Wall clock time and date at job start Tue Mar 31 2020 12:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47253 * 2 1 4 4 C 1.53003 * 109.47121 * 240.00027 * 2 1 3 5 5 C 1.52999 * 109.47082 * 300.00131 * 4 2 1 6 6 C 1.52999 * 109.47254 * 299.99989 * 5 4 2 7 7 H 1.08998 * 109.47383 * 300.00438 * 6 5 4 8 8 O 1.45202 * 109.47649 * 179.97438 * 6 5 4 9 9 C 1.34231 * 116.99789 * 89.99495 * 8 6 5 10 10 O 1.20826 * 119.99902 * 0.02562 * 9 8 6 11 11 C 1.50702 * 119.99795 * 180.02562 * 9 8 6 12 12 H 1.09000 * 109.46855 * 300.00363 * 11 9 8 13 13 C 1.50700 * 109.46898 * 60.00640 * 11 9 8 14 14 H 1.07996 * 119.99897 * 235.33596 * 13 11 9 15 15 C 1.37876 * 120.00023 * 55.33315 * 13 11 9 16 16 N 1.31510 * 120.00346 * 1.99759 * 15 13 11 17 17 Si 1.86808 * 119.99823 * 181.99183 * 15 13 11 18 18 H 1.48499 * 109.46682 * 90.00329 * 17 15 13 19 19 H 1.48496 * 109.46911 * 209.99969 * 17 15 13 20 20 H 1.48502 * 109.46984 * 330.00307 * 17 15 13 21 21 C 1.50703 * 109.46982 * 180.02562 * 11 9 8 22 22 C 1.38234 * 119.99839 * 226.95324 * 21 11 9 23 23 C 1.38237 * 119.99788 * 180.32620 * 22 21 11 24 24 C 1.38234 * 119.99970 * 359.92445 * 23 22 21 25 25 C 1.38229 * 120.00215 * 0.06917 * 24 23 22 26 26 C 1.38235 * 119.99644 * 47.22456 * 21 11 9 27 27 C 1.53003 * 109.47067 * 60.00002 * 6 5 4 28 28 H 1.08997 * 109.47405 * 59.99964 * 27 6 5 29 29 C 1.53001 * 109.47216 * 180.02562 * 27 6 5 30 30 C 1.52999 * 109.46959 * 120.00195 * 2 1 3 31 31 H 1.08999 * 109.46835 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46748 * 299.99933 * 1 2 3 33 33 H 1.08993 * 109.46734 * 59.99835 * 1 2 3 34 34 H 1.08998 * 109.46663 * 180.02562 * 4 2 1 35 35 H 1.08993 * 109.47203 * 60.00426 * 4 2 1 36 36 H 1.09000 * 109.47041 * 180.02562 * 5 4 2 37 37 H 1.09003 * 109.47266 * 60.00015 * 5 4 2 38 38 H 0.96997 * 120.00490 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.00037 * 0.27635 * 22 21 11 40 40 H 1.07997 * 119.99693 * 179.97438 * 23 22 21 41 41 H 1.08005 * 119.99889 * 180.02562 * 24 23 22 42 42 H 1.07995 * 120.00199 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.00556 * 359.72469 * 26 21 11 44 44 H 1.08997 * 109.47256 * 59.99514 * 29 27 6 45 45 H 1.08998 * 109.47433 * 180.02562 * 29 27 6 46 46 H 1.09008 * 109.47076 * 300.00044 * 29 27 6 47 47 H 1.09003 * 109.47006 * 180.02562 * 30 2 1 48 48 H 1.09002 * 109.47286 * 299.99543 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.5300 -2.1637 -1.2493 6 6 2.0400 -2.8850 -0.0001 7 1 3.1300 -2.8850 0.0000 8 8 1.5555 -4.2538 0.0003 9 6 2.3284 -5.1740 -0.5978 10 8 3.3753 -4.8466 -1.1044 11 6 1.8904 -6.6154 -0.6373 12 1 1.7763 -6.9885 0.3804 13 6 0.5730 -6.7203 -1.3615 14 1 -0.2722 -7.1892 -0.8797 15 6 0.4467 -6.2176 -2.6392 16 7 1.4861 -5.6818 -3.2408 17 14 -1.2011 -6.2976 -3.5157 18 1 -1.9783 -5.0669 -3.2217 19 1 -0.9781 -6.4043 -4.9799 20 1 -1.9565 -7.4852 -3.0421 21 6 2.9278 -7.4360 -1.3595 22 6 2.5408 -8.3380 -2.3328 23 6 3.4918 -9.0957 -2.9905 24 6 4.8300 -8.9501 -2.6758 25 6 5.2170 -8.0480 -1.7026 26 6 4.2659 -7.2907 -1.0445 27 6 1.5300 -2.1638 1.2492 28 1 0.4400 -2.1637 1.2492 29 6 2.0405 -2.8847 2.4985 30 6 2.0400 -0.7213 1.2492 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3632 0.5138 -0.8899 34 1 3.1300 -0.7216 -1.2490 35 1 1.6768 -0.2074 -2.1392 36 1 1.8937 -2.6777 -2.1390 37 1 0.4400 -2.1637 -1.2493 38 1 1.3972 -5.3278 -4.1395 39 1 1.4953 -8.4515 -2.5789 40 1 3.1894 -9.8007 -3.7506 41 1 5.5730 -9.5417 -3.1899 42 1 6.2624 -7.9346 -1.4565 43 1 4.5683 -6.5860 -0.2841 44 1 3.1304 -2.8844 2.4982 45 1 1.6768 -2.3712 3.3885 46 1 1.6774 -3.9125 2.4987 47 1 3.1300 -0.7209 1.2495 48 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001360576162.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:36 Heat of formation + Delta-G solvation = -89.713179 kcal Electronic energy + Delta-G solvation = -28111.212371 eV Core-core repulsion = 24515.828306 eV Total energy + Delta-G solvation = -3595.384065 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.88151 -38.68838 -37.59365 -35.01659 -33.70332 -32.66195 -30.96625 -30.58414 -29.73214 -27.53346 -26.61154 -26.00219 -24.06469 -22.35171 -21.35453 -21.05612 -20.55281 -19.34111 -18.54399 -17.00960 -16.08474 -15.78697 -15.30398 -15.08935 -14.83932 -14.61990 -14.38154 -13.92955 -13.72154 -13.57226 -13.12270 -12.98365 -12.64748 -12.42846 -12.24686 -12.18753 -12.13067 -11.76677 -11.66505 -11.53514 -11.26565 -11.16176 -10.95665 -10.82610 -10.76334 -10.63362 -10.52715 -10.28128 -10.09258 -10.03259 -9.78959 -9.71207 -9.46226 -9.23522 -8.82822 -8.58032 -7.76039 -7.48718 -6.17068 -4.30552 2.46604 2.55680 3.21331 3.29998 3.31219 3.79957 3.97651 4.30602 4.81967 4.86270 4.92374 5.01277 5.12510 5.23536 5.35253 5.44079 5.60721 5.68284 5.71726 5.74511 5.79893 5.81849 5.88829 5.92370 5.97510 6.01347 6.06141 6.09304 6.15773 6.27753 6.30654 6.32424 6.39625 6.45736 6.53239 6.59951 6.61239 6.68458 6.75819 6.84254 6.92600 7.06583 7.15702 7.49073 7.58990 7.67594 7.69995 7.86834 8.10703 8.21610 8.69747 9.32853 9.40081 10.84492 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.005079 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.557998 B = 5511.179541 C = 6645.605090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 H 0.066 0.934 4 C -0.110 4.110 5 C -0.133 4.133 6 C 0.099 3.901 7 H 0.071 0.929 8 O -0.348 6.348 9 C 0.493 3.507 10 O -0.521 6.521 11 C 0.082 3.918 12 H 0.067 0.933 13 C -0.527 4.527 14 H 0.071 0.929 15 C 0.071 3.929 16 N -0.851 5.851 17 Si 0.891 3.109 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.270 1.270 21 C -0.020 4.020 22 C -0.060 4.060 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.102 4.102 27 C -0.088 4.088 28 H 0.081 0.919 29 C -0.146 4.146 30 C -0.105 4.105 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.266 0.734 39 H 0.130 0.870 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 6.227 6.589 9.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.147 4.147 5 C -0.171 4.171 6 C 0.043 3.957 7 H 0.089 0.911 8 O -0.266 6.266 9 C 0.337 3.663 10 O -0.409 6.409 11 C 0.063 3.937 12 H 0.085 0.915 13 C -0.565 4.565 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.484 5.484 17 Si 0.718 3.282 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.195 1.195 21 C -0.020 4.020 22 C -0.078 4.078 23 C -0.165 4.165 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.120 4.120 27 C -0.107 4.107 28 H 0.099 0.901 29 C -0.203 4.203 30 C -0.143 4.143 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.148 0.852 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.238 6.451 6.251 9.068 hybrid contribution -0.669 0.334 -0.986 1.237 sum 0.569 6.785 5.265 8.607 Atomic orbital electron populations 1.21957 0.95340 1.02623 1.01010 1.21134 0.96063 0.98737 0.95211 0.91559 1.21517 1.00497 0.95534 0.97188 1.21893 1.01508 0.94752 0.98909 1.22357 0.98825 0.80263 0.94216 0.91135 1.86586 1.51149 1.16958 1.71869 1.24323 0.80272 0.89271 0.72387 1.90485 1.25465 1.81900 1.43009 1.17567 0.94915 0.84377 0.96867 0.91521 1.20672 0.94924 1.41355 0.99505 0.91113 1.25060 0.96590 0.94553 0.97354 1.70037 1.28407 1.36205 1.13778 0.86589 0.83991 0.78860 0.78787 1.20378 1.21118 1.19476 1.19762 0.92647 0.94271 0.95341 1.21148 0.99866 0.93538 0.93278 1.21006 0.93421 1.01160 1.00893 1.20798 0.95719 1.00173 0.99296 1.20813 0.98179 0.98457 0.98694 1.20973 0.93250 0.97599 1.00188 1.21222 1.01508 0.93890 0.94072 0.90106 1.21788 1.00720 1.01282 0.96517 1.21592 1.00565 0.94585 0.97510 0.91514 0.93093 0.93031 0.92096 0.92022 0.90578 0.91333 0.92399 0.85221 0.87850 0.88074 0.87981 0.87581 0.93168 0.93011 0.91649 0.91980 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.50 37.16 0.32 -1.47 16 2 C -0.09 -1.12 3.20 -90.62 -0.29 -1.41 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -1.57 5.45 -26.73 -0.15 -1.72 16 5 C -0.13 -2.42 5.28 -26.73 -0.14 -2.56 16 6 C 0.10 1.84 1.88 -26.73 -0.05 1.79 16 7 H 0.07 1.40 7.16 -51.93 -0.37 1.03 16 8 O -0.35 -7.74 9.13 -39.26 -0.36 -8.10 16 9 C 0.49 11.99 5.53 36.01 0.20 12.19 16 10 O -0.52 -13.56 13.17 -18.75 -0.25 -13.81 16 11 C 0.08 1.98 2.87 -94.07 -0.27 1.71 16 12 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 13 C -0.53 -13.26 7.25 -34.44 -0.25 -13.51 16 14 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 15 C 0.07 1.82 4.00 -17.82 -0.07 1.75 16 16 N -0.85 -23.00 10.90 55.43 0.60 -22.40 16 17 Si 0.89 20.12 29.54 -169.99 -5.02 15.09 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 C -0.02 -0.46 4.51 -104.62 -0.47 -0.94 16 22 C -0.06 -1.39 8.21 -39.58 -0.33 -1.72 16 23 C -0.15 -3.01 10.05 -39.58 -0.40 -3.41 16 24 C -0.14 -2.75 10.05 -39.59 -0.40 -3.14 16 25 C -0.14 -2.88 10.05 -39.58 -0.40 -3.28 16 26 C -0.10 -2.27 8.22 -39.58 -0.33 -2.60 16 27 C -0.09 -1.29 2.19 -90.62 -0.20 -1.49 16 28 H 0.08 1.20 6.43 -51.93 -0.33 0.87 16 29 C -0.15 -1.99 9.05 37.16 0.34 -1.66 16 30 C -0.10 -1.27 4.73 -26.73 -0.13 -1.40 16 31 H 0.07 0.89 4.81 -51.93 -0.25 0.64 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.07 1.26 6.43 -51.93 -0.33 0.92 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.13 3.09 6.03 -52.49 -0.32 2.77 16 40 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.10 1.65 8.06 -52.48 -0.42 1.22 16 42 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 43 H 0.11 2.33 7.00 -52.49 -0.37 1.96 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.98 7.68 -51.92 -0.40 0.59 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -28.26 370.47 -10.28 -38.54 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -7.84 Total: 7.96 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -3.01 Total: -22.87 kcal Atomic # 7 Polarization: -23.00 SS G_CDS: 0.60 Total: -22.40 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.61 Total: -21.91 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.26 -10.28 -38.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360576162.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.171 kcal (2) G-P(sol) polarization free energy of solvation -28.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds