Wall clock time and date at job start Tue Mar 31 2020 11:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00151 * 2 1 4 4 H 1.48499 * 109.46948 * 90.00490 * 3 2 1 5 5 H 1.48501 * 109.46859 * 210.00153 * 3 2 1 6 6 H 1.48495 * 109.47294 * 330.00123 * 3 2 1 7 7 C 1.37879 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00261 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99893 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47336 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47028 * 180.02562 * 10 9 7 12 12 N 1.46905 * 109.47044 * 174.86263 * 11 10 9 13 13 C 1.48003 * 110.99991 * 175.71028 * 12 11 10 14 14 C 1.54284 * 107.02936 * 214.40328 * 13 12 11 15 15 C 1.53316 * 104.79447 * 2.00451 * 14 13 12 16 16 C 1.53365 * 111.49738 * 141.00088 * 15 14 13 17 17 C 1.54757 * 101.43910 * 98.52913 * 16 15 14 18 18 N 1.46912 * 105.53593 * 24.30037 * 17 16 15 19 19 C 1.46500 * 124.37656 * 163.22668 * 18 17 16 20 20 C 1.53004 * 109.47498 * 89.99905 * 19 18 17 21 21 F 1.39900 * 109.46862 * 300.00120 * 20 19 18 22 22 F 1.39896 * 109.46881 * 59.99435 * 20 19 18 23 23 C 1.34843 * 111.24526 * 343.21950 * 18 17 16 24 24 O 1.21284 * 125.18273 * 181.19595 * 23 18 17 25 25 C 1.48779 * 110.99569 * 58.08480 * 12 11 10 26 26 H 0.97000 * 120.00294 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47395 * 300.00420 * 9 7 2 28 28 H 1.09014 * 109.46903 * 60.00032 * 9 7 2 29 29 H 1.08999 * 109.46992 * 300.00654 * 10 9 7 30 30 H 1.09008 * 109.46376 * 60.00211 * 10 9 7 31 31 H 1.09005 * 109.47430 * 294.86504 * 11 10 9 32 32 H 1.08997 * 109.47549 * 54.86680 * 11 10 9 33 33 H 1.08998 * 109.92694 * 333.74750 * 13 12 11 34 34 H 1.09008 * 109.92295 * 95.06287 * 13 12 11 35 35 H 1.08991 * 110.37861 * 120.83269 * 14 13 12 36 36 H 1.09002 * 110.37731 * 243.17972 * 14 13 12 37 37 H 1.08993 * 111.03007 * 216.56878 * 16 15 14 38 38 H 1.08996 * 111.02769 * 340.48998 * 16 15 14 39 39 H 1.09000 * 110.23479 * 143.31125 * 17 16 15 40 40 H 1.08995 * 110.23759 * 265.28395 * 17 16 15 41 41 H 1.09003 * 109.46869 * 209.99385 * 19 18 17 42 42 H 1.08995 * 109.47358 * 329.99675 * 19 18 17 43 43 H 1.08995 * 109.47327 * 179.97438 * 20 19 18 44 44 H 1.09000 * 110.68896 * 276.83217 * 25 12 11 45 45 H 1.09004 * 110.68438 * 40.01066 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4467 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0018 11 6 1.4801 -4.9871 -0.0025 12 7 2.4298 -6.1009 -0.1277 13 6 1.7350 -7.4039 -0.0291 14 6 2.6972 -8.3761 0.6846 15 6 3.9318 -7.5306 1.0182 16 6 4.4996 -7.8849 2.3982 17 6 5.6562 -8.8403 2.0181 18 7 6.0219 -8.4867 0.6399 19 6 7.2769 -8.8750 -0.0085 20 6 7.0931 -10.2223 -0.7100 21 9 6.7346 -11.1931 0.2314 22 9 6.0848 -10.1124 -1.6736 23 6 5.0531 -7.7585 0.0488 24 8 5.0837 -7.3506 -1.0930 25 6 3.4236 -6.0810 0.9792 26 1 -0.4850 -0.8400 0.0004 27 1 0.6246 -2.5571 0.8896 28 1 0.6239 -2.5567 -0.8904 29 1 2.8712 -3.6040 -0.8922 30 1 2.8725 -3.6048 0.8878 31 1 0.9246 -5.0864 0.9301 32 1 0.7859 -5.0054 -0.8426 33 1 0.8196 -7.2938 0.5522 34 1 1.5022 -7.7772 -1.0265 35 1 2.2416 -8.7590 1.5977 36 1 2.9679 -9.1976 0.0213 37 1 4.8764 -6.9971 2.9058 38 1 3.7546 -8.3958 3.0081 39 1 6.5053 -8.6881 2.6843 40 1 5.3204 -9.8762 2.0649 41 1 7.5562 -8.1186 -0.7420 42 1 8.0625 -8.9606 0.7423 43 1 8.0267 -10.5110 -1.1927 44 1 4.2385 -5.3934 0.7529 45 1 2.9449 -5.8154 1.9218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274043048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:54 Heat of formation + Delta-G solvation = -139.582589 kcal Electronic energy + Delta-G solvation = -27453.926884 eV Core-core repulsion = 23334.443541 eV Total energy + Delta-G solvation = -4119.483343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.21584 -47.22709 -41.25567 -38.16938 -36.52333 -34.77658 -33.44193 -31.81288 -29.73508 -29.17891 -28.26180 -25.89440 -24.48742 -23.60371 -22.66460 -21.45090 -20.91902 -20.13933 -19.09184 -18.03589 -17.58484 -17.22605 -16.76265 -16.37108 -16.00603 -15.40738 -15.22633 -14.95607 -14.28828 -14.17333 -14.06243 -13.70946 -13.63825 -13.59037 -13.29448 -13.08935 -12.87498 -12.69431 -12.58778 -12.52201 -12.50656 -12.05360 -11.68578 -11.61500 -11.38390 -11.18331 -10.93810 -10.88135 -10.65919 -10.44699 -10.07856 -9.75277 -9.67930 -9.64859 -9.04197 -8.46738 -8.25954 -8.09340 -6.29965 -3.97945 2.46090 2.52671 3.46376 3.46837 3.51653 3.67403 3.85284 3.86911 4.07595 4.13027 4.33122 4.36703 4.42236 4.59394 4.64370 4.84142 4.89340 4.94270 5.05496 5.12198 5.17907 5.38148 5.42750 5.47346 5.56891 5.62974 5.65596 5.71413 5.79583 5.80373 6.02418 6.08469 6.17129 6.26138 6.60635 6.72384 6.78442 6.99212 7.18311 7.35486 7.50530 7.64283 8.08913 8.30707 8.54255 8.95997 9.74158 11.10911 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022503 B = 0.002696 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.954596 B =10384.292698 C =10756.308648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 1.071 2.929 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.598 4.598 8 H 0.048 0.952 9 C 0.009 3.991 10 C -0.099 4.099 11 C 0.048 3.952 12 N -0.507 5.507 13 C 0.037 3.963 14 C -0.104 4.104 15 C -0.101 4.101 16 C -0.123 4.123 17 C 0.107 3.893 18 N -0.631 5.631 19 C 0.080 3.920 20 C 0.242 3.758 21 F -0.206 7.206 22 F -0.195 7.195 23 C 0.538 3.462 24 O -0.485 6.485 25 C 0.065 3.935 26 H 0.268 0.732 27 H 0.004 0.996 28 H 0.007 0.993 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.085 0.915 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.802 -25.229 5.998 29.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.191 4.191 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.637 4.637 8 H 0.067 0.933 9 C -0.028 4.028 10 C -0.137 4.137 11 C -0.080 4.080 12 N -0.230 5.230 13 C -0.092 4.092 14 C -0.142 4.142 15 C -0.105 4.105 16 C -0.161 4.161 17 C -0.016 4.016 18 N -0.367 5.367 19 C -0.044 4.044 20 C 0.186 3.814 21 F -0.188 7.188 22 F -0.177 7.177 23 C 0.325 3.675 24 O -0.355 6.355 25 C -0.064 4.064 26 H 0.079 0.921 27 H 0.022 0.978 28 H 0.025 0.975 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.133 0.867 44 H 0.104 0.896 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.883 -23.313 4.796 28.072 hybrid contribution -0.237 -1.968 0.842 2.154 sum 14.646 -25.282 5.638 29.757 Atomic orbital electron populations 1.70747 1.06887 1.30566 1.47090 1.25856 0.96583 1.02729 0.93903 0.83516 0.74727 0.75122 0.76648 1.21542 1.21468 1.21011 1.22092 0.94318 0.92043 1.55216 0.93340 1.19201 0.94649 0.93211 0.95765 1.21519 0.98887 0.92322 1.00965 1.22490 0.94353 0.91401 0.99747 1.64909 1.14210 1.01541 1.42379 1.22924 0.95592 0.90092 1.00545 1.22207 0.93287 0.97767 1.00952 1.21417 0.95222 0.98840 0.94982 1.22605 0.97642 1.00172 0.95652 1.22169 0.98323 0.99224 0.81864 1.48307 1.18111 1.55235 1.15093 1.22471 0.87469 0.95023 0.99413 1.22554 0.89585 0.88508 0.80720 1.92970 1.93653 1.65595 1.66567 1.93055 1.64162 1.96438 1.64007 1.20232 0.82957 0.76859 0.87465 1.90781 1.78117 1.49570 1.17044 1.22911 0.96665 0.92920 0.93867 0.92132 0.97795 0.97453 0.92239 0.93559 0.95380 0.90971 0.93606 0.90345 0.90277 0.90897 0.89346 0.88820 0.90287 0.90859 0.86975 0.87401 0.86657 0.89621 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.95 13.65 55.43 0.76 -28.19 16 2 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 3 Si 1.07 26.17 29.90 -169.99 -5.08 21.09 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.60 -17.80 9.11 -34.44 -0.31 -18.12 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.01 0.25 4.28 -27.88 -0.12 0.13 16 10 C -0.10 -2.20 4.84 -26.73 -0.13 -2.33 16 11 C 0.05 0.89 4.84 -3.82 -0.02 0.87 16 12 N -0.51 -8.48 5.36 -230.79 -1.24 -9.72 16 13 C 0.04 0.50 6.73 -2.54 -0.02 0.48 16 14 C -0.10 -1.15 6.16 -25.90 -0.16 -1.31 16 15 C -0.10 -1.17 0.73 -155.32 -0.11 -1.28 16 16 C -0.12 -0.93 6.26 -25.62 -0.16 -1.09 16 17 C 0.11 0.73 7.25 -2.89 -0.02 0.71 16 18 N -0.63 -6.13 2.82 -172.55 -0.49 -6.61 16 19 C 0.08 0.56 6.18 -4.04 -0.02 0.54 16 20 C 0.24 1.78 5.60 37.16 0.21 1.99 16 21 F -0.21 -1.77 17.11 2.25 0.04 -1.73 16 22 F -0.20 -2.35 16.98 2.25 0.04 -2.31 16 23 C 0.54 7.33 6.38 -11.31 -0.07 7.26 16 24 O -0.48 -8.76 17.50 5.55 0.10 -8.66 16 25 C 0.06 0.94 4.10 -2.44 -0.01 0.93 16 26 H 0.27 8.44 7.22 -40.82 -0.29 8.14 16 27 H 0.00 0.10 8.01 -51.93 -0.42 -0.31 16 28 H 0.01 0.20 8.01 -51.92 -0.42 -0.21 16 29 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.05 1.00 7.21 -51.92 -0.37 0.63 16 31 H 0.03 0.50 7.98 -51.93 -0.41 0.09 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.05 0.58 7.67 -51.93 -0.40 0.18 16 34 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 35 H 0.08 0.67 7.44 -51.93 -0.39 0.29 16 36 H 0.07 0.84 7.85 -51.93 -0.41 0.44 16 37 H 0.09 0.64 7.95 -51.93 -0.41 0.22 16 38 H 0.09 0.54 7.45 -51.93 -0.39 0.16 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 41 H 0.11 0.85 7.96 -51.93 -0.41 0.44 16 42 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 1.39 7.71 -51.93 -0.40 0.99 16 45 H 0.06 0.76 7.92 -51.93 -0.41 0.35 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -37.09 367.64 -8.68 -45.76 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -7.29 Total: -4.21 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -1.05 Total: -10.95 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -0.97 Total: -44.53 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.10 Total: -8.66 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.08 Total: -4.05 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.08 Total: 21.09 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.09 -8.68 -45.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274043048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.821 kcal (2) G-P(sol) polarization free energy of solvation -37.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds