Wall clock time and date at job start Tue Mar 31 2020 11:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99998 * 2 1 4 4 N 1.46497 * 109.46938 * 124.99975 * 3 2 1 5 5 C 1.36486 * 127.13797 * 275.79616 * 4 3 2 6 6 N 1.38654 * 126.47496 * 0.02562 * 5 4 3 7 7 C 1.40040 * 119.99743 * 179.97438 * 6 5 4 8 8 C 1.40435 * 125.98092 * 359.71545 * 7 6 5 9 9 C 1.35246 * 107.86442 * 179.82839 * 8 7 6 10 10 N 1.34971 * 107.86542 * 0.43383 * 9 8 7 11 11 C 1.46497 * 125.97019 * 179.70677 * 10 9 8 12 12 N 1.31249 * 125.97684 * 180.02562 * 7 6 5 13 13 N 1.31226 * 107.05176 * 180.02562 * 5 4 3 14 14 N 1.28533 * 109.85231 * 359.97438 * 13 5 4 15 15 C 1.30306 * 110.05565 * 0.02562 * 14 13 5 16 16 C 1.50702 * 126.34264 * 179.73174 * 15 14 13 17 17 C 1.52998 * 109.47072 * 355.38937 * 16 15 14 18 18 C 1.53000 * 109.47140 * 115.38309 * 16 15 14 19 19 C 1.50691 * 109.47286 * 235.38634 * 16 15 14 20 20 H 1.08004 * 120.00248 * 359.97438 * 19 16 15 21 21 C 1.37881 * 120.00199 * 179.97438 * 19 16 15 22 22 N 1.31515 * 119.99834 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 120.00160 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47362 * 59.99719 * 23 21 19 25 25 H 1.48502 * 109.47024 * 180.02562 * 23 21 19 26 26 H 1.48509 * 109.46980 * 299.99947 * 23 21 19 27 27 H 1.08005 * 120.00097 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.00164 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.99624 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46819 * 5.00431 * 3 2 1 31 31 H 1.08996 * 109.47311 * 245.00147 * 3 2 1 32 32 H 0.96998 * 119.99581 * 359.95728 * 6 5 4 33 33 H 1.07997 * 126.06780 * 0.02562 * 8 7 6 34 34 H 1.07995 * 126.06338 * 180.12982 * 9 8 7 35 35 H 1.09000 * 109.47183 * 270.00152 * 11 10 9 36 36 H 1.09004 * 109.47287 * 29.99603 * 11 10 9 37 37 H 1.08992 * 109.47194 * 150.00008 * 11 10 9 38 38 H 1.09000 * 109.47601 * 59.99380 * 17 16 15 39 39 H 1.09000 * 109.47813 * 180.02562 * 17 16 15 40 40 H 1.08999 * 109.46937 * 299.99949 * 17 16 15 41 41 H 1.09001 * 109.46611 * 65.43932 * 18 16 15 42 42 H 1.08998 * 109.47439 * 185.43922 * 18 16 15 43 43 H 1.08994 * 109.47376 * 305.44298 * 18 16 15 44 44 H 0.96999 * 119.99907 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.7154 1.6901 2.4187 6 7 1.4870 2.1020 2.9124 7 6 1.3534 2.4389 4.2651 8 6 2.3733 2.4001 5.2297 9 6 1.8451 2.8008 6.4085 10 7 0.5391 3.0743 6.2053 11 6 -0.4118 3.5346 7.2203 12 7 0.2517 2.8408 4.8544 13 7 3.8301 1.5710 3.1008 14 7 4.7736 1.1653 2.3279 15 6 4.3207 1.0035 1.1169 16 6 5.1142 0.5452 -0.0796 17 6 6.5866 0.4003 0.3101 18 6 4.5786 -0.8052 -0.5599 19 6 4.9849 1.5594 -1.1865 20 1 4.3876 2.4470 -1.0388 21 6 5.6293 1.3543 -2.3882 22 7 6.3571 0.2738 -2.5680 23 14 5.4696 2.6120 -3.7601 24 1 5.9893 3.9224 -3.2934 25 1 6.2515 2.1602 -4.9391 26 1 4.0406 2.7527 -4.1388 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8499 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6213 1.4027 -0.9313 32 1 0.7203 2.1569 2.3208 33 1 3.3984 2.1058 5.0597 34 1 2.3733 2.8824 7.3469 35 1 -0.8859 2.6734 7.6911 36 1 0.1164 4.1165 7.9756 37 1 -1.1732 4.1562 6.7495 38 1 6.6801 -0.3333 1.1108 39 1 7.1607 0.0692 -0.5553 40 1 6.9682 1.3622 0.6523 41 1 3.5600 -0.6818 -0.9279 42 1 5.2118 -1.1824 -1.3628 43 1 4.5823 -1.5131 0.2688 44 1 6.8101 0.1294 -3.4135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338934229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:06 Heat of formation + Delta-G solvation = 199.736916 kcal Electronic energy + Delta-G solvation = -26869.349278 eV Core-core repulsion = 23247.561871 eV Total energy + Delta-G solvation = -3621.787408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.23959 -40.94513 -36.27908 -36.08152 -34.98305 -32.53739 -32.07149 -31.28891 -30.02997 -27.85218 -26.58418 -26.03029 -25.67560 -25.32095 -22.33296 -21.83074 -20.81501 -20.39674 -19.60861 -18.67008 -17.35086 -17.04067 -16.59089 -15.74666 -15.56821 -15.32071 -15.18022 -14.89128 -14.45475 -13.63399 -13.56070 -13.40100 -13.17327 -12.90503 -12.64498 -12.50457 -12.14738 -11.75949 -11.46757 -11.41272 -11.28038 -11.04781 -10.92245 -10.75446 -10.57599 -10.41193 -10.29367 -10.01894 -9.77817 -9.54180 -9.46287 -9.37984 -9.12678 -8.82744 -8.49902 -8.33476 -7.19714 -6.15312 -4.27787 1.94162 1.99519 2.24511 2.61448 2.98076 3.19763 3.25438 3.26842 3.30490 3.73867 3.81523 4.27918 4.59575 4.86559 4.90582 4.92727 5.01170 5.10228 5.23315 5.31729 5.44730 5.51662 5.65950 5.85588 5.92696 5.97834 5.98293 6.29029 6.46218 6.56332 6.63762 6.74667 6.78889 6.82737 6.88457 7.08896 7.16860 7.22509 7.33540 7.48590 7.52900 7.57169 7.69288 7.90234 8.04887 8.06516 8.20978 8.68703 9.37988 9.66081 10.85596 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.019123 B = 0.003655 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.827700 B = 7659.698745 C = 8096.230425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C 0.126 3.874 4 N -0.481 5.481 5 C 0.402 3.598 6 N -0.606 5.606 7 C 0.338 3.662 8 C -0.267 4.267 9 C 0.060 3.940 10 N -0.382 5.382 11 C 0.111 3.889 12 N -0.345 5.345 13 N -0.327 5.327 14 N -0.308 5.308 15 C 0.247 3.753 16 C 0.148 3.852 17 C -0.117 4.117 18 C -0.132 4.132 19 C -0.519 4.519 20 H 0.055 0.945 21 C 0.076 3.924 22 N -0.876 5.876 23 Si 0.893 3.107 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.277 1.277 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.416 0.584 33 H 0.179 0.821 34 H 0.174 0.826 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.020 0.980 39 H 0.088 0.912 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.092 0.908 43 H 0.013 0.987 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.468 2.344 10.885 16.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.179 4.179 3 C 0.003 3.997 4 N -0.178 5.178 5 C 0.045 3.955 6 N -0.244 5.244 7 C 0.081 3.919 8 C -0.298 4.298 9 C -0.085 4.085 10 N -0.167 5.167 11 C -0.031 4.031 12 N -0.177 5.177 13 N -0.173 5.173 14 N -0.143 5.143 15 C -0.021 4.021 16 C 0.145 3.855 17 C -0.176 4.176 18 C -0.190 4.190 19 C -0.558 4.558 20 H 0.073 0.927 21 C -0.128 4.128 22 N -0.513 5.513 23 Si 0.721 3.279 24 H -0.201 1.201 25 H -0.210 1.210 26 H -0.202 1.202 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.139 0.861 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.252 0.748 33 H 0.196 0.804 34 H 0.191 0.809 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.039 0.961 39 H 0.106 0.894 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.111 0.889 43 H 0.032 0.968 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.555 2.597 11.978 17.545 hybrid contribution -0.754 0.597 -1.974 2.196 sum -13.309 3.194 10.004 16.953 Atomic orbital electron populations 1.23838 0.95518 1.02028 1.00888 1.23358 0.96038 0.99092 0.99459 1.21177 0.91929 0.95402 0.91145 1.46036 1.11037 1.53681 1.07055 1.20528 0.89132 1.02944 0.82911 1.39120 1.07236 1.72102 1.05895 1.18748 0.92677 0.96258 0.84228 1.21925 1.02919 1.14461 0.90508 1.22490 0.84935 1.00792 1.00298 1.47928 1.07860 1.54643 1.06239 1.21720 0.92597 1.00132 0.88656 1.77289 1.20141 1.30751 0.89494 1.74363 0.94814 1.23376 1.24710 1.74016 1.21552 1.19064 0.99702 1.25918 0.79888 0.98505 0.97810 1.16874 0.90500 0.93592 0.84540 1.21621 0.96658 0.99131 1.00155 1.21948 1.00449 0.96241 1.00410 1.20857 1.31983 1.05770 0.97162 0.92651 1.24832 0.94467 0.95339 0.98157 1.69802 1.30698 1.25656 1.25127 0.86636 0.78238 0.81787 0.81287 1.20138 1.21029 1.20231 0.88574 0.87999 0.86099 0.90260 0.84275 0.74760 0.80402 0.80851 0.91291 0.89707 0.89751 0.96076 0.89383 0.94694 0.94743 0.88913 0.96802 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 14.32 29.01 0.42 -1.72 16 2 C -0.16 -2.31 9.10 -36.02 -0.33 -2.63 16 3 C 0.13 2.04 5.49 -5.19 -0.03 2.01 16 4 N -0.48 -9.38 2.79 -115.34 -0.32 -9.71 16 5 C 0.40 7.85 8.57 -318.71 -2.73 5.12 16 6 N -0.61 -10.05 5.60 -12.24 -0.07 -10.12 16 7 C 0.34 5.66 8.12 -154.47 -1.25 4.41 16 8 C -0.27 -4.30 9.78 -39.82 -0.39 -4.69 16 9 C 0.06 0.74 11.48 -17.24 -0.20 0.54 16 10 N -0.38 -4.74 4.01 -68.18 -0.27 -5.01 16 11 C 0.11 0.78 11.47 59.85 0.69 1.47 16 12 N -0.34 -5.37 12.59 31.42 0.40 -4.97 16 13 N -0.33 -7.15 9.17 30.34 0.28 -6.87 16 14 N -0.31 -7.28 11.51 32.99 0.38 -6.90 16 15 C 0.25 5.58 6.29 -154.03 -0.97 4.61 16 16 C 0.15 3.45 0.52 -156.82 -0.08 3.37 16 17 C -0.12 -2.82 7.76 37.16 0.29 -2.53 16 18 C -0.13 -2.90 8.05 37.16 0.30 -2.61 16 19 C -0.52 -12.73 6.25 -34.44 -0.22 -12.94 16 20 H 0.06 1.37 7.10 -52.48 -0.37 1.00 16 21 C 0.08 1.86 5.15 -17.82 -0.09 1.77 16 22 N -0.88 -22.08 9.41 55.43 0.52 -21.55 16 23 Si 0.89 19.50 29.54 -169.99 -5.02 14.48 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H 0.10 0.96 7.84 -52.48 -0.41 0.54 16 28 H 0.10 1.05 8.06 -52.49 -0.42 0.62 16 29 H 0.12 1.88 6.87 -52.49 -0.36 1.52 16 30 H 0.08 1.07 7.53 -51.93 -0.39 0.68 16 31 H 0.14 2.52 5.42 -51.93 -0.28 2.24 16 32 H 0.42 5.90 8.45 -40.82 -0.35 5.55 16 33 H 0.18 3.19 5.93 -52.49 -0.31 2.88 16 34 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 40 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.03 0.70 5.08 -51.93 -0.26 0.43 16 42 H 0.09 2.20 6.24 -51.93 -0.32 1.87 16 43 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 LS Contribution 358.09 15.07 5.40 5.40 Total: -1.00 -30.24 358.09 -9.21 -39.45 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.89 Total: 9.63 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -4.60 Total: -3.83 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: 0.91 Total: -65.13 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.24 -9.21 -39.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338934229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.186 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 208.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 199.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds