Wall clock time and date at job start Tue Mar 31 2020 11:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47176 * 2 1 4 4 N 1.46502 * 109.46946 * 178.47346 * 3 2 1 5 5 C 1.37614 * 127.16078 * 84.90025 * 4 3 2 6 6 C 1.47747 * 126.46773 * 359.97438 * 5 4 3 7 7 C 1.39746 * 120.13579 * 179.73670 * 6 5 4 8 8 N 1.31913 * 119.84611 * 179.97438 * 7 6 5 9 9 C 1.32279 * 120.11485 * 0.02562 * 8 7 6 10 10 C 1.38397 * 120.27604 * 359.97438 * 9 8 7 11 11 N 1.32034 * 120.15628 * 0.02562 * 10 9 8 12 12 N 1.31294 * 107.06287 * 179.73577 * 5 4 3 13 13 N 1.28517 * 109.90772 * 0.24052 * 12 5 4 14 14 C 1.31491 * 110.07347 * 359.97438 * 13 12 5 15 15 N 1.38275 * 126.36820 * 180.02562 * 14 13 12 16 16 C 1.46904 * 111.00081 * 294.58675 * 15 14 13 17 17 C 1.46895 * 111.00201 * 58.54390 * 15 14 13 18 18 H 1.09002 * 109.47144 * 300.00220 * 17 15 14 19 19 C 1.52996 * 109.47396 * 59.99968 * 17 15 14 20 20 C 1.50700 * 109.47501 * 180.02562 * 17 15 14 21 21 H 1.08001 * 119.99718 * 359.97438 * 20 17 15 22 22 C 1.37882 * 120.00231 * 180.02562 * 20 17 15 23 23 N 1.31519 * 119.99747 * 359.97438 * 22 20 17 24 24 Si 1.86792 * 120.00038 * 179.97438 * 22 20 17 25 25 H 1.48511 * 109.47263 * 89.99932 * 24 22 20 26 26 H 1.48501 * 109.47185 * 209.99727 * 24 22 20 27 27 H 1.48502 * 109.47363 * 330.00276 * 24 22 20 28 28 H 1.09004 * 109.46906 * 60.00326 * 1 2 3 29 29 H 1.08994 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46821 * 300.00502 * 1 2 3 31 31 H 1.08999 * 109.47456 * 239.99803 * 2 1 3 32 32 H 1.09004 * 109.46906 * 119.99674 * 2 1 3 33 33 H 1.08998 * 109.47175 * 58.46732 * 3 2 1 34 34 H 1.09004 * 109.46851 * 298.46791 * 3 2 1 35 35 H 1.08003 * 120.08136 * 0.02562 * 7 6 5 36 36 H 1.07996 * 119.86038 * 180.02562 * 9 8 7 37 37 H 1.07995 * 119.92544 * 180.02562 * 10 9 8 38 38 H 1.09004 * 109.46590 * 66.12389 * 16 15 14 39 39 H 1.08996 * 109.47485 * 186.12127 * 16 15 14 40 40 H 1.08992 * 109.47056 * 306.12633 * 16 15 14 41 41 H 1.09005 * 109.47524 * 300.00491 * 19 17 15 42 42 H 1.08997 * 109.47472 * 59.99969 * 19 17 15 43 43 H 1.08999 * 109.47817 * 180.02562 * 19 17 15 44 44 H 0.97000 * 119.99456 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5046 1.4426 0.0368 5 6 4.3630 1.3355 -1.0334 6 6 3.9821 1.1964 -2.4542 7 6 4.9690 1.1030 -3.4392 8 7 4.6225 0.9785 -4.7059 9 6 3.3441 0.9425 -5.0438 10 6 2.3627 1.0346 -4.0724 11 7 2.6974 1.1596 -2.8012 12 7 5.5843 1.3855 -0.5542 13 7 5.5480 1.5096 0.7245 14 6 4.3006 1.5469 1.1390 15 7 3.8753 1.6736 2.4485 16 6 4.2593 0.4990 3.2428 17 6 4.3913 2.9092 3.0525 18 1 5.4812 2.8925 3.0391 19 6 3.8900 4.1148 2.2551 20 6 3.9086 3.0121 4.4764 21 1 3.2807 2.2373 4.8910 22 6 4.2675 4.0960 5.2494 23 7 5.0317 5.0397 4.7443 24 14 3.6685 4.2239 7.0141 25 1 4.6482 3.5695 7.9182 26 1 3.5295 5.6545 7.3872 27 1 2.3515 3.5493 7.1400 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6545 1.9642 0.8759 34 1 1.6993 1.9484 -0.9035 35 1 6.0130 1.1319 -3.1640 36 1 3.0651 0.8400 -6.0821 37 1 1.3208 1.0042 -4.3546 38 1 5.3453 0.4567 3.3271 39 1 3.8204 0.5738 4.2377 40 1 3.8974 -0.4049 2.7530 41 1 4.2395 4.0402 1.2253 42 1 2.8002 4.1316 2.2685 43 1 4.2733 5.0317 2.7030 44 1 5.2838 5.8023 5.2881 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417511447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:10 Heat of formation + Delta-G solvation = 140.362154 kcal Electronic energy + Delta-G solvation = -27032.449991 eV Core-core repulsion = 23408.087900 eV Total energy + Delta-G solvation = -3624.362091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.63263 -41.07402 -37.13010 -36.02995 -34.51115 -33.08163 -32.62609 -32.14380 -29.51857 -28.92512 -26.78654 -25.70959 -24.85470 -24.79825 -24.27192 -22.15854 -21.81356 -20.84676 -19.55313 -17.64897 -17.36202 -16.89518 -16.58156 -16.23623 -15.76744 -15.28135 -15.08867 -14.80881 -14.55219 -14.31465 -13.74747 -13.46025 -13.23526 -13.04912 -12.49851 -12.35389 -12.27755 -11.91757 -11.77444 -11.62639 -11.51192 -11.25715 -11.18039 -10.98545 -10.86874 -10.78989 -10.42321 -10.35898 -10.21243 -10.19506 -10.05673 -9.69094 -9.40525 -9.12984 -8.56344 -8.34584 -7.80214 -6.10862 -4.17787 0.24294 0.80438 2.15180 2.50995 3.06741 3.25892 3.32804 3.35246 3.46096 3.61340 3.98366 4.15582 4.28922 4.43338 4.55349 4.79210 4.89725 4.91558 4.93463 5.21005 5.23298 5.28515 5.32127 5.58698 5.60692 5.70014 5.72008 5.89142 5.95886 6.02726 6.06733 6.21628 6.25910 6.39728 6.54624 6.68131 6.76238 6.89223 6.95996 7.05915 7.31650 7.45326 7.58535 7.69100 7.85646 8.12991 8.38111 8.85259 8.99066 9.47257 10.96092 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020099 B = 0.003671 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.754845 B = 7624.826139 C = 8261.868680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.115 3.885 4 N -0.446 5.446 5 C 0.182 3.818 6 C 0.172 3.828 7 C 0.093 3.907 8 N -0.432 5.432 9 C 0.045 3.955 10 C 0.058 3.942 11 N -0.434 5.434 12 N -0.254 5.254 13 N -0.311 5.311 14 C 0.400 3.600 15 N -0.473 5.473 16 C 0.051 3.949 17 C 0.225 3.775 18 H 0.024 0.976 19 C -0.131 4.131 20 C -0.512 4.512 21 H 0.067 0.933 22 C 0.063 3.937 23 N -0.887 5.887 24 Si 0.901 3.099 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.273 1.273 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.183 0.817 36 H 0.172 0.828 37 H 0.174 0.826 38 H 0.037 0.963 39 H 0.091 0.909 40 H 0.043 0.957 41 H 0.001 0.999 42 H 0.032 0.968 43 H 0.093 0.907 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.821 -9.130 -15.789 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C -0.007 4.007 4 N -0.136 5.136 5 C -0.082 4.082 6 C 0.031 3.969 7 C -0.070 4.070 8 N -0.146 5.146 9 C -0.115 4.115 10 C -0.103 4.103 11 N -0.150 5.150 12 N -0.099 5.099 13 N -0.157 5.157 14 C 0.045 3.955 15 N -0.201 5.201 16 C -0.096 4.096 17 C 0.121 3.879 18 H 0.041 0.959 19 C -0.190 4.190 20 C -0.551 4.551 21 H 0.085 0.915 22 C -0.139 4.139 23 N -0.525 5.525 24 Si 0.729 3.271 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.198 1.198 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.200 0.800 36 H 0.189 0.811 37 H 0.191 0.809 38 H 0.056 0.944 39 H 0.110 0.890 40 H 0.062 0.938 41 H 0.020 0.980 42 H 0.052 0.948 43 H 0.112 0.888 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.790 -8.890 -15.645 19.608 hybrid contribution -1.027 0.215 0.885 1.373 sum -8.817 -8.674 -14.760 19.257 Atomic orbital electron populations 1.21628 0.94357 1.01900 1.02245 1.21733 0.96727 0.95677 1.02441 1.22029 0.74548 0.98925 1.05231 1.46444 1.08860 1.52512 1.05827 1.21667 0.87519 1.11552 0.87503 1.19112 0.90279 0.97614 0.89904 1.23790 1.01688 0.94094 0.87388 1.68559 1.19196 1.08409 1.18404 1.23866 0.89209 0.96616 1.01847 1.23720 1.01912 0.96365 0.88275 1.68415 1.17715 1.09234 1.19665 1.74265 1.16582 1.15450 1.03639 1.74841 1.16966 1.21135 1.02783 1.22856 0.85049 0.97877 0.89700 1.59216 1.59331 1.07062 0.94482 1.22210 0.99733 0.89224 0.98458 1.19461 0.94453 0.81091 0.92934 0.95868 1.21824 0.99122 1.02634 0.95376 1.21033 1.31972 1.07197 0.94890 0.91479 1.24916 0.94909 0.95423 0.98686 1.69900 1.35660 1.10437 1.36542 0.86447 0.79149 0.77281 0.84234 1.20577 1.21197 1.19785 0.92422 0.92461 0.92116 0.91782 0.91590 0.87963 0.88101 0.79982 0.81102 0.80895 0.94417 0.89019 0.93789 0.98047 0.94848 0.88841 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.13 -1.54 6.26 -26.73 -0.17 -1.71 16 3 C 0.12 1.65 5.49 -4.04 -0.02 1.63 16 4 N -0.45 -7.88 2.83 -114.73 -0.32 -8.20 16 5 C 0.18 3.16 7.83 -153.74 -1.20 1.95 16 6 C 0.17 2.40 6.75 -82.85 -0.56 1.84 16 7 C 0.09 1.16 10.89 -16.95 -0.18 0.98 16 8 N -0.43 -4.84 10.49 -12.72 -0.13 -4.97 16 9 C 0.04 0.36 11.21 -17.30 -0.19 0.17 16 10 C 0.06 0.48 11.22 -17.41 -0.20 0.28 16 11 N -0.43 -5.11 7.78 -9.67 -0.08 -5.19 16 12 N -0.25 -5.04 11.88 32.58 0.39 -4.66 16 13 N -0.31 -6.91 12.10 30.28 0.37 -6.54 16 14 C 0.40 8.30 5.01 -319.11 -1.60 6.70 16 15 N -0.47 -10.17 4.61 -176.14 -0.81 -10.98 16 16 C 0.05 0.99 9.14 60.07 0.55 1.54 16 17 C 0.22 5.65 1.99 -68.87 -0.14 5.51 16 18 H 0.02 0.67 8.07 -51.93 -0.42 0.25 16 19 C -0.13 -3.27 8.84 37.16 0.33 -2.94 16 20 C -0.51 -13.39 7.95 -34.44 -0.27 -13.67 16 21 H 0.07 1.70 6.40 -52.49 -0.34 1.36 16 22 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 23 N -0.89 -24.84 11.32 55.43 0.63 -24.22 16 24 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.79 7.78 -51.93 -0.40 0.39 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 1.57 8.11 -51.93 -0.42 1.15 16 34 H 0.10 1.34 6.61 -51.93 -0.34 1.00 16 35 H 0.18 2.20 7.87 -52.48 -0.41 1.78 16 36 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.75 6.31 -51.93 -0.33 1.42 16 40 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 41 H 0.00 0.01 7.22 -51.93 -0.38 -0.36 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 44 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -31.15 365.46 -9.15 -40.30 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.29 Total: 0.54 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -3.38 Total: 2.88 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: 0.04 Total: -64.76 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.15 -9.15 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417511447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.660 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds