Wall clock time and date at job start Tue Mar 31 2020 11:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.47217 * 179.97438 * 10 9 7 12 12 C 1.46853 * 110.99860 * 294.36323 * 11 10 9 13 13 C 1.53148 * 109.45013 * 173.65013 * 12 11 10 14 14 C 1.52546 * 109.31614 * 58.25952 * 13 12 11 15 15 C 1.54126 * 110.08131 * 181.89489 * 14 13 12 16 16 C 1.54590 * 101.65350 * 216.69588 * 15 14 13 17 17 N 1.46820 * 105.49504 * 24.98543 * 16 15 14 18 18 C 1.46494 * 124.36419 * 163.08090 * 17 16 15 19 19 C 1.53000 * 109.47393 * 89.99890 * 18 17 16 20 20 F 1.39905 * 109.46658 * 300.00122 * 19 18 17 21 21 F 1.39900 * 109.47415 * 59.99747 * 19 18 17 22 22 C 1.34574 * 111.27230 * 343.07766 * 17 16 15 23 23 O 1.21289 * 125.02753 * 180.72104 * 22 17 16 24 24 C 1.52540 * 110.49981 * 303.69587 * 14 13 12 25 25 C 1.46850 * 110.99890 * 170.00322 * 11 10 9 26 26 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 27 27 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 28 28 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 29 29 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 30 30 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 31 31 H 1.09007 * 109.47201 * 293.63980 * 12 11 10 32 32 H 1.08995 * 109.47537 * 53.65344 * 12 11 10 33 33 H 1.08998 * 109.49405 * 298.30882 * 13 12 11 34 34 H 1.08990 * 109.51879 * 178.23120 * 13 12 11 35 35 H 1.09000 * 110.99135 * 334.78734 * 15 14 13 36 36 H 1.08996 * 110.99225 * 98.60361 * 15 14 13 37 37 H 1.08998 * 110.24354 * 143.98869 * 16 15 14 38 38 H 1.08997 * 110.24334 * 265.89462 * 16 15 14 39 39 H 1.09007 * 109.47305 * 209.99808 * 18 17 16 40 40 H 1.09000 * 109.47285 * 329.99711 * 18 17 16 41 41 H 1.09001 * 109.47234 * 180.02562 * 19 18 17 42 42 H 1.08997 * 109.49589 * 296.34937 * 24 14 13 43 43 H 1.09000 * 109.49656 * 176.25182 * 24 14 13 44 44 H 1.09008 * 109.47019 * 306.34100 * 25 11 10 45 45 H 1.08998 * 109.47794 * 66.34743 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 7 1.5107 -4.9343 0.0228 12 6 0.7582 -5.1013 1.2728 13 6 -0.1155 -6.3556 1.1782 14 6 0.7698 -7.5680 0.9075 15 6 -0.0969 -8.8342 0.7619 16 6 0.7952 -9.9024 1.4347 17 7 1.6525 -9.1644 2.3707 18 6 2.4002 -9.7812 3.4692 19 6 3.7881 -10.1926 2.9739 20 9 3.6561 -11.1105 1.9263 21 9 4.4751 -9.0618 2.5192 22 6 1.6631 -7.8485 2.0894 23 8 2.2976 -7.0119 2.6965 24 6 1.5990 -7.3529 -0.3546 25 6 2.4168 -6.0662 -0.2102 26 1 -0.4850 0.8401 -0.0041 27 1 0.6241 -2.5528 0.9015 28 1 0.6247 -2.5609 -0.8785 29 1 2.8719 -3.6083 -0.8736 30 1 2.8719 -3.6004 0.9064 31 1 1.4546 -5.2054 2.1050 32 1 0.1254 -4.2290 1.4353 33 1 -0.8319 -6.2394 0.3650 34 1 -0.6507 -6.4981 2.1169 35 1 -1.0421 -8.7236 1.2935 36 1 -0.2669 -9.0724 -0.2881 37 1 0.1798 -10.6222 1.9744 38 1 1.4025 -10.4121 0.6868 39 1 2.5030 -9.0660 4.2854 40 1 1.8650 -10.6622 3.8234 41 1 4.3442 -10.6519 3.7911 42 1 0.9358 -7.2678 -1.2154 43 1 2.2725 -8.1982 -0.4958 44 1 2.9866 -5.8935 -1.1233 45 1 3.1013 -6.1633 0.6325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:20 Heat of formation + Delta-G solvation = -137.201903 kcal Electronic energy + Delta-G solvation = -28111.698545 eV Core-core repulsion = 23992.318437 eV Total energy + Delta-G solvation = -4119.380109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.17275 -47.18412 -41.26787 -37.77749 -36.59612 -34.66551 -32.91158 -31.24226 -30.68181 -29.12877 -28.29120 -25.78661 -24.08386 -23.60105 -22.90558 -21.55778 -20.92635 -19.81343 -18.72285 -18.01749 -17.51069 -17.19639 -16.46398 -16.11890 -15.78824 -15.26747 -14.73738 -14.60007 -14.39681 -14.25014 -14.04763 -13.79470 -13.55121 -13.44510 -13.34746 -12.93520 -12.78944 -12.65592 -12.59435 -12.30202 -12.03945 -11.88418 -11.77453 -11.62375 -11.47593 -10.97597 -10.86513 -10.83997 -10.48241 -10.27852 -10.09693 -9.78000 -9.40571 -9.19453 -9.02227 -8.98918 -8.24175 -7.45272 -5.91626 -3.92867 2.49905 2.56945 3.36851 3.43811 3.48821 3.49531 3.89583 3.95957 4.24209 4.29955 4.42920 4.49684 4.55440 4.70149 4.79025 4.89857 5.01209 5.06666 5.17214 5.24367 5.44310 5.47197 5.56660 5.66963 5.74666 5.81345 5.87510 6.01214 6.06534 6.16604 6.21528 6.33839 6.38799 6.58255 6.66193 6.72471 6.89121 7.12104 7.66340 7.75974 7.93284 8.03961 8.09996 8.19924 8.54698 9.14721 9.70090 11.19900 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.024325 B = 0.003044 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.785405 B = 9195.351221 C = 9710.799557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.029 3.971 10 C 0.065 3.935 11 N -0.535 5.535 12 C 0.042 3.958 13 C -0.091 4.091 14 C -0.088 4.088 15 C -0.126 4.126 16 C 0.105 3.895 17 N -0.627 5.627 18 C 0.079 3.921 19 C 0.242 3.758 20 F -0.206 7.206 21 F -0.194 7.194 22 C 0.530 3.470 23 O -0.501 6.501 24 C -0.090 4.090 25 C 0.049 3.951 26 H 0.259 0.741 27 H 0.017 0.983 28 H 0.024 0.976 29 H 0.058 0.942 30 H 0.019 0.981 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.877 -27.674 5.608 28.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.062 4.062 11 N -0.259 5.259 12 C -0.086 4.086 13 C -0.129 4.129 14 C -0.091 4.091 15 C -0.163 4.163 16 C -0.017 4.017 17 N -0.363 5.363 18 C -0.045 4.045 19 C 0.186 3.814 20 F -0.187 7.187 21 F -0.176 7.176 22 C 0.318 3.682 23 O -0.374 6.374 24 C -0.128 4.128 25 C -0.079 4.079 26 H 0.068 0.932 27 H 0.035 0.965 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.795 -27.102 5.582 27.682 hybrid contribution 1.145 0.735 0.606 1.490 sum 1.941 -26.367 6.188 27.153 Atomic orbital electron populations 1.69988 1.05981 1.26299 1.51114 1.24992 0.94826 0.99107 0.95461 0.86555 0.80149 0.83920 0.77488 1.19789 1.21048 1.21092 1.21269 0.93049 0.91144 1.50244 0.92798 1.19094 0.93996 0.90115 0.97660 1.22275 0.96686 0.88415 0.98822 1.62028 1.27070 1.02193 1.34657 1.22265 0.97340 0.97210 0.91740 1.21432 0.97145 0.92559 1.01756 1.21064 0.96137 0.96961 0.94947 1.22728 0.98025 0.93078 1.02503 1.22161 0.92479 0.94903 0.92199 1.48229 1.48354 1.08502 1.31192 1.22475 0.90077 1.01152 0.90790 1.22537 0.94723 0.77444 0.86659 1.92975 1.96799 1.67001 1.61956 1.93065 1.81062 1.52667 1.90769 1.20851 0.81357 0.81335 0.84631 1.90719 1.43731 1.48645 1.54282 1.21413 0.98453 0.97635 0.95328 1.22076 0.94391 0.90776 1.00669 0.93172 0.96486 0.95799 0.92364 0.96279 0.92882 0.89763 0.90075 0.91957 0.89698 0.88774 0.90461 0.90853 0.87073 0.87457 0.86721 0.89769 0.91999 0.91168 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.59 13.29 55.43 0.74 -26.86 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.52 -15.32 9.11 -34.44 -0.31 -15.64 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.78 4.90 -27.89 -0.14 0.65 16 10 C 0.06 1.50 4.90 -3.82 -0.02 1.48 16 11 N -0.53 -10.58 4.64 -234.52 -1.09 -11.67 16 12 C 0.04 0.80 5.07 -3.77 -0.02 0.78 16 13 C -0.09 -1.30 4.77 -26.89 -0.13 -1.42 16 14 C -0.09 -1.08 0.55 -155.50 -0.09 -1.16 16 15 C -0.13 -1.01 6.21 -25.31 -0.16 -1.16 16 16 C 0.11 0.77 7.23 -3.03 -0.02 0.74 16 17 N -0.63 -6.29 2.81 -172.47 -0.48 -6.78 16 18 C 0.08 0.58 6.18 -4.05 -0.02 0.55 16 19 C 0.24 1.92 5.60 37.16 0.21 2.13 16 20 F -0.21 -1.90 17.11 2.25 0.04 -1.86 16 21 F -0.19 -2.50 16.98 2.25 0.04 -2.46 16 22 C 0.53 7.36 6.03 -11.04 -0.07 7.29 16 23 O -0.50 -8.99 13.85 5.55 0.08 -8.91 16 24 C -0.09 -1.18 4.77 -26.89 -0.13 -1.31 16 25 C 0.05 0.84 5.24 -3.78 -0.02 0.82 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.02 0.49 6.41 -51.93 -0.33 0.15 16 28 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.32 7.98 -51.93 -0.41 0.90 16 30 H 0.02 0.46 8.12 -51.93 -0.42 0.03 16 31 H 0.05 1.10 5.78 -51.92 -0.30 0.80 16 32 H 0.08 1.76 6.19 -51.93 -0.32 1.44 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.60 7.89 -51.93 -0.41 0.19 16 36 H 0.09 0.62 7.87 -51.93 -0.41 0.21 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.53 8.12 -51.93 -0.42 0.10 16 39 H 0.11 0.86 7.94 -51.92 -0.41 0.45 16 40 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.07 1.15 8.01 -51.92 -0.42 0.73 16 45 H 0.04 0.69 6.68 -51.93 -0.35 0.34 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -35.72 357.73 -8.45 -44.17 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -7.13 Total: -3.70 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -1.01 Total: -4.66 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.84 Total: -45.31 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.08 Total: -4.32 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.72 -8.45 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.029 kcal (2) G-P(sol) polarization free energy of solvation -35.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds