5357 40 1 9.1662 4.5368 0.1520 41 1 9.1926 3.5066 -2.1034 42 1 8.4977 4.9940 -2.7910 43 1 11.2749 4.1725 -5.0663 44 1 6.2359 4.5979 -2.4057 45 1 6.5014 6.1152 -1.4965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:17 Heat of formation + Delta-G solvation = -125.543203 kcal Electronic energy + Delta-G solvation = -27726.098334 eV Core-core repulsion = 23607.223785 eV Total energy + Delta-G solvation = -4118.874550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.56249 -47.50211 -40.88556 -38.03750 -36.75146 -35.38171 -33.42511 -31.98855 -29.97180 -29.74281 -28.17540 -26.16266 -25.10620 -23.87176 -22.20403 -21.45796 -21.29689 -20.37957 -19.97909 -17.64840 -17.01680 -16.60643 -16.25555 -15.97736 -15.65075 -15.50227 -15.34009 -15.12609 -14.58688 -14.48704 -14.28871 -13.94673 -13.84119 -13.71230 -13.41802 -13.30910 -13.15544 -12.83634 -12.71125 -12.33129 -12.04747 -11.99189 -11.74820 -11.59914 -11.45985 -11.35253 -11.19660 -10.93081 -10.89486 -10.72265 -10.59276 -10.02135 -9.77598 -9.50602 -9.21082 -9.06094 -8.37793 -8.18758 -6.01876 -4.05795 2.24601 2.44735 3.30534 3.32014 3.36932 3.38536 3.53199 3.64823 3.85234 4.06039 4.36720 4.44052 4.53353 4.57684 4.59333 4.75451 4.91163 4.97061 5.03395 5.21821 5.25020 5.30677 5.33856 5.42684 5.46154 5.50194 5.55525 5.62051 5.67441 5.80133 5.87323 5.90423 5.99022 6.10552 6.18518 6.21246 6.69454 6.76499 7.03912 7.13684 7.66919 7.79244 7.83051 8.00569 8.36088 9.00818 9.58296 11.09236 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.018431 B = 0.003156 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.815078 B = 8868.824412 C = 9571.665380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.139 4.139 4 C 0.129 3.871 5 N -0.604 5.604 6 C 0.095 3.905 7 C 0.078 3.922 8 F -0.171 7.171 9 C 0.027 3.973 10 N -0.512 5.512 11 C 0.057 3.943 12 C 0.029 3.971 13 C -0.526 4.526 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.039 3.961 22 C 0.063 3.937 23 F -0.160 7.160 24 C 0.528 3.472 25 O -0.493 6.493 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.031 0.969 40 H 0.070 0.930 41 H 0.027 0.973 42 H 0.017 0.983 43 H 0.262 0.738 44 H 0.114 0.886 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.078 -5.555 14.300 23.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.178 4.178 4 C 0.008 3.992 5 N -0.338 5.338 6 C -0.029 4.029 7 C 0.058 3.942 8 F -0.151 7.151 9 C -0.102 4.102 10 N -0.237 5.237 11 C -0.069 4.069 12 C -0.009 4.009 13 C -0.565 4.565 14 H 0.072 0.928 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.090 4.090 22 C 0.040 3.960 23 F -0.140 7.140 24 C 0.311 3.689 25 O -0.365 6.365 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.036 0.964 43 H 0.072 0.928 44 H 0.132 0.868 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.123 -6.396 13.362 23.407 hybrid contribution 0.763 1.591 0.222 1.778 sum -17.360 -4.805 13.584 22.561 Atomic orbital electron populations 1.21758 0.95626 1.01657 1.01900 1.21442 0.96147 0.95988 1.02384 1.22042 0.95164 0.97669 1.02915 1.21538 0.93888 0.79703 1.04090 1.47798 1.65823 1.14066 1.06078 1.22419 1.00255 0.91769 0.88503 1.22475 0.98112 0.83263 0.90344 1.92932 1.94017 1.48165 1.80013 1.23249 0.89124 1.03441 0.94351 1.64097 1.03590 1.53890 1.02083 1.22666 0.85402 0.95886 1.02984 1.19068 0.94804 0.97901 0.89092 1.21094 1.00496 1.33831 1.01101 0.92753 1.24993 0.98213 0.95220 0.95793 1.69960 1.37637 1.39773 1.05524 0.86641 0.84439 0.79579 0.77225 1.20216 1.21244 1.20263 1.23338 0.85916 1.00436 0.99265 1.22619 0.92121 0.85625 0.95657 1.92930 1.69975 1.57262 1.93871 1.20133 0.77368 0.86245 0.85121 1.90769 1.51198 1.73468 1.21087 0.92651 0.92643 0.92809 0.91530 0.91767 0.91669 0.91285 0.89167 0.89695 0.87861 0.89410 0.90889 0.88021 0.95100 0.91143 0.95481 0.96425 0.92818 0.86832 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.82 5.93 -26.73 -0.16 -0.98 16 3 C -0.14 -1.14 5.54 -26.73 -0.15 -1.29 16 4 C 0.13 1.17 5.89 -4.04 -0.02 1.15 16 5 N -0.60 -6.99 2.91 -173.10 -0.50 -7.49 16 6 C 0.09 0.88 6.67 -3.56 -0.02 0.85 16 7 C 0.08 0.97 1.85 -88.94 -0.16 0.81 16 8 F -0.17 -2.24 16.80 2.25 0.04 -2.20 16 9 C 0.03 0.35 6.25 -3.50 -0.02 0.33 16 10 N -0.51 -8.82 5.15 -232.73 -1.20 -10.02 16 11 C 0.06 1.13 4.57 -3.83 -0.02 1.11 16 12 C 0.03 0.73 5.03 -27.88 -0.14 0.59 16 13 C -0.53 -14.63 9.11 -34.44 -0.31 -14.95 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 17 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.04 0.68 5.04 -2.76 -0.01 0.67 16 22 C 0.06 0.98 1.86 -89.60 -0.17 0.81 16 23 F -0.16 -2.63 16.89 2.25 0.04 -2.59 16 24 C 0.53 8.28 7.06 -11.09 -0.08 8.20 16 25 O -0.49 -9.39 17.29 5.56 0.10 -9.29 16 26 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.96 7.94 -51.93 -0.41 0.54 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.67 7.43 -51.93 -0.39 0.28 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.92 7.63 -51.93 -0.40 0.52 16 38 H 0.10 1.09 7.28 -51.92 -0.38 0.71 16 39 H 0.03 0.61 7.81 -51.93 -0.41 0.20 16 40 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.02 0.48 7.44 -51.93 -0.39 0.09 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.11 2.23 7.64 -51.93 -0.40 1.83 16 45 H 0.07 1.29 7.67 -51.93 -0.40 0.89 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -32.44 369.76 -8.59 -41.03 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -7.35 Total: -3.75 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.00 Total: -1.69 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -0.97 Total: -43.54 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.10 Total: -9.29 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.08 Total: -4.79 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.44 -8.59 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.514 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds