Wall clock time and date at job start Tue Mar 31 2020 11:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46808 * 2 1 4 4 C 1.50695 * 109.47243 * 119.99945 * 2 1 3 5 5 C 1.38233 * 120.00166 * 120.00413 * 4 2 1 6 6 C 1.38231 * 120.00118 * 179.97438 * 5 4 2 7 7 C 1.38234 * 120.00138 * 0.02562 * 6 5 4 8 8 C 1.50708 * 120.00064 * 179.97438 * 7 6 5 9 9 C 1.50696 * 112.84704 * 309.67192 * 8 7 6 10 10 O 1.20833 * 119.99655 * 230.32683 * 9 8 7 11 11 O 1.34222 * 120.00432 * 50.60950 * 9 8 7 12 12 C 1.45201 * 117.00137 * 179.71953 * 11 9 8 13 13 C 1.53006 * 109.46884 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.46788 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00388 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99872 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99802 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99987 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47023 * 60.00295 * 18 16 14 20 20 H 1.48498 * 109.47028 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47247 * 300.00257 * 18 16 14 22 22 C 1.53783 * 113.60979 * 80.86819 * 8 7 6 23 23 C 1.54053 * 86.98274 * 140.02178 * 22 8 7 24 24 C 1.53778 * 113.61163 * 178.47313 * 8 7 6 25 25 C 1.38228 * 119.99855 * 0.26240 * 7 6 5 26 26 C 1.38231 * 120.00091 * 359.46699 * 25 7 6 27 27 H 1.09000 * 109.47500 * 299.99885 * 1 2 3 28 28 H 1.08998 * 109.47374 * 60.00112 * 1 2 3 29 29 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47008 * 240.00308 * 2 1 3 31 31 H 1.09004 * 109.46472 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47276 * 299.99761 * 3 2 1 33 33 H 1.09000 * 109.47085 * 60.00355 * 3 2 1 34 34 H 1.07997 * 119.99975 * 359.97123 * 5 4 2 35 35 H 1.08004 * 119.99649 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.47380 * 299.99656 * 12 11 9 37 37 H 1.08997 * 109.47403 * 60.00337 * 12 11 9 38 38 H 1.08997 * 109.47361 * 299.99753 * 13 12 11 39 39 H 1.08997 * 109.47194 * 60.00322 * 13 12 11 40 40 H 0.97000 * 119.99313 * 180.02562 * 17 16 14 41 41 H 1.08998 * 113.61072 * 254.61058 * 22 8 7 42 42 H 1.08990 * 113.61287 * 25.51508 * 22 8 7 43 43 H 1.09000 * 113.61497 * 220.02119 * 23 22 8 44 44 H 1.08995 * 113.69515 * 89.12083 * 23 22 8 45 45 H 1.08999 * 113.61507 * 334.48789 * 24 8 7 46 46 H 1.09005 * 113.61119 * 105.31036 * 24 8 7 47 47 H 1.08005 * 120.00135 * 179.72212 * 25 7 6 48 48 H 1.08001 * 120.00428 * 180.29978 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8271 -1.8342 1.1036 6 6 3.2883 -2.4855 2.2323 7 6 2.9544 -2.0133 3.4878 8 6 3.4568 -2.7237 4.7183 9 6 3.1970 -4.2077 4.6842 10 8 2.6710 -4.7508 5.6267 11 8 3.5552 -4.9273 3.6092 12 6 3.2800 -6.3524 3.6483 13 6 3.7541 -6.9993 2.3453 14 6 3.4678 -8.4783 2.3856 15 1 2.9955 -8.9135 3.2538 16 6 3.8090 -9.2760 1.3140 17 7 4.3847 -8.7461 0.2568 18 14 3.4549 -11.1095 1.3642 19 1 1.9946 -11.3274 1.5230 20 1 3.9149 -11.7373 0.0995 21 1 4.1742 -11.7213 2.5103 22 6 4.9034 -2.3598 5.0921 23 6 4.4393 -2.3663 6.5611 24 6 3.0287 -2.0534 6.0345 25 6 2.1547 -0.8930 3.6146 26 6 1.6980 -0.2384 2.4860 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.0877 -2.2034 0.1228 35 1 3.9090 -3.3638 2.1331 36 1 3.8072 -6.8014 4.4900 37 1 2.2080 -6.5125 3.7639 38 1 3.2265 -6.5504 1.5038 39 1 4.8260 -6.8393 2.2292 40 1 4.6244 -9.3073 -0.4972 41 1 5.6250 -3.1423 4.8573 42 1 5.2123 -1.3771 4.7361 43 1 4.8703 -1.5631 7.1587 44 1 4.5196 -3.3413 7.0415 45 1 2.8260 -0.9870 5.9356 46 1 2.2368 -2.5880 6.5593 47 1 1.8900 -0.5266 4.5956 48 1 1.0772 0.6398 2.5851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320976830.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:57 Heat of formation + Delta-G solvation = -79.581049 kcal Electronic energy + Delta-G solvation = -26495.163900 eV Core-core repulsion = 22900.219198 eV Total energy + Delta-G solvation = -3594.944702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.35733 -40.52354 -39.22272 -37.54084 -36.01004 -35.48226 -32.47290 -31.87547 -31.19277 -27.94173 -27.89903 -26.84189 -26.65988 -24.37739 -23.20746 -23.12597 -22.58465 -20.90883 -20.30698 -18.90158 -18.35748 -17.79154 -17.48027 -17.12562 -16.55741 -16.40682 -15.92069 -15.68340 -15.07589 -15.00978 -14.82892 -14.50093 -14.41576 -14.37765 -14.15729 -13.68724 -13.49385 -13.34415 -13.17622 -13.02876 -13.01905 -12.75828 -12.61953 -12.59119 -12.26003 -12.08376 -11.94800 -11.84314 -11.81473 -11.56451 -11.54759 -11.50990 -11.41529 -11.28797 -11.18937 -10.64235 -9.80306 -9.42930 -8.29942 -6.43798 0.32511 0.52038 1.07903 1.37998 1.42022 1.49645 1.67572 2.37217 2.83085 3.04096 3.25083 3.50510 3.55833 3.70774 3.79928 3.83581 3.94671 4.14579 4.14721 4.18449 4.31470 4.35557 4.36121 4.55719 4.58498 4.62175 4.67118 4.75343 4.75787 4.85117 4.95738 4.99439 5.00951 5.02822 5.03157 5.08644 5.16867 5.21536 5.21846 5.35369 5.37880 5.40994 5.43072 5.50011 5.56124 5.67505 5.70294 5.78354 6.02475 6.11349 6.64934 6.70008 7.25974 8.82344 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.010765 B = 0.003586 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.371018 B = 7806.329656 C = 9820.829285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.060 4.060 3 C -0.138 4.138 4 C -0.076 4.076 5 C -0.133 4.133 6 C -0.116 4.116 7 C -0.089 4.089 8 C -0.051 4.051 9 C 0.478 3.522 10 O -0.535 6.535 11 O -0.356 6.356 12 C 0.089 3.911 13 C 0.037 3.963 14 C -0.554 4.554 15 H 0.063 0.937 16 C 0.008 3.992 17 N -0.925 5.925 18 Si 0.973 3.027 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.110 4.110 23 C -0.136 4.136 24 C -0.110 4.110 25 C -0.107 4.107 26 C -0.115 4.115 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.004 0.996 39 H 0.006 0.994 40 H 0.268 0.732 41 H 0.062 0.938 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.063 0.937 45 H 0.133 0.867 46 H 0.070 0.930 47 H 0.154 0.846 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 24.219 5.318 25.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 C -0.195 4.195 4 C -0.076 4.076 5 C -0.151 4.151 6 C -0.134 4.134 7 C -0.089 4.089 8 C -0.052 4.052 9 C 0.322 3.678 10 O -0.425 6.425 11 O -0.272 6.272 12 C 0.016 3.984 13 C -0.001 4.001 14 C -0.592 4.592 15 H 0.081 0.919 16 C -0.191 4.191 17 N -0.563 5.563 18 Si 0.796 3.204 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.148 4.148 23 C -0.173 4.173 24 C -0.146 4.146 25 C -0.124 4.124 26 C -0.133 4.133 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.022 0.978 39 H 0.024 0.976 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.140 0.860 43 H 0.126 0.874 44 H 0.082 0.918 45 H 0.151 0.849 46 H 0.089 0.911 47 H 0.171 0.829 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.971 23.972 5.398 24.891 hybrid contribution 0.048 -1.884 -0.415 1.930 sum -3.923 22.088 4.983 22.980 Atomic orbital electron populations 1.21847 0.93600 1.01536 1.02950 1.20191 0.96510 0.96760 0.94336 1.21817 1.00867 0.93943 1.02892 1.20158 0.96482 0.94821 0.96136 1.21197 0.99153 0.96407 0.98335 1.21256 0.99878 0.99362 0.92929 1.19322 1.00232 0.97282 0.92109 1.20713 1.02326 0.85314 0.96869 1.23639 0.73855 0.90819 0.79460 1.90585 1.41223 1.73425 1.37283 1.86543 1.74925 1.23624 1.42121 1.23176 0.99821 0.74911 1.00527 1.18922 0.95944 0.94468 0.90731 1.21331 1.41520 0.92969 1.03337 0.91851 1.25959 0.94205 1.04382 0.94555 1.70090 1.41475 1.38037 1.06747 0.85384 0.79080 0.78016 0.77891 1.19094 1.20254 1.19015 1.23095 0.91358 1.03617 0.96682 1.22901 0.95884 1.02794 0.95741 1.23116 0.98480 1.02144 0.90894 1.21326 0.96254 0.94462 1.00390 1.21197 1.00360 1.00698 0.91036 0.91508 0.91036 0.94004 0.91046 0.93126 0.91217 0.91504 0.86319 0.87239 0.92284 0.92740 0.97769 0.97552 0.92280 0.91922 0.85967 0.87365 0.91784 0.84931 0.91078 0.82903 0.83273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.01 71.98 0.65 -1.53 16 2 C -0.06 -1.02 3.09 -11.54 -0.04 -1.06 16 3 C -0.14 -1.81 9.01 71.98 0.65 -1.17 16 4 C -0.08 -1.67 4.78 -19.87 -0.09 -1.77 16 5 C -0.13 -3.69 9.67 22.27 0.22 -3.48 16 6 C -0.12 -3.64 9.02 22.27 0.20 -3.43 16 7 C -0.09 -2.40 5.01 -19.86 -0.10 -2.50 16 8 C -0.05 -1.40 1.13 -53.15 -0.06 -1.46 16 9 C 0.48 18.03 6.70 71.23 0.48 18.51 16 10 O -0.54 -22.32 15.58 21.94 0.34 -21.97 16 11 O -0.36 -15.30 7.79 -51.34 -0.40 -15.70 16 12 C 0.09 4.23 5.40 71.98 0.39 4.62 16 13 C 0.04 2.03 5.35 29.85 0.16 2.19 16 14 C -0.55 -32.23 9.11 25.60 0.23 -31.99 16 15 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 16 C 0.01 0.48 5.46 84.66 0.46 0.94 16 17 N -0.92 -56.06 13.29 21.45 0.28 -55.78 16 18 Si 0.97 44.26 29.54 68.60 2.03 46.28 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 C -0.11 -2.45 7.23 31.21 0.23 -2.23 16 23 C -0.14 -2.66 7.76 31.21 0.24 -2.42 16 24 C -0.11 -2.24 6.44 31.12 0.20 -2.04 16 25 C -0.11 -2.19 9.19 22.27 0.20 -1.99 16 26 C -0.12 -2.19 8.71 22.27 0.19 -1.99 16 27 H 0.07 0.88 7.39 -2.39 -0.02 0.86 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 1.31 7.88 -2.39 -0.02 1.29 16 31 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.74 7.39 -2.39 -0.02 0.72 16 34 H 0.12 3.23 7.95 -2.91 -0.02 3.21 16 35 H 0.11 4.02 6.28 -2.91 -0.02 4.00 16 36 H 0.06 2.77 8.13 -2.39 -0.02 2.75 16 37 H 0.05 2.60 8.13 -2.39 -0.02 2.58 16 38 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.06 1.59 8.09 -2.39 -0.02 1.57 16 42 H 0.12 2.11 8.09 -2.39 -0.02 2.09 16 43 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.13 1.74 6.02 -2.39 -0.01 1.73 16 46 H 0.07 1.69 7.42 -2.38 -0.02 1.68 16 47 H 0.15 2.20 5.80 -2.91 -0.02 2.18 16 48 H 0.15 1.93 7.10 -2.91 -0.02 1.91 16 Total: -1.00 -69.66 386.44 7.39 -62.27 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.93 Total: 17.70 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 4.21 Total: -32.79 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.28 Total: -55.78 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -0.06 Total: -37.68 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -69.66 7.39 -62.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320976830.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.312 kcal (2) G-P(sol) polarization free energy of solvation -69.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds