Wall clock time and date at job start Tue Mar 31 2020 11:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 120.00240 * 2 1 4 4 N 1.46491 * 109.47502 * 126.17252 * 3 2 1 5 5 C 1.37685 * 127.18470 * 84.64675 * 4 3 2 6 6 C 1.47284 * 126.49890 * 359.97438 * 5 4 3 7 7 N 1.37827 * 126.78839 * 354.13516 * 6 5 4 8 8 H 0.97003 * 126.46699 * 0.02569 * 7 6 5 9 9 C 1.35109 * 107.05899 * 180.24852 * 7 6 5 10 10 N 1.30606 * 109.04112 * 359.78110 * 9 7 6 11 11 C 1.33724 * 109.61188 * 359.97438 * 10 9 7 12 12 C 1.50700 * 126.06667 * 179.97438 * 11 10 9 13 13 N 1.31448 * 107.00003 * 179.70497 * 5 4 3 14 14 N 1.28503 * 109.93525 * 0.26560 * 13 5 4 15 15 C 1.31306 * 110.14241 * 0.02562 * 14 13 5 16 16 N 1.38481 * 126.35276 * 180.02562 * 15 14 13 17 17 C 1.46903 * 110.99679 * 248.80219 * 16 15 14 18 18 C 1.46898 * 111.00588 * 12.76125 * 16 15 14 19 19 H 1.09000 * 109.46579 * 54.99997 * 18 16 15 20 20 C 1.53001 * 109.46875 * 295.00254 * 18 16 15 21 21 C 1.50700 * 109.47202 * 174.99987 * 18 16 15 22 22 H 1.08001 * 119.99523 * 114.55860 * 21 18 16 23 23 C 1.37873 * 120.00009 * 294.55200 * 21 18 16 24 24 N 1.31515 * 119.99936 * 179.28607 * 23 21 18 25 25 Si 1.86794 * 120.00132 * 359.28917 * 23 21 18 26 26 H 1.48503 * 109.47164 * 91.45641 * 25 23 21 27 27 H 1.48506 * 109.47360 * 211.45185 * 25 23 21 28 28 H 1.48501 * 109.47341 * 331.45198 * 25 23 21 29 29 H 1.07997 * 119.99507 * 0.02562 * 1 2 3 30 30 H 1.07996 * 119.99718 * 180.02562 * 1 2 3 31 31 H 1.08007 * 119.99574 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46893 * 6.17287 * 3 2 1 33 33 H 1.08997 * 109.46627 * 246.17301 * 3 2 1 34 34 H 1.08000 * 125.47569 * 179.77288 * 9 7 6 35 35 H 1.09001 * 109.46765 * 90.03030 * 12 11 10 36 36 H 1.08996 * 109.46850 * 210.02658 * 12 11 10 37 37 H 1.09001 * 109.47285 * 330.03014 * 12 11 10 38 38 H 1.09008 * 109.46758 * 59.04004 * 17 16 15 39 39 H 1.09004 * 109.46854 * 179.03315 * 17 16 15 40 40 H 1.08995 * 109.47356 * 299.03579 * 17 16 15 41 41 H 1.08995 * 109.47164 * 294.73071 * 20 18 16 42 42 H 1.09000 * 109.47213 * 54.73261 * 20 18 16 43 43 H 1.08997 * 109.47005 * 174.73229 * 20 18 16 44 44 H 0.97001 * 120.00250 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0137 1.3204 1.1149 5 6 4.2862 0.7947 1.1311 6 6 4.9617 0.1011 0.0212 7 7 4.4095 -0.2470 -1.1927 8 1 3.4981 -0.0810 -1.4803 9 6 5.3759 -0.8675 -1.9043 10 7 6.4704 -0.9069 -1.1927 11 6 6.2579 -0.3210 -0.0096 12 6 7.2694 -0.1619 1.0961 13 7 4.7858 1.0342 2.3231 14 7 3.9232 1.6589 3.0423 15 6 2.8210 1.8565 2.3566 16 7 1.6782 2.4964 2.8062 17 6 0.5674 1.5467 2.9557 18 6 1.9344 3.2092 4.0649 19 1 2.7733 3.8922 3.9312 20 6 2.2693 2.1989 5.1640 21 6 0.7076 3.9911 4.4581 22 1 0.1650 3.7295 5.3545 23 6 0.2781 5.0404 3.6736 24 7 -0.8006 5.7138 4.0092 25 14 1.2281 5.5054 2.1340 26 1 0.6718 4.7721 0.9686 27 1 1.1092 6.9673 1.9015 28 1 2.6586 5.1467 2.3077 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3604 2.1306 0.1105 33 1 2.6048 1.4120 -0.9401 34 1 5.2616 -1.2669 -2.9012 35 1 7.8028 0.7800 0.9677 36 1 6.7582 -0.1617 2.0588 37 1 7.9787 -0.9888 1.0615 38 1 0.8492 0.7664 3.6628 39 1 -0.3126 2.0724 3.3263 40 1 0.3416 1.0967 1.9890 41 1 1.3975 1.5757 5.3626 42 1 3.0987 1.5705 4.8394 43 1 2.5505 2.7307 6.0729 44 1 -1.1030 6.4518 3.4571 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340258497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:51 Heat of formation + Delta-G solvation = 183.863194 kcal Electronic energy + Delta-G solvation = -27653.793244 eV Core-core repulsion = 24031.317500 eV Total energy + Delta-G solvation = -3622.475744 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.79275 -41.94453 -37.56375 -36.45441 -33.34811 -32.86782 -32.71917 -31.85986 -29.88554 -28.97100 -27.27870 -26.57244 -25.65723 -25.13486 -22.68946 -22.14798 -21.28452 -20.43835 -19.86597 -19.20090 -18.19911 -17.02842 -16.70126 -16.24580 -15.85535 -15.31383 -15.16795 -14.75409 -14.61047 -14.26036 -13.87790 -13.81315 -13.34215 -12.98350 -12.80432 -12.69401 -12.59020 -12.29954 -12.05191 -11.92614 -11.63731 -11.41052 -10.97098 -10.90633 -10.71260 -10.51394 -10.28925 -10.24844 -10.06507 -9.88107 -9.83743 -9.63296 -9.57387 -9.20862 -8.75644 -8.36157 -7.41843 -6.23721 -4.30523 1.16498 1.60152 2.37463 2.49995 2.67915 2.89878 3.27737 3.34054 3.35123 3.46716 4.15482 4.25163 4.33699 4.41011 4.45611 4.49866 4.68429 4.91072 5.12961 5.18748 5.21219 5.32004 5.43664 5.54059 5.78611 5.89287 5.96545 5.97886 6.04486 6.06092 6.10527 6.18094 6.22635 6.30636 6.48757 6.53105 6.60789 6.70963 6.75427 7.03554 7.07922 7.18533 7.44489 7.59129 7.81376 7.96843 8.38014 8.80164 9.07160 9.39884 10.85677 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017160 B = 0.004729 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.297211 B = 5919.699711 C = 6446.750333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.201 4.201 3 C 0.135 3.865 4 N -0.485 5.485 5 C 0.219 3.781 6 C 0.049 3.951 7 N -0.572 5.572 8 H 0.417 0.583 9 C 0.201 3.799 10 N -0.489 5.489 11 C 0.064 3.936 12 C -0.074 4.074 13 N -0.255 5.255 14 N -0.316 5.316 15 C 0.395 3.605 16 N -0.460 5.460 17 C 0.032 3.968 18 C 0.183 3.817 19 H 0.056 0.944 20 C -0.170 4.170 21 C -0.509 4.509 22 H 0.080 0.920 23 C 0.087 3.913 24 N -0.888 5.888 25 Si 0.903 3.097 26 H -0.281 1.281 27 H -0.301 1.301 28 H -0.268 1.268 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.213 0.787 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.102 0.898 40 H 0.052 0.948 41 H 0.040 0.960 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.754 -13.195 -13.421 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.220 4.220 3 C 0.011 3.989 4 N -0.182 5.182 5 C -0.046 4.046 6 C -0.066 4.066 7 N -0.179 5.179 8 H 0.257 0.743 9 C -0.083 4.083 10 N -0.209 5.209 11 C -0.069 4.069 12 C -0.132 4.132 13 N -0.096 5.096 14 N -0.161 5.161 15 C 0.041 3.959 16 N -0.186 5.186 17 C -0.115 4.115 18 C 0.081 3.919 19 H 0.074 0.926 20 C -0.229 4.229 21 C -0.548 4.548 22 H 0.098 0.902 23 C -0.118 4.118 24 N -0.524 5.524 25 Si 0.733 3.267 26 H -0.207 1.207 27 H -0.229 1.229 28 H -0.193 1.193 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.104 0.896 34 H 0.230 0.770 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.121 0.879 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.196 -12.958 -12.840 19.266 hybrid contribution -1.854 0.326 -1.635 2.493 sum 4.342 -12.633 -14.475 19.697 Atomic orbital electron populations 1.24100 0.95427 1.03207 0.95013 1.23095 0.96732 0.97486 1.04642 1.20963 0.91863 0.98377 0.87649 1.46435 1.12918 1.46543 1.12293 1.21103 0.83508 1.04271 0.95704 1.17650 0.93983 1.09192 0.85822 1.43494 1.14345 1.46587 1.13488 0.74259 1.25020 0.83767 0.99983 0.99520 1.70130 1.25507 1.21027 1.04216 1.20882 0.91838 0.99465 0.94679 1.20233 0.96014 1.01929 0.95052 1.74302 1.23249 1.12975 0.99081 1.74782 0.99929 1.18753 1.22674 1.23501 0.96178 0.93987 0.82239 1.60036 1.00034 1.22801 1.35689 1.22419 0.94966 0.94053 1.00047 1.19954 0.98666 0.91707 0.81588 0.92571 1.22426 1.00699 0.99926 0.99860 1.20965 1.10685 1.12887 1.10249 0.90202 1.25033 0.94257 0.95101 0.97435 1.69932 1.22964 1.20716 1.38792 0.86385 0.81380 0.75677 0.83289 1.20668 1.22917 1.19252 0.87213 0.87259 0.86895 0.86839 0.89610 0.77030 0.91110 0.88959 0.91336 0.95041 0.87940 0.92899 0.94115 0.91226 0.92811 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 12.40 29.01 0.36 -0.86 16 2 C -0.20 -1.97 8.46 -36.03 -0.30 -2.28 16 3 C 0.13 1.66 5.19 -5.20 -0.03 1.63 16 4 N -0.49 -8.01 2.82 -116.05 -0.33 -8.34 16 5 C 0.22 3.68 7.87 -153.75 -1.21 2.47 16 6 C 0.05 0.69 7.03 -82.17 -0.58 0.12 16 7 N -0.57 -5.74 5.86 -10.69 -0.06 -5.81 16 8 H 0.42 3.15 5.89 -40.82 -0.24 2.91 16 9 C 0.20 1.89 13.03 -90.23 -1.18 0.72 16 10 N -0.49 -6.38 11.21 -10.54 -0.12 -6.50 16 11 C 0.06 0.92 7.14 -82.45 -0.59 0.33 16 12 C -0.07 -0.98 10.06 36.01 0.36 -0.62 16 13 N -0.26 -4.93 10.34 32.51 0.34 -4.59 16 14 N -0.32 -6.68 8.96 30.34 0.27 -6.41 16 15 C 0.40 7.88 6.67 -318.68 -2.13 5.75 16 16 N -0.46 -9.61 2.87 -176.03 -0.50 -10.11 16 17 C 0.03 0.58 8.69 60.07 0.52 1.10 16 18 C 0.18 4.27 1.42 -68.87 -0.10 4.17 16 19 H 0.06 1.44 6.74 -51.93 -0.35 1.09 16 20 C -0.17 -3.60 8.32 37.16 0.31 -3.29 16 21 C -0.51 -13.38 7.74 -34.44 -0.27 -13.64 16 22 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 23 C 0.09 2.37 5.47 -17.82 -0.10 2.27 16 24 N -0.89 -25.51 13.96 55.43 0.77 -24.73 16 25 Si 0.90 22.02 26.39 -169.99 -4.49 17.53 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 27 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.27 -6.71 6.35 56.52 0.36 -6.35 16 29 H 0.11 1.00 7.72 -52.49 -0.41 0.60 16 30 H 0.11 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.11 1.07 8.04 -52.48 -0.42 0.65 16 32 H 0.11 1.55 7.75 -51.93 -0.40 1.14 16 33 H 0.09 0.83 6.31 -51.93 -0.33 0.51 16 34 H 0.21 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.32 6.52 -51.93 -0.34 0.98 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.03 0.56 6.69 -51.92 -0.35 0.22 16 39 H 0.10 2.05 6.96 -51.93 -0.36 1.69 16 40 H 0.05 0.81 4.09 -51.93 -0.21 0.59 16 41 H 0.04 0.82 6.80 -51.93 -0.35 0.47 16 42 H 0.07 1.47 5.35 -51.93 -0.28 1.19 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -32.63 348.15 -9.54 -42.17 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.75 Total: 3.68 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -4.92 Total: -2.14 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: 0.37 Total: -66.49 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.49 Total: 17.53 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.63 -9.54 -42.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340258497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.036 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds