Wall clock time and date at job start Tue Mar 31 2020 12:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47209 * 2 1 4 4 C 1.52996 * 109.47251 * 239.99676 * 2 1 3 5 5 C 1.53002 * 109.47251 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.47150 * 59.99975 * 5 4 2 7 7 H 1.08998 * 109.46780 * 60.00085 * 6 5 4 8 8 C 1.50696 * 109.47005 * 180.02562 * 6 5 4 9 9 O 1.20830 * 119.99574 * 120.00166 * 8 6 5 10 10 O 1.34225 * 120.00402 * 299.99580 * 8 6 5 11 11 C 1.45199 * 117.00100 * 180.02562 * 10 8 6 12 12 C 1.50701 * 109.46755 * 180.02562 * 11 10 8 13 13 C 1.38644 * 119.74451 * 269.72824 * 12 11 10 14 14 C 1.37625 * 120.24490 * 179.72739 * 13 12 11 15 15 C 1.40714 * 119.74384 * 0.52339 * 14 13 12 16 16 C 1.41397 * 120.24550 * 179.73218 * 15 14 13 17 17 H 1.07997 * 120.00049 * 204.41199 * 16 15 14 18 18 C 1.39939 * 120.00125 * 24.40135 * 16 15 14 19 19 N 1.30831 * 120.00030 * 17.84882 * 18 16 15 20 20 Si 1.86802 * 120.00476 * 197.85172 * 18 16 15 21 21 H 1.48502 * 109.46742 * 89.99998 * 20 18 16 22 22 H 1.48493 * 109.47373 * 210.00050 * 20 18 16 23 23 H 1.48499 * 109.46594 * 330.00504 * 20 18 16 24 24 C 1.40721 * 119.51404 * 359.74841 * 15 14 13 25 25 C 1.37618 * 119.74448 * 0.02562 * 24 15 14 26 26 C 1.53003 * 109.46893 * 300.00355 * 6 5 4 27 27 C 1.52993 * 109.47350 * 59.99916 * 26 6 5 28 28 H 1.08998 * 109.47331 * 59.99652 * 27 26 6 29 29 C 1.53003 * 109.47350 * 180.02562 * 27 26 6 30 30 H 1.08997 * 109.47397 * 300.00234 * 1 2 3 31 31 H 1.09000 * 109.46580 * 60.00351 * 1 2 3 32 32 H 1.08998 * 109.46710 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47670 * 299.99911 * 4 2 1 34 34 H 1.09000 * 109.47350 * 60.00444 * 4 2 1 35 35 H 1.08997 * 109.47397 * 180.02562 * 5 4 2 36 36 H 1.08998 * 109.47209 * 300.00324 * 5 4 2 37 37 H 1.08997 * 109.47405 * 300.00457 * 11 10 8 38 38 H 1.08999 * 109.46905 * 60.00852 * 11 10 8 39 39 H 1.07991 * 119.87765 * 359.97438 * 13 12 11 40 40 H 1.07999 * 120.12962 * 180.28081 * 14 13 12 41 41 H 0.96998 * 120.00288 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.12658 * 180.02562 * 24 15 14 43 43 H 1.07995 * 119.87925 * 179.97438 * 25 24 15 44 44 H 1.08999 * 109.46838 * 299.99896 * 26 6 5 45 45 H 1.08999 * 109.46999 * 180.02562 * 26 6 5 46 46 H 1.08999 * 109.46838 * 59.99980 * 29 27 26 47 47 H 1.08993 * 109.47345 * 179.97438 * 29 27 26 48 48 H 1.09002 * 109.46750 * 299.99863 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5701 -0.7219 -1.2488 6 6 4.0796 -1.4434 0.0005 7 1 3.7158 -2.4709 0.0003 8 6 5.5865 -1.4434 0.0011 9 8 6.1902 -0.9204 0.9077 10 8 6.2581 -2.0244 -1.0054 11 6 7.7081 -1.9869 -0.9386 12 6 8.2846 -2.6823 -2.1449 13 6 8.5523 -4.0417 -2.0926 14 6 9.0736 -4.6883 -3.1900 15 6 9.3450 -3.9622 -4.3644 16 6 9.8859 -4.6148 -5.4962 17 1 10.4498 -4.0523 -6.2256 18 6 9.6907 -5.9894 -5.6711 19 7 8.7440 -6.6050 -5.0104 20 14 10.7817 -6.9455 -6.8479 21 1 11.9679 -7.4590 -6.1166 22 1 10.0182 -8.0858 -7.4152 23 1 11.2266 -6.0518 -7.9472 24 6 9.0746 -2.5818 -4.4041 25 6 8.5490 -1.9569 -3.2963 26 6 3.5694 -0.7221 1.2497 27 6 2.0395 -0.7216 1.2493 28 1 1.6758 -1.7491 1.2491 29 6 1.5294 0.0003 2.4982 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6768 -1.7490 -1.2492 34 1 1.6768 -0.2075 -2.1392 35 1 3.9334 -1.2353 -2.1390 36 1 3.9338 0.3057 -1.2486 37 1 8.0444 -0.9502 -0.9221 38 1 8.0433 -2.4921 -0.0329 39 1 8.3474 -4.5959 -1.1887 40 1 9.2772 -5.7481 -3.1487 41 1 8.6084 -7.5577 -5.1319 42 1 9.2787 -2.0150 -5.3005 43 1 8.3409 -0.8975 -3.3243 44 1 3.9331 0.3054 1.2498 45 1 3.9328 -1.2359 2.1397 46 1 1.8931 1.0278 2.4979 47 1 0.4395 0.0011 2.4977 48 1 1.8924 -0.5134 3.3884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435687524.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:00 Heat of formation + Delta-G solvation = -112.461161 kcal Electronic energy + Delta-G solvation = -25820.549398 eV Core-core repulsion = 22224.178907 eV Total energy + Delta-G solvation = -3596.370491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.50787 -38.89030 -37.63687 -36.00321 -33.88552 -33.45577 -32.21213 -30.76957 -29.37007 -27.90691 -27.22984 -26.09169 -23.93127 -22.53467 -21.93579 -21.08493 -20.15825 -20.01214 -19.85254 -17.39508 -17.19919 -16.30776 -16.05232 -15.38910 -14.99001 -14.80076 -14.53328 -14.30952 -14.18212 -13.87809 -13.66199 -13.12232 -12.94379 -12.65749 -12.42467 -12.22206 -12.15940 -12.04992 -12.02505 -11.96034 -11.75890 -11.59599 -11.20018 -11.15043 -11.08449 -10.99491 -10.81014 -10.72773 -10.48225 -10.44366 -10.14558 -10.13403 -9.96349 -9.66777 -9.46351 -9.22766 -7.56295 -7.44996 -6.86573 -4.46517 2.46623 2.50057 2.96551 3.00409 3.03500 3.05561 3.41115 3.85562 4.41630 4.44087 4.46676 4.61519 4.77801 4.85780 5.08086 5.15369 5.21975 5.24443 5.34808 5.37559 5.47542 5.57501 5.60555 5.62375 5.62722 5.68422 5.73768 5.75012 5.80756 5.85628 5.99138 6.02209 6.05687 6.11910 6.15477 6.19042 6.25579 6.31448 6.32885 6.86472 6.92942 6.97688 7.18480 7.26693 7.51695 7.74202 7.95817 8.01261 8.13595 8.19283 8.53998 8.78627 8.86839 10.07225 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.023406 B = 0.002341 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.967180 B =11956.937971 C =12456.177325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.112 4.112 6 C -0.081 4.081 7 H 0.105 0.895 8 C 0.458 3.542 9 O -0.522 6.522 10 O -0.348 6.348 11 C 0.135 3.865 12 C -0.234 4.234 13 C -0.076 4.076 14 C -0.170 4.170 15 C 0.118 3.882 16 C -0.456 4.456 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.785 5.785 20 Si 0.911 3.089 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.230 4.230 25 C -0.064 4.064 26 C -0.097 4.097 27 C -0.086 4.086 28 H 0.072 0.928 29 C -0.148 4.148 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.283 0.717 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.054 0.946 47 H 0.058 0.942 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.682 8.180 8.884 18.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.100 4.100 7 H 0.123 0.877 8 C 0.302 3.698 9 O -0.412 6.412 10 O -0.264 6.264 11 C 0.063 3.937 12 C -0.236 4.236 13 C -0.095 4.095 14 C -0.190 4.190 15 C 0.115 3.885 16 C -0.485 4.485 17 H 0.098 0.902 18 C -0.144 4.144 19 N -0.410 5.410 20 Si 0.735 3.265 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.249 4.249 25 C -0.082 4.082 26 C -0.135 4.135 27 C -0.105 4.105 28 H 0.090 0.910 29 C -0.205 4.205 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.138 0.862 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.572 8.088 9.146 18.255 hybrid contribution 0.569 -0.535 -0.462 0.908 sum -13.003 7.552 8.684 17.364 Atomic orbital electron populations 1.21889 0.95298 1.01824 1.01598 1.21221 0.95416 0.99734 0.94484 0.91123 1.21598 0.94627 1.01111 0.97641 1.21521 0.95938 1.00816 0.96648 1.21083 0.87832 1.02943 0.98132 0.87666 1.23703 0.91528 0.74782 0.79829 1.90608 1.70862 1.43088 1.36652 1.86721 1.23907 1.70142 1.45657 1.21711 0.74591 0.99670 0.97712 1.18686 1.14542 0.94624 0.95721 1.20542 0.98660 0.92877 0.97384 1.21298 1.05489 1.00114 0.92065 1.17688 0.87531 0.90991 0.92281 1.19679 1.29504 0.92828 1.06506 0.90163 1.25974 0.94049 0.98238 0.96160 1.69831 1.24096 1.11539 1.35522 0.86269 0.80533 0.79168 0.80550 1.19158 1.20211 1.18513 1.20963 1.10574 0.95826 0.97583 1.20384 0.97957 0.97050 0.92848 1.21484 0.94565 1.01341 0.96103 1.21168 0.94603 0.99937 0.94744 0.90976 1.21870 1.00958 1.00534 0.97168 0.92460 0.92813 0.92698 0.91527 0.91400 0.90023 0.91544 0.92226 0.92162 0.89363 0.86233 0.90643 0.88728 0.89347 0.91081 0.91120 0.92678 0.92328 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.84 37.16 0.33 -0.69 16 2 C -0.09 -0.72 2.25 -90.62 -0.20 -0.93 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -0.99 5.20 -26.73 -0.14 -1.13 16 5 C -0.11 -1.24 5.14 -26.73 -0.14 -1.37 16 6 C -0.08 -0.98 2.63 -91.77 -0.24 -1.23 16 7 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 8 C 0.46 7.51 7.25 36.00 0.26 7.78 16 9 O -0.52 -9.63 15.73 -18.75 -0.29 -9.92 16 10 O -0.35 -6.53 10.11 -39.25 -0.40 -6.93 16 11 C 0.14 2.63 5.58 36.01 0.20 2.83 16 12 C -0.23 -5.22 5.54 -104.32 -0.58 -5.80 16 13 C -0.08 -1.79 9.67 -39.66 -0.38 -2.17 16 14 C -0.17 -4.38 8.70 -38.87 -0.34 -4.72 16 15 C 0.12 3.10 5.58 -106.82 -0.60 2.50 16 16 C -0.46 -11.84 9.05 -37.74 -0.34 -12.18 16 17 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 18 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 19 N -0.79 -19.86 10.95 55.55 0.61 -19.25 16 20 Si 0.91 18.16 29.60 -169.99 -5.03 13.13 16 21 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 24 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 25 C -0.06 -1.44 9.67 -39.66 -0.38 -1.82 16 26 C -0.10 -1.04 3.77 -26.73 -0.10 -1.14 16 27 C -0.09 -0.72 2.25 -90.62 -0.20 -0.93 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 C -0.15 -1.10 8.84 37.16 0.33 -0.77 16 30 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 38 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 39 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 40 H 0.12 3.15 6.15 -52.49 -0.32 2.83 16 41 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 42 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 43 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 45 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.38 6.42 -51.93 -0.33 0.04 16 48 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 383.86 15.07 5.78 5.78 Total: -1.00 -27.89 383.86 -10.46 -38.35 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -8.14 Total: 4.84 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -3.00 Total: -26.00 kcal Atomic # 7 Polarization: -19.86 SS G_CDS: 0.61 Total: -19.25 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.69 Total: -16.85 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -27.89 -10.46 -38.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435687524.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.109 kcal (2) G-P(sol) polarization free energy of solvation -27.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds