Wall clock time and date at job start Tue Mar 31 2020 11:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47386 * 2 1 4 4 H 1.09002 * 109.47059 * 304.99914 * 3 2 1 5 5 C 1.53001 * 109.47418 * 184.99854 * 3 2 1 6 6 N 1.46503 * 109.46973 * 64.99838 * 3 2 1 7 7 C 1.46762 * 124.33839 * 240.02376 * 6 3 2 8 8 C 1.54266 * 105.50939 * 197.25911 * 7 6 3 9 9 F 1.39902 * 113.11121 * 95.79558 * 8 7 6 10 10 C 1.53444 * 109.59628 * 223.69520 * 8 7 6 11 11 N 1.47035 * 108.07209 * 92.47744 * 10 8 7 12 12 C 1.46893 * 110.99791 * 236.00744 * 11 10 8 13 13 C 1.53001 * 109.47029 * 191.55050 * 12 11 10 14 14 C 1.50705 * 109.47435 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99793 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00055 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00288 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99848 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47320 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47389 * 119.99979 * 18 16 14 21 21 H 1.48504 * 109.47145 * 240.00463 * 18 16 14 22 22 C 1.47096 * 109.22282 * 358.71797 * 11 10 8 23 23 C 1.54021 * 106.85875 * 18.20728 * 22 11 10 24 24 F 1.39897 * 112.99227 * 96.32571 * 23 22 11 25 25 C 1.34371 * 124.34128 * 60.02981 * 6 3 2 26 26 O 1.21278 * 124.88644 * 359.96577 * 25 6 3 27 27 H 1.09001 * 109.46872 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46907 * 299.99987 * 1 2 3 29 29 H 1.08997 * 109.47082 * 60.00456 * 1 2 3 30 30 H 1.08997 * 109.47532 * 239.99587 * 2 1 3 31 31 H 1.09007 * 109.46899 * 120.00039 * 2 1 3 32 32 H 1.09002 * 109.47054 * 300.00062 * 5 3 2 33 33 H 1.08999 * 109.47083 * 59.99897 * 5 3 2 34 34 H 1.09001 * 109.46946 * 179.97438 * 5 3 2 35 35 H 1.09000 * 110.24213 * 316.27177 * 7 6 3 36 36 H 1.08997 * 110.23722 * 78.16512 * 7 6 3 37 37 H 1.09003 * 109.75442 * 332.81518 * 10 8 7 38 38 H 1.09000 * 109.75032 * 212.13625 * 10 8 7 39 39 H 1.09002 * 109.47502 * 311.55203 * 12 11 10 40 40 H 1.09004 * 109.47593 * 71.55303 * 12 11 10 41 41 H 1.08993 * 109.47694 * 300.00358 * 13 12 11 42 42 H 1.09003 * 109.47103 * 60.00600 * 13 12 11 43 43 H 0.97002 * 120.00230 * 180.02562 * 17 16 14 44 44 H 1.09000 * 109.97770 * 137.55772 * 22 11 10 45 45 H 1.08997 * 109.97978 * 258.81026 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1257 6 7 1.6525 2.0974 1.2518 7 6 0.8072 3.2945 1.3326 8 6 1.0324 3.8637 2.7487 9 9 1.9973 4.8760 2.7866 10 6 -0.3144 4.2750 3.3582 11 7 -0.8340 3.1350 4.1277 12 6 -2.1756 2.7555 3.6654 13 6 -2.7983 1.7725 4.6587 14 6 -4.1750 1.3836 4.1848 15 1 -4.5665 1.7961 3.2666 16 6 -4.9343 0.5006 4.9228 17 7 -4.4574 -0.0021 6.0406 18 14 -6.6405 0.0180 4.3349 19 1 -6.9409 0.7173 3.0597 20 1 -6.6929 -1.4502 4.1191 21 1 -7.6444 0.4041 5.3588 22 6 0.1021 2.0061 4.0128 23 6 1.4465 2.5874 3.5366 24 9 2.3371 2.8356 4.5865 25 6 2.0253 1.6793 2.4732 26 8 2.7247 0.7130 2.6920 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.9995 0.9052 0.7162 33 1 3.8533 0.9569 -1.0570 34 1 3.9281 2.4720 -0.1261 35 1 1.1116 4.0226 0.5808 36 1 -0.2402 3.0264 1.1948 37 1 -1.0147 4.5332 2.5638 38 1 -0.1739 5.1313 4.0178 39 1 -2.8009 3.6456 3.5947 40 1 -2.1025 2.2842 2.6852 41 1 -2.1732 0.8824 4.7295 42 1 -2.8716 2.2438 5.6388 43 1 -4.9914 -0.6237 6.5596 44 1 0.2268 1.5255 4.9831 45 1 -0.2714 1.2852 3.2856 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038702.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:36 Heat of formation + Delta-G solvation = -120.026117 kcal Electronic energy + Delta-G solvation = -28796.731302 eV Core-core repulsion = 24678.095992 eV Total energy + Delta-G solvation = -4118.635311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.44119 -47.44454 -41.09531 -38.42309 -36.73498 -34.91837 -33.21089 -31.33679 -30.25152 -29.90536 -28.46444 -26.26030 -25.08169 -23.94366 -22.66093 -21.78472 -21.38134 -20.27641 -19.41536 -17.68505 -17.27846 -16.42442 -16.15111 -15.92222 -15.73702 -15.49017 -15.36399 -14.66733 -14.54081 -14.14945 -14.05247 -13.95511 -13.80075 -13.72128 -13.56255 -13.36166 -13.08531 -12.71077 -12.61076 -12.40961 -12.17424 -12.10164 -11.93143 -11.55657 -11.40751 -11.25092 -11.13161 -11.09583 -10.98567 -10.75116 -10.58735 -10.07164 -9.71383 -9.54850 -9.22455 -9.10220 -8.42855 -8.13178 -6.06692 -4.10551 2.11935 2.38647 3.26387 3.31623 3.34278 3.36602 3.49841 3.56967 4.00151 4.12320 4.25761 4.32070 4.43371 4.51778 4.69369 4.81830 4.92437 4.95513 5.12608 5.18832 5.29169 5.29688 5.35708 5.39164 5.43577 5.59829 5.65193 5.72734 5.81283 5.84539 5.92242 5.98116 6.04801 6.09412 6.16944 6.30503 6.64841 6.72108 7.03161 7.13106 7.61938 7.74652 7.76341 7.96020 8.30972 8.96461 9.54066 11.04497 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.004276 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.815328 B = 6546.657889 C = 7455.992247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.143 4.143 3 C 0.158 3.842 4 H 0.093 0.907 5 C -0.170 4.170 6 N -0.606 5.606 7 C 0.087 3.913 8 C 0.074 3.926 9 F -0.169 7.169 10 C 0.036 3.964 11 N -0.515 5.515 12 C 0.056 3.944 13 C 0.027 3.973 14 C -0.525 4.525 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.048 3.952 23 C 0.063 3.937 24 F -0.156 7.156 25 C 0.516 3.484 26 O -0.494 6.494 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.027 0.973 41 H 0.017 0.983 42 H 0.028 0.972 43 H 0.261 0.739 44 H 0.110 0.890 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.471 6.637 -14.170 20.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.181 4.181 3 C 0.057 3.943 4 H 0.111 0.889 5 C -0.227 4.227 6 N -0.341 5.341 7 C -0.037 4.037 8 C 0.053 3.947 9 F -0.149 7.149 10 C -0.093 4.093 11 N -0.239 5.239 12 C -0.071 4.071 13 C -0.010 4.010 14 C -0.564 4.564 15 H 0.073 0.927 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.080 4.080 23 C 0.040 3.960 24 F -0.136 7.136 25 C 0.300 3.700 26 O -0.367 6.367 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.045 0.955 41 H 0.035 0.965 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.128 0.872 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.816 6.118 -13.453 19.562 hybrid contribution -0.743 -0.350 -0.970 1.271 sum 12.072 5.767 -14.423 19.673 Atomic orbital electron populations 1.21752 0.94941 1.02373 1.01787 1.21990 0.96831 0.95498 1.03776 1.21152 0.95513 0.93750 0.83904 0.88896 1.22199 0.94609 1.02639 1.03299 1.48196 1.50734 1.28963 1.06227 1.22847 0.97053 0.87793 0.96008 1.22965 0.89802 0.85694 0.96202 1.92919 1.64288 1.60551 1.97152 1.23144 0.91052 0.97408 0.97734 1.63384 1.03437 1.03965 1.53105 1.22742 0.85767 1.00503 0.98038 1.19090 0.94676 0.92866 0.94407 1.21149 1.00534 1.26564 1.08172 0.92682 1.24983 0.98201 0.96079 0.94883 1.69974 1.37404 1.31012 1.14435 0.86553 0.84474 0.78286 0.78764 1.19775 1.21010 1.20919 1.23174 0.86330 0.94261 1.04219 1.22791 0.91690 0.95587 0.85940 1.92942 1.68920 1.94663 1.57074 1.20501 0.80271 0.85242 0.83986 1.90727 1.36136 1.26712 1.83154 0.92180 0.92645 0.92800 0.90579 0.90100 0.90858 0.91085 0.92307 0.88028 0.88175 0.90099 0.88308 0.91041 0.95475 0.96500 0.95331 0.92909 0.87155 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.80 37.16 0.36 -1.23 16 2 C -0.14 -1.45 5.36 -26.73 -0.14 -1.59 16 3 C 0.16 1.49 2.86 -67.93 -0.19 1.29 16 4 H 0.09 0.65 8.07 -51.93 -0.42 0.23 16 5 C -0.17 -1.56 9.20 37.16 0.34 -1.22 16 6 N -0.61 -6.99 2.28 -164.97 -0.38 -7.36 16 7 C 0.09 0.85 6.42 -3.24 -0.02 0.83 16 8 C 0.07 0.92 1.90 -88.34 -0.17 0.75 16 9 F -0.17 -2.24 17.11 2.25 0.04 -2.21 16 10 C 0.04 0.45 6.12 -3.52 -0.02 0.43 16 11 N -0.51 -8.42 5.11 -233.40 -1.19 -9.62 16 12 C 0.06 1.02 4.47 -3.83 -0.02 1.01 16 13 C 0.03 0.66 5.02 -27.88 -0.14 0.52 16 14 C -0.53 -14.05 9.11 -34.44 -0.31 -14.36 16 15 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 18 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.05 0.80 5.08 -3.18 -0.02 0.78 16 23 C 0.06 0.97 1.83 -89.54 -0.16 0.81 16 24 F -0.16 -2.72 17.09 2.25 0.04 -2.68 16 25 C 0.52 7.78 6.22 -10.85 -0.07 7.71 16 26 O -0.49 -8.77 15.05 5.56 0.08 -8.69 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.68 7.75 -51.93 -0.40 0.28 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.05 6.63 -51.92 -0.34 0.70 16 32 H 0.07 0.87 6.78 -51.93 -0.35 0.52 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.90 7.57 -51.93 -0.39 0.51 16 37 H 0.08 0.84 7.00 -51.93 -0.36 0.47 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.26 7.99 -51.93 -0.41 0.85 16 40 H 0.03 0.47 7.82 -51.93 -0.41 0.06 16 41 H 0.02 0.44 7.52 -51.93 -0.39 0.05 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 44 H 0.11 1.97 8.14 -51.93 -0.42 1.54 16 45 H 0.08 1.25 7.07 -51.93 -0.37 0.88 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -31.32 363.15 -8.08 -39.40 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -7.20 Total: -2.15 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -0.66 Total: -2.71 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: -0.83 Total: -42.33 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.69 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.08 Total: -4.88 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.32 -8.08 -39.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038702.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.630 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds