Wall clock time and date at job start Tue Mar 31 2020 11:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47005 * 2 1 4 4 H 1.09005 * 109.46992 * 54.99972 * 3 2 1 5 5 C 1.53001 * 109.47178 * 174.99772 * 3 2 1 6 6 N 1.46503 * 109.47133 * 294.99885 * 3 2 1 7 7 C 1.46770 * 124.34251 * 119.99668 * 6 3 2 8 8 C 1.54250 * 105.46943 * 197.36178 * 7 6 3 9 9 F 1.39899 * 113.33012 * 96.81417 * 8 7 6 10 10 C 1.53707 * 109.53664 * 224.34385 * 8 7 6 11 11 N 1.47107 * 106.87930 * 80.92205 * 10 8 7 12 12 C 1.46898 * 111.00164 * 140.68258 * 11 10 8 13 13 C 1.52995 * 109.47444 * 53.26490 * 12 11 10 14 14 C 1.50699 * 109.47088 * 174.69097 * 13 12 11 15 15 H 1.07996 * 120.00174 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99946 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99867 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00004 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47258 * 90.00103 * 18 16 14 20 20 H 1.48504 * 109.47251 * 209.99763 * 18 16 14 21 21 H 1.48493 * 109.47452 * 329.99785 * 18 16 14 22 22 C 1.46980 * 109.24850 * 17.94757 * 11 10 8 23 23 C 1.53733 * 108.12661 * 358.73667 * 22 11 10 24 24 F 1.39909 * 112.74543 * 107.45483 * 23 22 11 25 25 C 1.34381 * 124.34403 * 300.03856 * 6 3 2 26 26 O 1.21284 * 124.89730 * 0.10566 * 25 6 3 27 27 H 1.09001 * 109.47195 * 60.00126 * 1 2 3 28 28 H 1.09003 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47226 * 300.00172 * 1 2 3 30 30 H 1.09002 * 109.47486 * 240.00507 * 2 1 3 31 31 H 1.09001 * 109.47195 * 119.99874 * 2 1 3 32 32 H 1.08997 * 109.47510 * 300.00379 * 5 3 2 33 33 H 1.09005 * 109.46996 * 60.00202 * 5 3 2 34 34 H 1.08993 * 109.47192 * 180.02562 * 5 3 2 35 35 H 1.09000 * 110.24558 * 78.36318 * 7 6 3 36 36 H 1.09002 * 110.24970 * 316.36334 * 7 6 3 37 37 H 1.08993 * 109.97973 * 321.56647 * 10 8 7 38 38 H 1.09001 * 110.00941 * 200.28900 * 10 8 7 39 39 H 1.09004 * 109.46939 * 173.27073 * 12 11 10 40 40 H 1.09003 * 109.46932 * 293.26482 * 12 11 10 41 41 H 1.09000 * 109.47208 * 294.69264 * 13 12 11 42 42 H 1.09002 * 109.47121 * 54.69241 * 13 12 11 43 43 H 0.97004 * 120.00001 * 179.97438 * 17 16 14 44 44 H 1.09007 * 109.73568 * 118.40389 * 22 11 10 45 45 H 1.08997 * 109.74238 * 239.06006 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5648 1.4445 0.1258 6 7 1.6524 2.0976 -1.2518 7 6 0.8074 3.2949 -1.3328 8 6 0.3128 3.3515 -2.7927 9 9 -0.9616 2.8015 -2.9677 10 6 0.4301 4.7906 -3.3198 11 7 1.8328 4.9869 -3.7171 12 6 1.9244 5.7741 -4.9540 13 6 1.1357 7.0749 -4.7903 14 6 1.3360 7.9404 -6.0076 15 1 1.9634 7.5972 -6.8169 16 6 0.7191 9.1708 -6.0877 17 7 -0.0445 9.5889 -5.1020 18 14 0.9679 10.2439 -7.5963 19 1 -0.0774 9.9317 -8.6038 20 1 0.8698 11.6740 -7.2082 21 1 2.3091 9.9795 -8.1762 22 6 2.4790 3.6765 -3.8776 23 6 1.4469 2.5894 -3.5365 24 9 0.9917 1.9020 -4.6669 25 6 2.0243 1.6787 -2.4734 26 8 2.7217 0.7109 -2.6925 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8532 0.9571 1.0571 33 1 3.9995 0.9054 -0.7161 34 1 3.9281 2.4721 0.1262 35 1 1.3909 4.1850 -1.0974 36 1 -0.0385 3.2064 -0.6511 37 1 0.1631 5.4977 -2.5345 38 1 -0.2235 4.9267 -4.1814 39 1 2.9693 6.0062 -5.1605 40 1 1.5094 5.1994 -5.7820 41 1 0.0761 6.8456 -4.6778 42 1 1.4887 7.6049 -3.9056 43 1 -0.4782 10.4548 -5.1582 44 1 2.8147 3.5553 -4.9075 45 1 3.3306 3.6007 -3.2016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:40 Heat of formation + Delta-G solvation = -120.368931 kcal Electronic energy + Delta-G solvation = -28457.436456 eV Core-core repulsion = 24338.786280 eV Total energy + Delta-G solvation = -4118.650176 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.43080 -47.45236 -41.03630 -38.41689 -36.77042 -34.99812 -33.18239 -31.36331 -30.30175 -29.85676 -28.35153 -26.27776 -24.96032 -24.03306 -22.71449 -21.80380 -21.41243 -20.12078 -19.48396 -17.55874 -17.22134 -16.47646 -16.13724 -15.99505 -15.70693 -15.51676 -15.15762 -14.70284 -14.59834 -14.32796 -14.03473 -13.94914 -13.77887 -13.74840 -13.58006 -13.28378 -13.07045 -12.63267 -12.62371 -12.53903 -12.19207 -12.10929 -12.01194 -11.53278 -11.32458 -11.23525 -11.20191 -11.03512 -10.88207 -10.78274 -10.59849 -10.14726 -9.75253 -9.48041 -9.23731 -9.07758 -8.45389 -8.15220 -6.07964 -4.10641 2.10385 2.41549 3.28460 3.32512 3.35137 3.38218 3.58215 3.65209 3.88545 4.13477 4.34499 4.38589 4.45489 4.55690 4.68273 4.77481 4.96695 5.05276 5.11717 5.25423 5.28868 5.33098 5.39374 5.40965 5.50703 5.60627 5.61298 5.68232 5.70567 5.81508 5.93192 5.95563 6.00344 6.09049 6.17086 6.28792 6.65728 6.72052 7.05269 7.11540 7.57770 7.71904 7.75197 7.92807 8.31266 8.95290 9.53875 11.03333 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.025744 B = 0.003224 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.351224 B = 8683.761325 C = 8750.224308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.143 4.143 3 C 0.158 3.842 4 H 0.094 0.906 5 C -0.170 4.170 6 N -0.603 5.603 7 C 0.092 3.908 8 C 0.078 3.922 9 F -0.169 7.169 10 C 0.039 3.961 11 N -0.515 5.515 12 C 0.053 3.947 13 C 0.024 3.976 14 C -0.524 4.524 15 H 0.055 0.945 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.040 3.960 23 C 0.051 3.949 24 F -0.163 7.163 25 C 0.520 3.480 26 O -0.502 6.502 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.029 0.971 41 H 0.018 0.982 42 H 0.028 0.972 43 H 0.261 0.739 44 H 0.085 0.915 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.280 -15.788 13.147 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.181 4.181 3 C 0.056 3.944 4 H 0.112 0.888 5 C -0.228 4.228 6 N -0.338 5.338 7 C -0.031 4.031 8 C 0.058 3.942 9 F -0.149 7.149 10 C -0.089 4.089 11 N -0.239 5.239 12 C -0.073 4.073 13 C -0.014 4.014 14 C -0.563 4.563 15 H 0.074 0.926 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.089 4.089 23 C 0.027 3.973 24 F -0.143 7.143 25 C 0.304 3.696 26 O -0.376 6.376 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.131 0.869 36 H 0.117 0.883 37 H 0.127 0.873 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.036 0.964 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.795 -15.939 13.512 21.082 hybrid contribution -0.640 0.119 -1.628 1.753 sum 2.155 -15.820 11.884 19.904 Atomic orbital electron populations 1.21747 0.95368 1.01852 1.01867 1.21981 0.96564 0.95878 1.03651 1.21135 0.95699 0.93414 0.84104 0.88765 1.22202 0.94451 1.02952 1.03192 1.48197 1.50779 1.28760 1.06038 1.22812 0.96014 0.89456 0.94833 1.22818 0.79428 0.95672 0.96289 1.92921 1.39109 1.86669 1.96173 1.23131 0.91985 0.91038 1.02783 1.63482 1.12249 1.12350 1.35862 1.22720 1.02101 0.96030 0.86432 1.19183 0.94651 0.89603 0.97921 1.21127 1.29677 1.02032 1.03440 0.92627 1.24977 0.95092 0.97813 0.96309 1.69952 1.31290 1.20326 1.31559 0.86574 0.78614 0.79683 0.83026 1.20657 1.21167 1.19832 1.23130 0.95744 0.86131 1.03901 1.22994 0.96595 0.93364 0.84305 1.92946 1.89639 1.80784 1.50894 1.20426 0.80689 0.84420 0.84101 1.90716 1.37075 1.26449 1.83325 0.92681 0.92590 0.92714 0.90260 0.90584 0.91191 0.90931 0.91906 0.86945 0.88277 0.87324 0.90163 0.90825 0.95274 0.96354 0.95316 0.92898 0.89642 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.80 37.16 0.36 -0.95 16 2 C -0.14 -1.27 5.36 -26.73 -0.14 -1.41 16 3 C 0.16 1.36 2.86 -67.92 -0.19 1.17 16 4 H 0.09 0.61 8.07 -51.93 -0.42 0.19 16 5 C -0.17 -1.44 9.20 37.16 0.34 -1.10 16 6 N -0.60 -6.57 2.28 -164.92 -0.38 -6.95 16 7 C 0.09 0.92 6.47 -3.24 -0.02 0.90 16 8 C 0.08 1.05 1.92 -88.23 -0.17 0.88 16 9 F -0.17 -2.48 17.13 2.25 0.04 -2.44 16 10 C 0.04 0.59 4.69 -3.34 -0.02 0.57 16 11 N -0.52 -8.26 5.22 -233.45 -1.22 -9.48 16 12 C 0.05 1.04 4.55 -3.83 -0.02 1.02 16 13 C 0.02 0.57 4.60 -27.89 -0.13 0.44 16 14 C -0.52 -14.18 9.11 -34.44 -0.31 -14.50 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 C 0.04 0.57 6.21 -3.40 -0.02 0.55 16 23 C 0.05 0.75 1.79 -89.67 -0.16 0.59 16 24 F -0.16 -2.79 17.04 2.25 0.04 -2.76 16 25 C 0.52 7.33 6.18 -10.80 -0.07 7.26 16 26 O -0.50 -8.27 15.06 5.55 0.08 -8.19 16 27 H 0.05 0.59 7.75 -51.93 -0.40 0.18 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.92 6.63 -51.93 -0.34 0.58 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.79 6.79 -51.93 -0.35 0.44 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.11 1.03 7.71 -51.93 -0.40 0.63 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.11 1.51 7.96 -51.93 -0.41 1.10 16 38 H 0.08 1.37 6.84 -51.93 -0.36 1.02 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.03 0.57 8.09 -51.93 -0.42 0.15 16 41 H 0.02 0.46 6.73 -51.93 -0.35 0.11 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 44 H 0.09 1.25 7.50 -51.93 -0.39 0.86 16 45 H 0.10 1.28 7.61 -51.93 -0.40 0.89 16 LS Contribution 361.95 15.07 5.45 5.45 Total: -1.00 -30.71 361.95 -8.07 -38.79 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -7.16 Total: -2.47 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -0.64 Total: -3.01 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: -0.86 Total: -41.44 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.08 Total: -8.19 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.08 Total: -5.20 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.71 -8.07 -38.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.583 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds