Wall clock time and date at job start Tue Mar 31 2020 11:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99987 * 2 1 4 4 N 1.46499 * 109.47333 * 117.70977 * 3 2 1 5 5 C 1.37680 * 127.18090 * 95.71244 * 4 3 2 6 6 C 1.47287 * 126.50072 * 0.03790 * 5 4 3 7 7 C 1.36347 * 126.78465 * 165.02494 * 6 5 4 8 8 N 1.33732 * 107.86309 * 179.97438 * 7 6 5 9 9 C 1.30605 * 109.60573 * 359.97438 * 8 7 6 10 10 C 1.50704 * 125.47374 * 180.02562 * 9 8 7 11 11 N 1.35103 * 109.04342 * 359.77045 * 9 8 7 12 12 H 0.97004 * 126.47169 * 180.23473 * 11 9 8 13 13 N 1.31457 * 107.00096 * 180.02562 * 5 4 3 14 14 N 1.28503 * 109.92809 * 0.02562 * 13 5 4 15 15 C 1.31303 * 110.14569 * 359.72109 * 14 13 5 16 16 N 1.38492 * 126.35608 * 180.30792 * 15 14 13 17 17 C 1.46900 * 110.99558 * 294.00523 * 16 15 14 18 18 C 1.46893 * 111.00359 * 57.95950 * 16 15 14 19 19 H 1.09001 * 109.47766 * 300.00293 * 18 16 15 20 20 C 1.53002 * 109.47204 * 60.00199 * 18 16 15 21 21 C 1.50702 * 109.47224 * 179.97438 * 18 16 15 22 22 H 1.07994 * 120.00352 * 0.02562 * 21 18 16 23 23 C 1.37878 * 119.99895 * 180.02562 * 21 18 16 24 24 N 1.31515 * 120.00137 * 0.02562 * 23 21 18 25 25 Si 1.86807 * 119.99953 * 180.02562 * 23 21 18 26 26 H 1.48499 * 109.46797 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47327 * 120.00061 * 25 23 21 28 28 H 1.48501 * 109.46703 * 239.99935 * 25 23 21 29 29 H 1.07998 * 120.00373 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.99596 * 179.72469 * 1 2 3 31 31 H 1.07995 * 119.99878 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47655 * 237.71571 * 3 2 1 33 33 H 1.09010 * 109.47316 * 357.71108 * 3 2 1 34 34 H 1.07998 * 126.07247 * 359.96161 * 7 6 5 35 35 H 1.08995 * 109.47143 * 89.98159 * 10 9 8 36 36 H 1.09010 * 109.46899 * 209.97739 * 10 9 8 37 37 H 1.08991 * 109.47527 * 329.97680 * 10 9 8 38 38 H 1.09004 * 109.47128 * 67.71408 * 17 16 15 39 39 H 1.09000 * 109.47105 * 187.70945 * 17 16 15 40 40 H 1.08994 * 109.47645 * 307.71437 * 17 16 15 41 41 H 1.08996 * 109.47704 * 179.97438 * 20 18 16 42 42 H 1.08998 * 109.47025 * 300.00524 * 20 18 16 43 43 H 1.09005 * 109.47092 * 60.00057 * 20 18 16 44 44 H 0.96999 * 119.99666 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.8639 1.4069 1.2228 5 6 4.1921 1.0792 1.3775 6 6 5.0920 0.5543 0.3363 7 6 6.4531 0.4927 0.3889 8 7 6.8836 -0.0497 -0.7552 9 6 5.8619 -0.3303 -1.5189 10 6 5.9392 -0.9532 -2.8890 11 7 4.7246 0.0224 -0.8808 12 1 3.8201 -0.0775 -1.2168 13 7 4.5049 1.3238 2.6307 14 7 3.4781 1.7743 3.2585 15 6 2.4493 1.8510 2.4463 16 7 1.1789 2.2971 2.7706 17 6 0.5310 1.3904 3.7277 18 6 1.2199 3.6701 3.2910 19 1 1.8403 3.7009 4.1868 20 6 1.8104 4.6005 2.2296 21 6 -0.1775 4.1203 3.6315 22 1 -1.0124 3.4530 3.4771 23 6 -0.3899 5.3841 4.1401 24 7 0.6268 6.1969 4.3277 25 14 -2.1219 5.9418 4.5628 26 1 -3.0813 4.8493 4.2607 27 1 -2.1946 6.2798 6.0069 28 1 -2.4668 7.1399 3.7560 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 -0.0045 31 1 1.8499 -0.9353 -0.0004 32 1 2.7205 1.3454 -0.8687 33 1 1.3558 2.1333 -0.0410 34 1 7.0735 0.8234 1.2087 35 1 5.8996 -2.0385 -2.7975 36 1 5.0993 -0.6086 -3.4926 37 1 6.8741 -0.6628 -3.3680 38 1 1.0486 1.4429 4.6855 39 1 -0.5098 1.6857 3.8605 40 1 0.5734 0.3699 3.3473 41 1 1.8404 5.6194 2.6156 42 1 2.8210 4.2751 1.9829 43 1 1.1900 4.5699 1.3339 44 1 0.4772 7.0861 4.6852 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339628397.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:51 Heat of formation + Delta-G solvation = 174.940697 kcal Electronic energy + Delta-G solvation = -26965.151859 eV Core-core repulsion = 23342.289206 eV Total energy + Delta-G solvation = -3622.862652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.72765 -41.95199 -37.11020 -36.22640 -33.13371 -32.95760 -32.59682 -32.17743 -29.85700 -29.29315 -27.22729 -26.52674 -25.45958 -24.39867 -22.96006 -21.82432 -21.37901 -20.68783 -20.08592 -19.34146 -17.90872 -16.83562 -16.43978 -16.04695 -15.56614 -15.48801 -15.19598 -14.66521 -14.56617 -14.10656 -13.89646 -13.57011 -13.42897 -13.19681 -13.00930 -12.73539 -12.48981 -12.36800 -11.91159 -11.75321 -11.33209 -11.21426 -11.02544 -10.84541 -10.46916 -10.37866 -10.35106 -10.30879 -10.20944 -10.16952 -10.01904 -9.81706 -9.34900 -9.15232 -8.58484 -7.89676 -7.78969 -6.13181 -4.20344 1.18376 1.74679 2.32970 2.54319 2.71430 2.92592 3.22544 3.30742 3.33177 3.39121 4.13037 4.26258 4.28589 4.46404 4.55447 4.58734 4.76605 4.82431 5.10545 5.16531 5.19389 5.30312 5.37472 5.51171 5.57801 5.58974 5.62720 5.87675 6.10471 6.22120 6.25066 6.26757 6.41412 6.48646 6.53273 6.66621 6.73654 6.85908 6.98757 7.05316 7.30408 7.55988 7.66812 7.81826 7.83297 8.11098 8.36053 8.83221 9.05956 9.44917 10.93756 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.021427 B = 0.003566 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.476663 B = 7849.064025 C = 8390.818369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.201 4.201 3 C 0.142 3.858 4 N -0.469 5.469 5 C 0.221 3.779 6 C 0.052 3.948 7 C 0.041 3.959 8 N -0.486 5.486 9 C 0.220 3.780 10 C -0.069 4.069 11 N -0.567 5.567 12 H 0.417 0.583 13 N -0.258 5.258 14 N -0.311 5.311 15 C 0.399 3.601 16 N -0.471 5.471 17 C 0.053 3.947 18 C 0.224 3.776 19 H 0.024 0.976 20 C -0.131 4.131 21 C -0.512 4.512 22 H 0.067 0.933 23 C 0.063 3.937 24 N -0.886 5.886 25 Si 0.901 3.099 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.284 1.284 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.184 0.816 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.037 0.963 39 H 0.089 0.911 40 H 0.042 0.958 41 H 0.093 0.907 42 H 0.001 0.999 43 H 0.030 0.970 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.760 -13.708 -14.791 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.220 4.220 3 C 0.019 3.981 4 N -0.163 5.163 5 C -0.043 4.043 6 C -0.064 4.064 7 C -0.111 4.111 8 N -0.206 5.206 9 C -0.043 4.043 10 C -0.128 4.128 11 N -0.174 5.174 12 H 0.257 0.743 13 N -0.101 5.101 14 N -0.155 5.155 15 C 0.044 3.956 16 N -0.199 5.199 17 C -0.095 4.095 18 C 0.120 3.880 19 H 0.041 0.959 20 C -0.189 4.189 21 C -0.551 4.551 22 H 0.085 0.915 23 C -0.140 4.140 24 N -0.524 5.524 25 Si 0.728 3.272 26 H -0.197 1.197 27 H -0.209 1.209 28 H -0.210 1.210 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.100 0.900 33 H 0.132 0.868 34 H 0.201 0.799 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.108 0.892 40 H 0.061 0.939 41 H 0.112 0.888 42 H 0.021 0.979 43 H 0.050 0.950 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.146 -13.512 -14.044 19.925 hybrid contribution -2.620 0.473 -0.196 2.670 sum 1.526 -13.039 -14.240 19.368 Atomic orbital electron populations 1.24087 0.95483 1.02992 0.94260 1.22939 0.96737 0.97026 1.05300 1.20886 0.94789 0.98488 0.83945 1.46557 1.09363 1.49448 1.10915 1.21220 0.81777 1.06874 0.94463 1.17820 0.93288 1.08967 0.86329 1.22505 0.90080 1.01640 0.96910 1.70206 1.29307 1.17458 1.03590 1.23346 0.80806 1.02496 0.97700 1.20240 1.04475 1.00473 0.87587 1.43374 1.10300 1.48921 1.14811 0.74346 1.74395 1.21068 1.14389 1.00202 1.74767 0.96293 1.19312 1.25129 1.22812 0.94044 0.96818 0.81936 1.59261 1.08477 1.06367 1.45779 1.22181 1.00735 0.93275 0.93294 1.19463 0.97684 0.78144 0.92695 0.95873 1.21822 0.95003 1.03776 0.98326 1.21059 0.91726 0.99477 1.42804 0.91494 1.24921 0.97285 0.96424 0.95327 1.69906 1.29985 1.07997 1.44561 0.86401 0.84038 0.78638 0.78081 1.19684 1.20935 1.20991 0.87075 0.87785 0.87462 0.90035 0.86848 0.79865 0.89850 0.90694 0.88705 0.94466 0.89223 0.93896 0.88825 0.97948 0.95044 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 14.32 29.01 0.42 -0.83 16 2 C -0.20 -2.07 9.58 -36.03 -0.34 -2.41 16 3 C 0.14 1.76 6.02 -5.20 -0.03 1.73 16 4 N -0.47 -7.87 2.82 -116.04 -0.33 -8.20 16 5 C 0.22 3.84 7.91 -153.75 -1.22 2.62 16 6 C 0.05 0.74 6.94 -82.18 -0.57 0.17 16 7 C 0.04 0.59 11.85 -17.41 -0.21 0.38 16 8 N -0.49 -6.54 11.21 -10.48 -0.12 -6.66 16 9 C 0.22 2.31 8.13 -155.27 -1.26 1.05 16 10 C -0.07 -0.40 10.51 36.01 0.38 -0.02 16 11 N -0.57 -6.04 5.70 -6.94 -0.04 -6.08 16 12 H 0.42 3.38 6.56 -40.82 -0.27 3.12 16 13 N -0.26 -5.31 12.23 32.51 0.40 -4.91 16 14 N -0.31 -7.00 12.07 30.34 0.37 -6.63 16 15 C 0.40 8.14 5.02 -318.68 -1.60 6.54 16 16 N -0.47 -9.86 4.65 -176.04 -0.82 -10.68 16 17 C 0.05 1.01 9.12 60.06 0.55 1.55 16 18 C 0.22 5.57 1.99 -68.87 -0.14 5.43 16 19 H 0.02 0.67 8.06 -51.93 -0.42 0.25 16 20 C -0.13 -3.22 8.84 37.16 0.33 -2.89 16 21 C -0.51 -13.22 7.97 -34.44 -0.27 -13.49 16 22 H 0.07 1.67 6.40 -52.49 -0.34 1.34 16 23 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 24 N -0.89 -24.70 11.32 55.43 0.63 -24.07 16 25 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 29 H 0.11 1.14 7.84 -52.49 -0.41 0.73 16 30 H 0.10 0.81 8.06 -52.48 -0.42 0.39 16 31 H 0.11 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.08 0.81 5.98 -51.93 -0.31 0.50 16 33 H 0.11 1.52 7.79 -51.92 -0.40 1.11 16 34 H 0.18 2.48 8.06 -52.49 -0.42 2.06 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.28 8.14 -51.92 -0.42 -0.15 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.69 6.38 -51.93 -0.33 1.35 16 40 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 41 H 0.09 2.52 6.07 -51.93 -0.31 2.21 16 42 H 0.00 0.04 7.22 -51.93 -0.38 -0.34 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 367.93 15.07 5.54 5.54 Total: -1.00 -32.27 367.93 -9.56 -41.83 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.11 Total: 3.12 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -4.07 Total: 1.39 kcal Atomic # 7 Polarization: -67.33 SS G_CDS: 0.09 Total: -67.24 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.27 -9.56 -41.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339628397.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.774 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds