Wall clock time and date at job start Tue Mar 31 2020 11:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50707 * 119.99677 * 2 1 4 4 N 1.46501 * 109.47036 * 123.75318 * 3 2 1 5 5 C 1.37684 * 127.18177 * 84.83404 * 4 3 2 6 6 C 1.47288 * 126.49927 * 359.94457 * 5 4 3 7 7 N 1.37823 * 126.79158 * 356.52328 * 6 5 4 8 8 H 0.96998 * 126.46886 * 0.02562 * 7 6 5 9 9 C 1.35107 * 107.05979 * 180.02562 * 7 6 5 10 10 N 1.30607 * 109.04520 * 359.76359 * 9 7 6 11 11 C 1.33729 * 109.60606 * 0.38857 * 10 9 7 12 12 C 1.50695 * 126.06713 * 179.87905 * 11 10 9 13 13 N 1.31451 * 106.99823 * 180.20257 * 5 4 3 14 14 N 1.28507 * 109.92850 * 359.62098 * 13 5 4 15 15 C 1.31294 * 110.14551 * 0.38999 * 14 13 5 16 16 N 1.38490 * 126.35287 * 179.78390 * 15 14 13 17 17 C 1.46907 * 110.99969 * 260.84629 * 16 15 14 18 18 C 1.46897 * 111.00042 * 24.79720 * 16 15 14 19 19 H 1.08997 * 109.47485 * 300.00017 * 18 16 15 20 20 C 1.52995 * 109.47040 * 60.00349 * 18 16 15 21 21 C 1.50704 * 109.46930 * 180.02562 * 18 16 15 22 22 H 1.07999 * 120.00430 * 359.97438 * 21 18 16 23 23 C 1.37875 * 120.00043 * 180.02562 * 21 18 16 24 24 N 1.31516 * 119.99745 * 359.97438 * 23 21 18 25 25 Si 1.86795 * 120.00363 * 180.02562 * 23 21 18 26 26 H 1.48505 * 109.47117 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47703 * 119.99512 * 25 23 21 28 28 H 1.48503 * 109.47097 * 240.00156 * 25 23 21 29 29 H 1.07999 * 119.99535 * 179.97438 * 1 2 3 30 30 H 1.07990 * 120.00269 * 0.02562 * 1 2 3 31 31 H 1.07996 * 119.99996 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.47172 * 3.75109 * 3 2 1 33 33 H 1.09001 * 109.46595 * 243.75131 * 3 2 1 34 34 H 1.08005 * 125.47796 * 179.97438 * 9 7 6 35 35 H 1.08996 * 109.47272 * 269.68953 * 12 11 10 36 36 H 1.09001 * 109.47163 * 29.69212 * 12 11 10 37 37 H 1.08996 * 109.47183 * 149.68775 * 12 11 10 38 38 H 1.08995 * 109.47196 * 66.90327 * 17 16 15 39 39 H 1.08998 * 109.47009 * 186.90987 * 17 16 15 40 40 H 1.09000 * 109.46848 * 306.90406 * 17 16 15 41 41 H 1.09000 * 109.47260 * 179.97438 * 20 18 16 42 42 H 1.09004 * 109.46896 * 299.99817 * 20 18 16 43 43 H 1.09005 * 109.47559 * 59.99585 * 20 18 16 44 44 H 0.97005 * 119.99810 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9723 1.3444 1.1484 5 6 4.2444 0.8228 1.2210 6 6 4.9614 0.1098 0.1501 7 7 4.4687 -0.2232 -1.0933 8 1 3.5800 -0.0316 -1.4315 9 6 5.4573 -0.8668 -1.7520 10 7 6.5096 -0.9339 -0.9813 11 6 6.2437 -0.3518 0.1929 12 6 7.1946 -0.2231 1.3549 13 7 4.6955 1.0769 2.4293 14 7 3.8084 1.7185 3.1021 15 6 2.7346 1.9067 2.3705 16 7 1.5761 2.5552 2.7645 17 6 0.5411 1.5905 3.1599 18 6 1.8490 3.5083 3.8484 19 1 2.2601 2.9755 4.7059 20 6 2.8567 4.5538 3.3666 21 6 0.5677 4.1926 4.2500 22 1 -0.3568 3.9446 3.7498 23 6 0.5758 5.1361 5.2554 24 7 1.7016 5.4384 5.8643 25 14 -1.0124 5.9838 5.7537 26 1 -2.1301 5.4694 4.9221 27 1 -1.2927 5.7078 7.1857 28 1 -0.8771 7.4484 5.5490 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3571 2.1325 0.0672 33 1 2.6388 1.3926 -0.9217 34 1 5.3894 -1.2595 -2.7558 35 1 7.0886 -1.0887 2.0087 36 1 8.2179 -0.1718 0.9830 37 1 6.9651 0.6843 1.9134 38 1 0.8542 1.0731 4.0667 39 1 -0.3945 2.1175 3.3467 40 1 0.3959 0.8650 2.3595 41 1 3.0589 5.2613 4.1707 42 1 3.7834 4.0585 3.0764 43 1 2.4456 5.0866 2.5091 44 1 1.7073 6.1020 6.5719 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340258496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:47 Heat of formation + Delta-G solvation = 179.923791 kcal Electronic energy + Delta-G solvation = -27153.071983 eV Core-core repulsion = 23530.425414 eV Total energy + Delta-G solvation = -3622.646569 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.73414 -41.89984 -37.17284 -36.36656 -33.31791 -33.02781 -32.76363 -31.79389 -29.35526 -29.01921 -27.28522 -26.51607 -25.48534 -24.43662 -22.72264 -22.22353 -21.42124 -20.52385 -19.88621 -19.18469 -18.14443 -16.97191 -16.31625 -16.14264 -15.56657 -15.35931 -15.16163 -14.75370 -14.56801 -14.32991 -13.96542 -13.54167 -13.29579 -12.90347 -12.67526 -12.65688 -12.39580 -12.07917 -11.95962 -11.83945 -11.19085 -11.12287 -11.00587 -10.79344 -10.51480 -10.31339 -10.28010 -10.19769 -10.12811 -10.07937 -9.96287 -9.86109 -9.50548 -9.02279 -8.56006 -8.14499 -7.44166 -6.09338 -4.17073 1.19643 1.62021 2.41470 2.54316 2.71226 2.94201 3.24158 3.32108 3.34296 3.41137 4.17928 4.25407 4.33302 4.45912 4.52920 4.54405 4.71050 4.94828 5.16144 5.22647 5.23565 5.37618 5.44529 5.56358 5.80238 5.94557 6.00929 6.07804 6.09588 6.11768 6.12747 6.22610 6.29137 6.41985 6.58452 6.75185 6.87990 7.02769 7.06023 7.11383 7.36292 7.58954 7.68326 7.84396 7.89573 8.17967 8.37256 8.84621 9.14141 9.47809 10.97185 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.003810 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.386817 B = 7347.675573 C = 8373.676446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.199 4.199 3 C 0.139 3.861 4 N -0.481 5.481 5 C 0.218 3.782 6 C 0.050 3.950 7 N -0.572 5.572 8 H 0.417 0.583 9 C 0.200 3.800 10 N -0.489 5.489 11 C 0.065 3.935 12 C -0.073 4.073 13 N -0.253 5.253 14 N -0.307 5.307 15 C 0.398 3.602 16 N -0.463 5.463 17 C 0.042 3.958 18 C 0.227 3.773 19 H 0.028 0.972 20 C -0.133 4.133 21 C -0.516 4.516 22 H 0.065 0.935 23 C 0.064 3.936 24 N -0.883 5.883 25 Si 0.900 3.100 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.283 1.283 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.213 0.787 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.033 0.967 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.017 0.983 43 H 0.026 0.974 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -11.880 -16.028 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.218 4.218 3 C 0.016 3.984 4 N -0.177 5.177 5 C -0.046 4.046 6 C -0.066 4.066 7 N -0.179 5.179 8 H 0.257 0.743 9 C -0.083 4.083 10 N -0.209 5.209 11 C -0.068 4.068 12 C -0.130 4.130 13 N -0.095 5.095 14 N -0.151 5.151 15 C 0.044 3.956 16 N -0.189 5.189 17 C -0.105 4.105 18 C 0.123 3.877 19 H 0.045 0.955 20 C -0.192 4.192 21 C -0.555 4.555 22 H 0.083 0.917 23 C -0.139 4.139 24 N -0.521 5.521 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.101 0.899 34 H 0.230 0.770 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.051 0.949 39 H 0.111 0.889 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.036 0.964 43 H 0.045 0.955 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.699 -11.755 -15.229 19.313 hybrid contribution -2.823 0.569 -0.452 2.915 sum -1.125 -11.186 -15.681 19.295 Atomic orbital electron populations 1.24078 0.95433 1.03052 0.95311 1.23109 0.96756 0.97578 1.04375 1.20907 0.92711 0.98294 0.86527 1.46400 1.13048 1.45733 1.12492 1.21142 0.83640 1.04163 0.95624 1.17639 0.94875 1.08843 0.85229 1.43485 1.15645 1.46038 1.12767 0.74289 1.25016 0.83722 0.99659 0.99932 1.70135 1.26435 1.21457 1.02858 1.20891 0.91816 0.99124 0.94986 1.20205 0.96144 1.03871 0.92817 1.74379 1.22825 1.12549 0.99777 1.74865 0.99846 1.16949 1.23480 1.23012 0.95837 0.94310 0.82478 1.59158 1.02130 1.14177 1.43447 1.22335 0.95914 0.93836 0.98392 1.19403 0.96067 0.87337 0.84867 0.95460 1.21824 0.96060 1.00245 1.01029 1.21068 0.93230 1.22601 1.18580 0.91698 1.24902 0.96483 0.96509 0.95973 1.69925 1.25336 1.32701 1.24100 0.86422 0.83153 0.79348 0.78331 1.19775 1.20960 1.20950 0.87504 0.87276 0.87078 0.86635 0.89858 0.77044 0.90952 0.91371 0.89227 0.94867 0.88904 0.93376 0.89042 0.96382 0.95477 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 13.02 29.01 0.38 -0.76 16 2 C -0.20 -1.85 8.71 -36.02 -0.31 -2.17 16 3 C 0.14 1.57 5.92 -5.19 -0.03 1.54 16 4 N -0.48 -7.79 2.82 -116.04 -0.33 -8.12 16 5 C 0.22 3.72 7.87 -153.75 -1.21 2.51 16 6 C 0.05 0.70 7.03 -82.17 -0.58 0.13 16 7 N -0.57 -5.65 5.88 -10.69 -0.06 -5.72 16 8 H 0.42 3.01 5.92 -40.82 -0.24 2.76 16 9 C 0.20 1.87 13.02 -90.23 -1.18 0.70 16 10 N -0.49 -6.42 11.21 -10.54 -0.12 -6.53 16 11 C 0.06 0.93 7.14 -82.45 -0.59 0.35 16 12 C -0.07 -0.98 9.97 36.00 0.36 -0.63 16 13 N -0.25 -5.11 10.43 32.51 0.34 -4.77 16 14 N -0.31 -6.91 10.25 30.34 0.31 -6.60 16 15 C 0.40 8.06 5.90 -318.70 -1.88 6.18 16 16 N -0.46 -9.69 4.63 -176.04 -0.81 -10.50 16 17 C 0.04 0.77 9.13 60.07 0.55 1.32 16 18 C 0.23 5.70 1.74 -68.87 -0.12 5.59 16 19 H 0.03 0.79 7.88 -51.93 -0.41 0.38 16 20 C -0.13 -3.39 8.81 37.15 0.33 -3.06 16 21 C -0.52 -13.45 7.96 -34.44 -0.27 -13.73 16 22 H 0.06 1.63 6.40 -52.49 -0.34 1.29 16 23 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 24 N -0.88 -24.80 11.32 55.43 0.63 -24.17 16 25 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 H 0.11 0.70 8.06 -52.49 -0.42 0.28 16 30 H 0.11 0.87 7.84 -52.49 -0.41 0.46 16 31 H 0.11 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.12 1.37 7.76 -51.93 -0.40 0.96 16 33 H 0.08 0.73 6.16 -51.93 -0.32 0.41 16 34 H 0.21 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.35 6.70 -51.93 -0.35 1.00 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.69 6.34 -51.93 -0.33 1.36 16 40 H 0.05 0.72 6.03 -51.93 -0.31 0.41 16 41 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 42 H 0.02 0.44 6.39 -51.93 -0.33 0.11 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 357.46 15.07 5.39 5.39 Total: -1.00 -32.77 357.46 -10.18 -42.96 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.85 Total: 3.03 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -4.65 Total: -0.42 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: -0.05 Total: -66.42 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.77 -10.18 -42.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340258496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.881 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds