Wall clock time and date at job start Tue Mar 31 2020 12:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47023 * 2 1 4 4 C 1.52998 * 109.47003 * 240.00340 * 2 1 3 5 5 C 1.53005 * 109.47003 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46991 * 60.00047 * 5 4 2 7 7 H 1.09007 * 109.46740 * 180.02562 * 6 5 4 8 8 O 1.45190 * 109.47424 * 59.99957 * 6 5 4 9 9 C 1.34229 * 117.00004 * 89.99974 * 8 6 5 10 10 O 1.20826 * 120.00115 * 359.97438 * 9 8 6 11 11 C 1.50702 * 119.99867 * 179.97438 * 9 8 6 12 12 H 1.08993 * 109.47339 * 299.99747 * 11 9 8 13 13 C 1.50696 * 109.47393 * 60.00245 * 11 9 8 14 14 H 1.08010 * 119.99847 * 34.24098 * 13 11 9 15 15 C 1.37873 * 120.00362 * 214.24325 * 13 11 9 16 16 N 1.31516 * 119.99818 * 6.39739 * 15 13 11 17 17 Si 1.86800 * 120.00352 * 186.39588 * 15 13 11 18 18 H 1.48497 * 109.46873 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46799 * 120.00119 * 17 15 13 20 20 H 1.48497 * 109.47249 * 239.99842 * 17 15 13 21 21 C 1.50704 * 109.46833 * 179.97438 * 11 9 8 22 22 C 1.38233 * 120.00122 * 293.86214 * 21 11 9 23 23 C 1.38240 * 120.00124 * 179.81075 * 22 21 11 24 24 C 1.38244 * 119.99599 * 0.42248 * 23 22 21 25 25 C 1.38233 * 120.00268 * 359.80814 * 24 23 22 26 26 C 1.38234 * 119.99942 * 114.13702 * 21 11 9 27 27 C 1.53005 * 109.47019 * 299.99601 * 6 5 4 28 28 H 1.09001 * 109.47232 * 300.00532 * 27 6 5 29 29 C 1.52998 * 109.46793 * 180.02562 * 27 6 5 30 30 C 1.52997 * 109.47030 * 120.00006 * 2 1 3 31 31 H 1.08992 * 109.47203 * 299.99688 * 1 2 3 32 32 H 1.09001 * 109.47131 * 59.99939 * 1 2 3 33 33 H 1.09001 * 109.47023 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47404 * 59.99889 * 4 2 1 35 35 H 1.09001 * 109.46953 * 299.99703 * 4 2 1 36 36 H 1.09001 * 109.47023 * 299.99660 * 5 4 2 37 37 H 1.09004 * 109.46757 * 179.97438 * 5 4 2 38 38 H 0.97003 * 119.99945 * 179.97438 * 16 15 13 39 39 H 1.07999 * 120.00187 * 0.02562 * 22 21 11 40 40 H 1.07993 * 120.00218 * 180.20637 * 23 22 21 41 41 H 1.07999 * 119.99639 * 179.79626 * 24 23 22 42 42 H 1.07992 * 120.00433 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.00094 * 359.97438 * 26 21 11 44 44 H 1.08998 * 109.47318 * 60.00873 * 29 27 6 45 45 H 1.09005 * 109.46522 * 180.02562 * 29 27 6 46 46 H 1.08992 * 109.47433 * 299.99891 * 29 27 6 47 47 H 1.09001 * 109.47222 * 60.00116 * 30 2 1 48 48 H 1.08992 * 109.47378 * 300.00199 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5701 -0.7206 -1.2496 6 6 4.0806 -1.4416 -0.0004 7 1 5.1706 -1.4408 -0.0004 8 8 3.5971 -2.8106 -0.0001 9 6 4.3707 -3.7302 -0.5982 10 8 5.4170 -3.4019 -1.1055 11 6 3.9342 -5.1721 -0.6368 12 1 3.8212 -5.5449 0.3811 13 6 2.6165 -5.2789 -1.3601 14 1 2.3982 -4.6169 -2.1852 15 6 1.6897 -6.2216 -0.9688 16 7 1.9001 -6.9418 0.1113 17 14 0.1350 -6.4760 -1.9727 18 1 0.1374 -5.5484 -3.1324 19 1 0.0847 -7.8776 -2.4606 20 1 -1.0525 -6.2045 -1.1235 21 6 4.9716 -5.9917 -1.3602 22 6 5.1969 -5.7873 -2.7086 23 6 6.1512 -6.5364 -3.3713 24 6 6.8741 -7.4960 -2.6874 25 6 6.6455 -7.7037 -1.3400 26 6 5.6939 -6.9518 -0.6765 27 6 3.5706 -0.7203 1.2489 28 1 3.9335 0.3075 1.2487 29 6 4.0816 -1.4409 2.4980 30 6 2.0400 -0.7212 1.2492 31 1 -0.3633 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6767 -0.2073 -2.1393 35 1 1.6767 -1.7489 -1.2493 36 1 3.9330 0.3072 -1.2498 37 1 3.9333 -1.2348 -2.1394 38 1 1.2478 -7.6048 0.3869 39 1 4.6298 -5.0400 -3.2437 40 1 6.3296 -6.3744 -4.4240 41 1 7.6174 -8.0835 -3.2058 42 1 7.2099 -8.4535 -0.8057 43 1 5.5150 -7.1143 0.3761 44 1 5.1716 -1.4401 2.4977 45 1 3.7179 -0.9273 3.3881 46 1 3.7190 -2.4688 2.4985 47 1 1.6767 -1.7489 1.2492 48 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001360576161.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:32 Heat of formation + Delta-G solvation = -99.369916 kcal Electronic energy + Delta-G solvation = -27805.370964 eV Core-core repulsion = 24209.568152 eV Total energy + Delta-G solvation = -3595.802812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.10410 -38.63558 -37.67148 -35.14744 -33.71696 -32.91964 -31.30652 -31.05123 -30.02228 -27.64488 -26.44262 -25.81185 -24.05089 -22.25502 -21.68117 -21.37546 -20.34632 -19.84864 -18.73144 -16.93773 -16.44823 -16.10679 -15.64019 -15.22973 -14.77972 -14.37325 -14.22824 -14.16560 -13.80389 -13.60712 -13.48553 -13.25627 -12.57879 -12.42980 -12.35564 -12.30738 -12.10274 -11.75483 -11.75040 -11.61644 -11.31081 -11.18802 -11.13737 -11.06319 -10.93665 -10.64802 -10.43331 -10.35084 -10.31017 -10.18063 -10.08336 -9.75127 -9.52817 -9.46554 -9.08271 -8.68551 -8.03278 -7.73427 -6.27142 -4.30799 2.27348 2.30499 3.20689 3.26551 3.30992 3.40393 3.69176 4.29389 4.74142 4.82423 4.87305 4.92916 5.10171 5.21899 5.31996 5.45838 5.49977 5.63457 5.65743 5.68325 5.72019 5.73549 5.83833 5.85543 5.93328 5.99486 6.02097 6.07936 6.12768 6.14663 6.22298 6.25733 6.36396 6.40482 6.46601 6.49802 6.52863 6.58147 6.61342 6.79106 6.81830 6.89738 7.10476 7.29101 7.35581 7.42540 7.60985 7.71461 7.86283 8.00075 8.67266 8.94644 9.32994 10.82508 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.011481 B = 0.005334 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.121482 B = 5248.260803 C = 6516.151086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.061 0.939 4 C -0.114 4.114 5 C -0.131 4.131 6 C 0.088 3.912 7 H 0.075 0.925 8 O -0.328 6.328 9 C 0.473 3.527 10 O -0.541 6.541 11 C 0.074 3.926 12 H 0.102 0.898 13 C -0.506 4.506 14 H 0.063 0.937 15 C 0.077 3.923 16 N -0.879 5.879 17 Si 0.898 3.102 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.020 4.020 22 C -0.085 4.085 23 C -0.134 4.134 24 C -0.145 4.145 25 C -0.131 4.131 26 C -0.117 4.117 27 C -0.083 4.083 28 H 0.077 0.923 29 C -0.149 4.149 30 C -0.108 4.108 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.267 0.733 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.842 9.348 1.283 9.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 H 0.079 0.921 4 C -0.152 4.152 5 C -0.169 4.169 6 C 0.032 3.968 7 H 0.093 0.907 8 O -0.244 6.244 9 C 0.319 3.681 10 O -0.431 6.431 11 C 0.055 3.945 12 H 0.119 0.881 13 C -0.544 4.544 14 H 0.081 0.919 15 C -0.128 4.128 16 N -0.514 5.514 17 Si 0.725 3.275 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.020 4.020 22 C -0.103 4.103 23 C -0.152 4.152 24 C -0.164 4.164 25 C -0.149 4.149 26 C -0.135 4.135 27 C -0.101 4.101 28 H 0.095 0.905 29 C -0.206 4.206 30 C -0.145 4.145 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.132 0.868 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.050 9.330 1.268 9.636 hybrid contribution -0.708 -0.189 -0.631 0.967 sum 1.342 9.141 0.637 9.261 Atomic orbital electron populations 1.21816 0.95483 1.02190 1.00893 1.21096 0.95303 0.98766 0.95500 0.92056 1.21554 0.94696 1.02186 0.96714 1.21882 0.96878 1.00043 0.98078 1.22537 0.98745 0.80509 0.94960 0.90748 1.86696 1.49795 1.16814 1.71114 1.24983 0.80430 0.89992 0.72690 1.90529 1.25153 1.82501 1.44963 1.17867 0.93554 0.82190 1.00872 0.88057 1.20574 0.97829 1.19262 1.16693 0.91856 1.24906 0.98153 0.95265 0.94467 1.69878 1.36272 1.23013 1.22275 0.86421 0.82393 0.78325 0.80333 1.19403 1.20701 1.20659 1.20038 0.92658 0.95414 0.93924 1.20849 0.96503 0.98451 0.94489 1.20967 0.97727 0.97462 0.99009 1.20836 1.01012 0.99727 0.94790 1.20917 0.99147 1.00093 0.94739 1.21006 0.95896 0.96913 0.99693 1.21214 0.96682 0.98416 0.93801 0.90467 1.21810 1.00484 1.01821 0.96496 1.21627 0.94058 1.02158 0.96702 0.93127 0.93128 0.92203 0.92616 0.90155 0.91415 0.91456 0.92328 0.87031 0.87428 0.87548 0.87353 0.86765 0.93115 0.92825 0.91345 0.90156 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.19 37.16 0.34 -1.38 16 2 C -0.09 -1.12 2.72 -90.62 -0.25 -1.36 16 3 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -1.67 5.06 -26.73 -0.14 -1.80 16 5 C -0.13 -1.99 5.65 -26.73 -0.15 -2.14 16 6 C 0.09 1.46 2.17 -26.73 -0.06 1.40 16 7 H 0.07 1.30 7.16 -51.92 -0.37 0.93 16 8 O -0.33 -6.69 7.79 -39.25 -0.31 -7.00 16 9 C 0.47 10.74 7.12 36.01 0.26 11.00 16 10 O -0.54 -12.76 14.64 -18.75 -0.27 -13.04 16 11 C 0.07 1.80 2.55 -94.07 -0.24 1.56 16 12 H 0.10 2.62 7.00 -51.93 -0.36 2.26 16 13 C -0.51 -12.97 7.59 -34.44 -0.26 -13.24 16 14 H 0.06 1.64 7.82 -52.48 -0.41 1.23 16 15 C 0.08 1.99 5.45 -17.82 -0.10 1.90 16 16 N -0.88 -23.53 12.78 55.43 0.71 -22.82 16 17 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 C -0.02 -0.46 4.30 -104.62 -0.45 -0.91 16 22 C -0.08 -1.87 8.31 -39.58 -0.33 -2.20 16 23 C -0.13 -2.57 10.05 -39.58 -0.40 -2.96 16 24 C -0.15 -2.63 10.05 -39.58 -0.40 -3.03 16 25 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 26 C -0.12 -2.51 9.67 -39.58 -0.38 -2.89 16 27 C -0.08 -1.13 2.55 -90.59 -0.23 -1.36 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 29 C -0.15 -2.01 9.05 37.16 0.34 -1.67 16 30 C -0.11 -1.46 4.35 -26.70 -0.12 -1.57 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.41 7.68 -51.93 -0.40 1.01 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.11 2.48 7.89 -52.49 -0.41 2.07 16 40 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.11 2.36 7.96 -52.49 -0.42 1.94 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 1.07 7.68 -51.93 -0.40 0.67 16 47 H 0.08 1.29 7.68 -51.93 -0.40 0.89 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -27.74 384.85 -10.28 -38.01 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -8.23 Total: 7.21 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -2.96 Total: -23.52 kcal Atomic # 7 Polarization: -23.53 SS G_CDS: 0.71 Total: -22.82 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.58 Total: -20.03 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -27.74 -10.28 -38.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360576161.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.355 kcal (2) G-P(sol) polarization free energy of solvation -27.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds