Wall clock time and date at job start Tue Mar 31 2020 11:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46808 * 2 1 4 4 C 1.50695 * 109.47243 * 119.99945 * 2 1 3 5 5 C 1.38233 * 120.00166 * 120.00413 * 4 2 1 6 6 C 1.38231 * 120.00118 * 179.97438 * 5 4 2 7 7 C 1.38234 * 120.00138 * 0.02562 * 6 5 4 8 8 C 1.50708 * 120.00064 * 179.97438 * 7 6 5 9 9 C 1.50696 * 112.84704 * 309.67192 * 8 7 6 10 10 O 1.20833 * 119.99655 * 230.32683 * 9 8 7 11 11 O 1.34222 * 120.00432 * 50.60950 * 9 8 7 12 12 C 1.45201 * 117.00137 * 179.71953 * 11 9 8 13 13 C 1.53006 * 109.46884 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.46788 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00388 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99872 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99802 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99987 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47023 * 60.00295 * 18 16 14 20 20 H 1.48498 * 109.47028 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47247 * 300.00257 * 18 16 14 22 22 C 1.53783 * 113.60979 * 80.86819 * 8 7 6 23 23 C 1.54053 * 86.98274 * 140.02178 * 22 8 7 24 24 C 1.53778 * 113.61163 * 178.47313 * 8 7 6 25 25 C 1.38228 * 119.99855 * 0.26240 * 7 6 5 26 26 C 1.38231 * 120.00091 * 359.46699 * 25 7 6 27 27 H 1.09000 * 109.47500 * 299.99885 * 1 2 3 28 28 H 1.08998 * 109.47374 * 60.00112 * 1 2 3 29 29 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47008 * 240.00308 * 2 1 3 31 31 H 1.09004 * 109.46472 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47276 * 299.99761 * 3 2 1 33 33 H 1.09000 * 109.47085 * 60.00355 * 3 2 1 34 34 H 1.07997 * 119.99975 * 359.97123 * 5 4 2 35 35 H 1.08004 * 119.99649 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.47380 * 299.99656 * 12 11 9 37 37 H 1.08997 * 109.47403 * 60.00337 * 12 11 9 38 38 H 1.08997 * 109.47361 * 299.99753 * 13 12 11 39 39 H 1.08997 * 109.47194 * 60.00322 * 13 12 11 40 40 H 0.97000 * 119.99313 * 180.02562 * 17 16 14 41 41 H 1.08998 * 113.61072 * 254.61058 * 22 8 7 42 42 H 1.08990 * 113.61287 * 25.51508 * 22 8 7 43 43 H 1.09000 * 113.61497 * 220.02119 * 23 22 8 44 44 H 1.08995 * 113.69515 * 89.12083 * 23 22 8 45 45 H 1.08999 * 113.61507 * 334.48789 * 24 8 7 46 46 H 1.09005 * 113.61119 * 105.31036 * 24 8 7 47 47 H 1.08005 * 120.00135 * 179.72212 * 25 7 6 48 48 H 1.08001 * 120.00428 * 180.29978 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8271 -1.8342 1.1036 6 6 3.2883 -2.4855 2.2323 7 6 2.9544 -2.0133 3.4878 8 6 3.4568 -2.7237 4.7183 9 6 3.1970 -4.2077 4.6842 10 8 2.6710 -4.7508 5.6267 11 8 3.5552 -4.9273 3.6092 12 6 3.2800 -6.3524 3.6483 13 6 3.7541 -6.9993 2.3453 14 6 3.4678 -8.4783 2.3856 15 1 2.9955 -8.9135 3.2538 16 6 3.8090 -9.2760 1.3140 17 7 4.3847 -8.7461 0.2568 18 14 3.4549 -11.1095 1.3642 19 1 1.9946 -11.3274 1.5230 20 1 3.9149 -11.7373 0.0995 21 1 4.1742 -11.7213 2.5103 22 6 4.9034 -2.3598 5.0921 23 6 4.4393 -2.3663 6.5611 24 6 3.0287 -2.0534 6.0345 25 6 2.1547 -0.8930 3.6146 26 6 1.6980 -0.2384 2.4860 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.0877 -2.2034 0.1228 35 1 3.9090 -3.3638 2.1331 36 1 3.8072 -6.8014 4.4900 37 1 2.2080 -6.5125 3.7639 38 1 3.2265 -6.5504 1.5038 39 1 4.8260 -6.8393 2.2292 40 1 4.6244 -9.3073 -0.4972 41 1 5.6250 -3.1423 4.8573 42 1 5.2123 -1.3771 4.7361 43 1 4.8703 -1.5631 7.1587 44 1 4.5196 -3.3413 7.0415 45 1 2.8260 -0.9870 5.9356 46 1 2.2368 -2.5880 6.5593 47 1 1.8900 -0.5266 4.5956 48 1 1.0772 0.6398 2.5851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320976830.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:59 Heat of formation + Delta-G solvation = -66.430917 kcal Electronic energy + Delta-G solvation = -26494.593667 eV Core-core repulsion = 22900.219198 eV Total energy + Delta-G solvation = -3594.374470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.11193 -39.36291 -38.06477 -35.99701 -35.14341 -33.34992 -30.94269 -30.60082 -30.01966 -27.30927 -26.55852 -25.91308 -24.89461 -23.22223 -22.24522 -21.75794 -20.83463 -20.04600 -19.00715 -17.53488 -16.67157 -16.16869 -16.00220 -15.92903 -15.34171 -14.97472 -14.72071 -14.47426 -14.03175 -13.95710 -13.70815 -13.34311 -13.26698 -13.06385 -12.68656 -12.51553 -12.40417 -12.31746 -12.24883 -11.88354 -11.38656 -11.30771 -11.24588 -11.13805 -11.01651 -10.94812 -10.74578 -10.72234 -10.64071 -10.44942 -10.34888 -10.15515 -9.64711 -9.60779 -9.31522 -8.81406 -8.45488 -8.44476 -6.10936 -4.15223 1.31775 1.50923 2.53980 3.09775 3.29656 3.33669 3.37420 3.82978 4.26565 4.38390 4.49629 4.52070 4.65186 4.68332 4.72499 4.99721 5.04381 5.08748 5.15115 5.25639 5.32836 5.41957 5.43756 5.49323 5.56586 5.61027 5.63920 5.64459 5.79278 5.82260 5.82513 5.92732 5.95110 6.04414 6.07090 6.08419 6.09692 6.10069 6.18995 6.25961 6.50745 6.63050 6.69515 6.72172 6.97686 7.09578 7.54626 7.61509 7.85980 8.18795 8.26641 8.89834 9.49101 11.00430 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.010765 B = 0.003586 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.371018 B = 7806.329656 C = 9820.829285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.142 4.142 4 C -0.078 4.078 5 C -0.115 4.115 6 C -0.091 4.091 7 C -0.078 4.078 8 C -0.043 4.043 9 C 0.484 3.516 10 O -0.512 6.512 11 O -0.350 6.350 12 C 0.074 3.926 13 C 0.027 3.973 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.114 4.114 23 C -0.142 4.142 24 C -0.120 4.120 25 C -0.112 4.112 26 C -0.120 4.120 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.124 0.876 35 H 0.141 0.859 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.264 0.736 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.124 0.876 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.834 22.040 4.268 22.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 C -0.200 4.200 4 C -0.078 4.078 5 C -0.133 4.133 6 C -0.109 4.109 7 C -0.078 4.078 8 C -0.044 4.044 9 C 0.326 3.674 10 O -0.400 6.400 11 O -0.266 6.266 12 C 0.001 3.999 13 C -0.010 4.010 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.152 4.152 23 C -0.180 4.180 24 C -0.157 4.157 25 C -0.130 4.130 26 C -0.138 4.138 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.142 0.858 35 H 0.158 0.842 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.115 0.885 46 H 0.103 0.897 47 H 0.142 0.858 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.914 21.777 4.338 22.395 hybrid contribution -0.280 -1.279 -0.041 1.310 sum -3.194 20.497 4.298 21.185 Atomic orbital electron populations 1.21855 0.94415 1.02208 1.01651 1.20134 0.95922 0.95927 0.95670 1.21846 1.01244 0.95192 1.01678 1.19879 0.97602 0.95735 0.94555 1.21116 0.98015 0.95247 0.98902 1.21382 0.98712 0.99439 0.91356 1.19283 0.99199 0.96226 0.93092 1.20509 1.00060 0.88765 0.95070 1.22606 0.74962 0.89070 0.80721 1.90611 1.40153 1.72525 1.36760 1.86506 1.74484 1.24980 1.40617 1.23669 1.00414 0.73159 1.02645 1.19148 0.97687 0.94470 0.89729 1.20941 1.40943 0.91936 1.02734 0.92366 1.24970 0.94834 0.99029 0.95216 1.69963 1.40840 1.35963 1.06018 0.86543 0.78832 0.84599 0.77396 1.20065 1.21098 1.20074 1.23005 0.93244 1.02948 0.95985 1.22939 0.96152 1.02703 0.96169 1.23014 0.98695 1.00702 0.93325 1.21021 0.97679 0.95584 0.98708 1.20832 1.00969 1.00211 0.91821 0.92572 0.92531 0.92357 0.90373 0.92528 0.92550 0.92580 0.85847 0.84163 0.92362 0.92400 0.95367 0.95392 0.92670 0.90260 0.88519 0.90721 0.89602 0.88520 0.89656 0.85801 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.01 37.16 0.33 -0.91 16 2 C -0.06 -0.54 3.09 -91.77 -0.28 -0.83 16 3 C -0.14 -1.12 9.01 37.16 0.33 -0.78 16 4 C -0.08 -0.90 4.78 -104.63 -0.50 -1.40 16 5 C -0.11 -1.53 9.67 -39.59 -0.38 -1.91 16 6 C -0.09 -1.35 9.02 -39.59 -0.36 -1.71 16 7 C -0.08 -1.07 5.01 -104.62 -0.52 -1.59 16 8 C -0.04 -0.60 1.13 -156.00 -0.18 -0.77 16 9 C 0.48 8.80 6.70 36.00 0.24 9.05 16 10 O -0.51 -10.37 15.58 -18.76 -0.29 -10.66 16 11 O -0.35 -7.05 7.79 -39.24 -0.31 -7.35 16 12 C 0.07 1.66 5.40 37.16 0.20 1.86 16 13 C 0.03 0.70 5.35 -27.88 -0.15 0.55 16 14 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 18 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.11 -1.33 7.23 -25.77 -0.19 -1.51 16 23 C -0.14 -1.53 7.76 -25.77 -0.20 -1.73 16 24 C -0.12 -1.37 6.44 -25.92 -0.17 -1.54 16 25 C -0.11 -1.31 9.19 -39.59 -0.36 -1.67 16 26 C -0.12 -1.32 8.71 -39.58 -0.34 -1.66 16 27 H 0.06 0.46 7.39 -51.93 -0.38 0.07 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.73 7.88 -51.93 -0.41 0.32 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 34 H 0.12 1.52 7.95 -52.49 -0.42 1.11 16 35 H 0.14 2.31 6.28 -52.48 -0.33 1.98 16 36 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 37 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 42 H 0.10 0.95 8.09 -51.93 -0.42 0.53 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.10 0.86 6.02 -51.93 -0.31 0.55 16 46 H 0.08 1.08 7.42 -51.93 -0.39 0.70 16 47 H 0.12 1.18 5.80 -52.48 -0.30 0.88 16 48 H 0.12 1.04 7.10 -52.49 -0.37 0.67 16 LS Contribution 386.44 15.07 5.82 5.82 Total: -1.00 -30.89 386.44 -9.90 -40.80 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -7.91 Total: 0.58 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -2.93 Total: -20.10 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.74 Total: -25.52 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.60 Total: -18.01 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.89 -9.90 -40.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320976830.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.636 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds