Wall clock time and date at job start Tue Mar 31 2020 11:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50710 * 119.99951 * 2 1 4 4 N 1.46497 * 109.47229 * 240.00453 * 3 2 1 5 5 C 1.37532 * 127.16774 * 274.99247 * 4 3 2 6 6 C 1.47905 * 126.47094 * 359.96276 * 5 4 3 7 7 C 1.41031 * 126.06372 * 179.71374 * 6 5 4 8 8 C 1.35024 * 107.84111 * 179.82823 * 7 6 5 9 9 C 1.50697 * 125.98577 * 180.15826 * 8 7 6 10 10 N 1.35071 * 108.02964 * 0.43302 * 8 7 6 11 11 H 0.96993 * 125.91306 * 179.73777 * 10 8 7 12 12 N 1.31790 * 126.06565 * 0.02738 * 6 5 4 13 13 N 1.31235 * 107.05588 * 179.84109 * 5 4 3 14 14 N 1.28508 * 109.94425 * 0.43849 * 13 5 4 15 15 C 1.31321 * 110.08861 * 359.71789 * 14 13 5 16 16 N 1.38458 * 126.37511 * 179.97438 * 15 14 13 17 17 C 1.46906 * 111.00171 * 295.13226 * 16 15 14 18 18 C 1.46899 * 111.00146 * 59.09013 * 16 15 14 19 19 H 1.09007 * 109.47005 * 299.99573 * 18 16 15 20 20 C 1.53000 * 109.47246 * 59.99439 * 18 16 15 21 21 C 1.50704 * 109.47103 * 180.02562 * 18 16 15 22 22 H 1.07997 * 119.99896 * 359.97438 * 21 18 16 23 23 C 1.37875 * 119.99476 * 179.97438 * 21 18 16 24 24 N 1.31508 * 120.00487 * 359.97438 * 23 21 18 25 25 Si 1.86807 * 119.99510 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.46996 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.46783 * 119.99670 * 25 23 21 28 28 H 1.48491 * 109.47070 * 239.99595 * 25 23 21 29 29 H 1.07998 * 119.99990 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.00010 * 179.97438 * 1 2 3 31 31 H 1.07992 * 120.00353 * 179.72808 * 2 1 3 32 32 H 1.09000 * 109.47084 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.46631 * 120.00095 * 3 2 1 34 34 H 1.08001 * 126.07180 * 359.97404 * 7 6 5 35 35 H 1.08997 * 109.47378 * 270.29663 * 9 8 7 36 36 H 1.09004 * 109.47166 * 30.29976 * 9 8 7 37 37 H 1.09001 * 109.46995 * 150.29685 * 9 8 7 38 38 H 1.08996 * 109.46647 * 65.79152 * 17 16 15 39 39 H 1.08997 * 109.47181 * 185.79556 * 17 16 15 40 40 H 1.08998 * 109.46944 * 305.79076 * 17 16 15 41 41 H 1.09001 * 109.46948 * 180.02562 * 20 18 16 42 42 H 1.08995 * 109.47150 * 300.00339 * 20 18 16 43 43 H 1.08999 * 109.46912 * 60.00440 * 20 18 16 44 44 H 0.97004 * 119.99966 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9056 1.3829 -1.1962 5 6 4.1710 0.8683 -1.3564 6 6 4.9518 0.1236 -0.3448 7 6 6.2473 -0.4054 -0.5203 8 6 6.6083 -1.0068 0.6335 9 6 7.9182 -1.7040 0.8964 10 7 5.5874 -0.8794 1.5086 11 1 5.5702 -1.2209 2.4163 12 7 4.5580 -0.1684 0.8786 13 7 4.5537 1.1607 -2.5771 14 7 3.6307 1.8216 -3.1795 15 6 2.6003 1.9862 -2.3822 16 7 1.4236 2.6489 -2.6874 17 6 1.6698 4.0780 -2.9223 18 6 0.7566 2.0328 -3.8421 19 1 1.4167 2.0758 -4.7085 20 6 0.4289 0.5728 -3.5227 21 6 -0.5170 2.7797 -4.1441 22 1 -0.8026 3.6270 -3.5384 23 6 -1.3175 2.3812 -5.1935 24 7 -0.9695 1.3497 -5.9313 25 14 -2.8966 3.3066 -5.5674 26 1 -3.0599 4.4190 -4.5973 27 1 -2.8338 3.8562 -6.9456 28 1 -4.0515 2.3799 -5.4562 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9352 0.0044 32 1 1.3552 2.1337 0.0005 33 1 2.6901 1.3628 0.8900 34 1 6.8452 -0.3390 -1.4172 35 1 7.8323 -2.7549 0.6203 36 1 8.7044 -1.2358 0.3041 37 1 8.1654 -1.6255 1.9551 38 1 2.2799 4.1991 -3.8174 39 1 0.7189 4.5930 -3.0582 40 1 2.1935 4.5021 -2.0656 41 1 -0.0656 0.1156 -4.3797 42 1 1.3503 0.0330 -3.3046 43 1 -0.2312 0.5298 -2.6563 44 1 -1.5326 1.0696 -6.6698 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339851532.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:17 Heat of formation + Delta-G solvation = 191.264353 kcal Electronic energy + Delta-G solvation = -26912.504688 eV Core-core repulsion = 23290.349882 eV Total energy + Delta-G solvation = -3622.154806 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.44586 -41.22792 -36.99949 -35.80762 -33.23832 -32.88251 -32.21264 -31.55484 -29.41578 -28.78657 -27.26464 -26.65889 -25.47273 -24.34176 -23.27879 -21.73378 -20.66590 -20.41800 -19.33861 -19.27296 -17.44956 -16.74861 -16.25869 -15.99277 -15.23302 -15.18254 -14.86545 -14.63817 -14.37068 -13.93446 -13.63435 -13.32648 -13.27896 -13.12774 -13.03945 -12.47430 -12.32088 -12.15263 -11.79862 -11.29511 -11.20438 -11.11136 -10.95917 -10.92316 -10.75621 -10.35970 -10.28562 -10.19088 -10.04991 -10.01949 -9.62736 -9.29306 -9.04705 -8.84096 -8.50348 -8.17308 -7.69515 -6.05224 -4.11705 1.30468 1.96121 2.18349 2.50888 2.85848 2.98337 3.28139 3.36137 3.39309 3.55648 4.13350 4.35792 4.41795 4.70610 4.74352 4.89700 5.07723 5.13415 5.20593 5.27534 5.40812 5.47873 5.57944 5.63513 5.75412 5.78864 5.94274 6.03519 6.18860 6.33780 6.36778 6.42935 6.63075 6.74535 6.80810 6.84806 6.93223 7.02939 7.03941 7.18110 7.39621 7.42222 7.68753 7.76252 7.96256 8.21175 8.47252 8.91942 9.18630 9.52959 11.01674 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.023988 B = 0.003477 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.987306 B = 8050.532992 C = 8454.103117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.175 4.175 3 C 0.147 3.853 4 N -0.452 5.452 5 C 0.219 3.781 6 C 0.170 3.830 7 C -0.228 4.228 8 C 0.083 3.917 9 C -0.091 4.091 10 N -0.469 5.469 11 H 0.439 0.561 12 N -0.280 5.280 13 N -0.256 5.256 14 N -0.314 5.314 15 C 0.397 3.603 16 N -0.473 5.473 17 C 0.049 3.951 18 C 0.226 3.774 19 H 0.021 0.979 20 C -0.129 4.129 21 C -0.509 4.509 22 H 0.067 0.933 23 C 0.063 3.937 24 N -0.887 5.887 25 Si 0.900 3.100 26 H -0.272 1.272 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.159 0.841 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.037 0.963 39 H 0.090 0.910 40 H 0.043 0.957 41 H 0.089 0.911 42 H 0.000 1.000 43 H 0.036 0.964 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.186 -4.962 16.995 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.194 4.194 3 C 0.025 3.975 4 N -0.144 5.144 5 C -0.047 4.047 6 C 0.004 3.996 7 C -0.258 4.258 8 C -0.044 4.044 9 C -0.150 4.150 10 N -0.180 5.180 11 H 0.283 0.717 12 N -0.107 5.107 13 N -0.101 5.101 14 N -0.159 5.159 15 C 0.041 3.959 16 N -0.200 5.200 17 C -0.098 4.098 18 C 0.122 3.878 19 H 0.039 0.961 20 C -0.187 4.187 21 C -0.548 4.548 22 H 0.085 0.915 23 C -0.140 4.140 24 N -0.525 5.525 25 Si 0.727 3.273 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.176 0.824 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.109 0.891 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.019 0.981 43 H 0.055 0.945 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.704 -4.901 16.838 21.084 hybrid contribution -0.697 -0.015 0.153 0.714 sum 11.007 -4.916 16.992 20.834 Atomic orbital electron populations 1.23931 0.95546 1.02462 0.96587 1.22815 0.96067 0.97460 1.03094 1.20903 0.93681 0.97895 0.85006 1.46459 1.13354 1.41233 1.13402 1.21043 0.84629 1.04287 0.94747 1.18833 0.93121 0.97444 0.90182 1.21168 0.96655 1.08018 0.99917 1.21034 0.92302 1.00375 0.90722 1.20465 0.91209 1.00362 1.02943 1.46177 1.11629 1.45759 1.14409 0.71682 1.77598 1.10151 1.15547 1.07402 1.74262 1.22353 1.12093 1.01354 1.74762 0.99348 1.17248 1.24590 1.22791 0.93822 0.96367 0.82905 1.59250 1.13146 1.02969 1.44665 1.22222 1.02330 0.86209 0.99061 1.19440 0.93106 0.91700 0.83570 0.96086 1.21806 0.97590 0.97228 1.02051 1.21079 1.05326 1.14428 1.13977 0.91509 1.24907 0.98085 0.95138 0.95825 1.69916 1.38130 1.25537 1.18956 0.86419 0.82968 0.79707 0.78172 1.19675 1.21011 1.21047 0.87659 0.88210 0.87504 0.87838 0.88281 0.82382 0.89971 0.89251 0.91062 0.94472 0.89115 0.93799 0.89224 0.98072 0.94497 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 13.53 29.02 0.39 -1.71 16 2 C -0.18 -2.65 9.85 -36.02 -0.35 -3.00 16 3 C 0.15 2.29 6.13 -5.19 -0.03 2.25 16 4 N -0.45 -8.53 2.82 -115.94 -0.33 -8.86 16 5 C 0.22 4.13 7.94 -153.80 -1.22 2.91 16 6 C 0.17 2.65 7.07 -82.87 -0.59 2.06 16 7 C -0.23 -2.91 10.67 -39.67 -0.42 -3.33 16 8 C 0.08 0.78 7.19 -82.31 -0.59 0.18 16 9 C -0.09 -0.45 10.42 36.00 0.38 -0.07 16 10 N -0.47 -4.46 7.35 33.44 0.25 -4.22 16 11 H 0.44 2.55 8.96 -182.62 -1.64 0.91 16 12 N -0.28 -3.80 11.09 33.37 0.37 -3.43 16 13 N -0.26 -5.47 12.21 32.59 0.40 -5.07 16 14 N -0.31 -7.34 12.11 30.32 0.37 -6.97 16 15 C 0.40 8.62 5.02 -318.83 -1.60 7.02 16 16 N -0.47 -10.49 4.62 -176.07 -0.81 -11.30 16 17 C 0.05 0.98 9.14 60.07 0.55 1.53 16 18 C 0.23 5.81 1.99 -68.86 -0.14 5.67 16 19 H 0.02 0.63 8.08 -51.93 -0.42 0.21 16 20 C -0.13 -3.26 8.84 37.16 0.33 -2.94 16 21 C -0.51 -13.53 7.95 -34.44 -0.27 -13.80 16 22 H 0.07 1.72 6.39 -52.49 -0.34 1.39 16 23 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 24 N -0.89 -25.22 11.32 55.43 0.63 -24.59 16 25 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H 0.11 1.50 7.83 -52.49 -0.41 1.09 16 30 H 0.10 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.10 1.58 7.75 -51.93 -0.40 1.17 16 33 H 0.10 1.38 6.95 -51.93 -0.36 1.02 16 34 H 0.16 1.92 8.06 -52.49 -0.42 1.49 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.78 6.30 -51.93 -0.33 1.46 16 40 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 42 H 0.00 0.01 7.22 -51.93 -0.38 -0.37 16 43 H 0.04 0.88 7.33 -51.93 -0.38 0.50 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -32.82 369.47 -9.73 -42.55 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.48 Total: 2.12 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -3.67 Total: -1.62 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: 0.87 Total: -64.43 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.82 -9.73 -42.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339851532.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.814 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 200.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds