Wall clock time and date at job start Tue Mar 31 2020 12:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47095 * 2 1 4 4 C 1.53004 * 109.47031 * 240.00084 * 2 1 3 5 5 C 1.52995 * 109.47246 * 300.00227 * 4 2 1 6 6 C 1.53002 * 109.46985 * 299.99707 * 5 4 2 7 7 H 1.08995 * 109.47413 * 300.00403 * 6 5 4 8 8 C 1.50702 * 109.46887 * 180.02562 * 6 5 4 9 9 O 1.20830 * 119.99796 * 239.99771 * 8 6 5 10 10 O 1.34224 * 120.00272 * 60.00581 * 8 6 5 11 11 C 1.45201 * 117.00304 * 179.97438 * 10 8 6 12 12 C 1.50699 * 109.47115 * 179.97438 * 11 10 8 13 13 C 1.38635 * 119.74758 * 269.72433 * 12 11 10 14 14 C 1.37616 * 120.24934 * 179.72099 * 13 12 11 15 15 C 1.40719 * 119.74319 * 0.53362 * 14 13 12 16 16 C 1.41393 * 120.24527 * 179.72475 * 15 14 13 17 17 H 1.08006 * 120.00308 * 155.30566 * 16 15 14 18 18 C 1.39945 * 119.99803 * 335.30932 * 16 15 14 19 19 N 1.30822 * 120.00262 * 342.22784 * 18 16 15 20 20 Si 1.86808 * 119.99815 * 162.23381 * 18 16 15 21 21 H 1.48504 * 109.46880 * 94.66097 * 20 18 16 22 22 H 1.48499 * 109.46838 * 214.65973 * 20 18 16 23 23 H 1.48491 * 109.46944 * 334.66187 * 20 18 16 24 24 C 1.40718 * 119.51121 * 359.73912 * 15 14 13 25 25 C 1.37614 * 119.74269 * 0.02562 * 24 15 14 26 26 C 1.53008 * 109.46795 * 60.00425 * 6 5 4 27 27 C 1.52995 * 109.47007 * 299.99561 * 26 6 5 28 28 H 1.08999 * 109.47398 * 179.97438 * 27 26 6 29 29 C 1.53002 * 109.47569 * 300.00580 * 27 26 6 30 30 H 1.09000 * 109.47118 * 299.99710 * 1 2 3 31 31 H 1.09005 * 109.46836 * 60.00052 * 1 2 3 32 32 H 1.09005 * 109.46997 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46732 * 59.99954 * 4 2 1 34 34 H 1.08995 * 109.46824 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47035 * 179.97438 * 5 4 2 36 36 H 1.09005 * 109.47456 * 60.00036 * 5 4 2 37 37 H 1.09003 * 109.46809 * 299.99640 * 11 10 8 38 38 H 1.08996 * 109.46954 * 59.99727 * 11 10 8 39 39 H 1.08001 * 119.87323 * 359.97438 * 13 12 11 40 40 H 1.07997 * 120.13252 * 180.27687 * 14 13 12 41 41 H 0.96995 * 120.00254 * 180.02562 * 19 18 16 42 42 H 1.07994 * 120.12800 * 180.02562 * 24 15 14 43 43 H 1.08001 * 119.87361 * 179.97438 * 25 24 15 44 44 H 1.09003 * 109.46637 * 180.02562 * 26 6 5 45 45 H 1.08995 * 109.47158 * 59.99822 * 26 6 5 46 46 H 1.08993 * 109.47619 * 180.02562 * 29 27 26 47 47 H 1.09001 * 109.46536 * 300.00150 * 29 27 26 48 48 H 1.08999 * 109.47328 * 59.99262 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0002 7 1 3.1300 -2.8850 -0.0001 8 6 1.5382 -4.3060 -0.0006 9 8 0.8435 -4.7016 0.9055 10 8 1.8630 -5.1322 -1.0073 11 6 1.3447 -6.4870 -0.9416 12 6 1.8092 -7.2616 -2.1480 13 6 1.0351 -7.2728 -3.2980 14 6 1.4521 -7.9720 -4.4076 15 6 2.6638 -8.6864 -4.3678 16 6 3.0996 -9.4131 -5.4997 17 1 4.1508 -9.6197 -5.6371 18 6 2.1688 -9.8646 -6.4422 19 7 0.9005 -9.9319 -6.1287 20 14 2.7375 -10.3716 -8.1479 21 1 2.9610 -11.8393 -8.1792 22 1 1.6985 -10.0077 -9.1445 23 1 4.0049 -9.6707 -8.4756 24 6 3.4385 -8.6725 -3.1932 25 6 3.0042 -7.9624 -2.0973 26 6 1.5300 -2.1638 1.2491 27 6 2.0400 -0.7213 1.2492 28 1 1.6763 -0.2074 2.1389 29 6 3.5700 -0.7213 1.2492 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6766 -0.2073 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 1.8930 -2.6773 -2.1396 36 1 0.4400 -2.1637 -1.2494 37 1 1.7089 -6.9718 -0.0358 38 1 0.2552 -6.4588 -0.9257 39 1 0.1033 -6.7275 -3.3247 40 1 0.8498 -7.9758 -5.3040 41 1 0.2554 -10.2452 -6.7818 42 1 4.3703 -9.2169 -3.1519 43 1 3.5969 -7.9506 -1.1945 44 1 1.8937 -2.6774 2.1391 45 1 0.4400 -2.1638 1.2491 46 1 3.9334 0.3063 1.2497 47 1 3.9333 -1.2352 2.1391 48 1 3.9334 -1.2351 0.3592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435687525.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:04 Heat of formation + Delta-G solvation = -105.771379 kcal Electronic energy + Delta-G solvation = -26131.770563 eV Core-core repulsion = 22535.690163 eV Total energy + Delta-G solvation = -3596.080400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.71806 -39.14970 -37.64211 -36.00354 -33.87024 -32.61991 -32.10586 -30.73072 -29.36946 -28.82974 -27.28325 -25.39459 -24.10653 -23.17966 -22.28430 -21.08821 -20.44532 -20.03176 -18.18237 -17.41410 -17.35859 -16.59067 -16.04167 -15.53677 -15.34955 -14.94162 -14.49009 -14.04936 -13.99816 -13.79077 -13.58263 -13.12903 -12.96301 -12.80106 -12.61254 -12.41822 -12.19841 -12.13136 -12.02711 -11.79575 -11.58315 -11.49710 -11.25495 -11.23512 -11.13136 -11.10022 -10.64669 -10.61844 -10.52926 -10.28720 -10.13163 -10.09132 -9.95239 -9.66819 -9.46973 -9.21218 -7.55996 -7.45202 -6.87078 -4.46171 2.46154 2.49202 2.95630 3.00522 3.02566 3.07912 3.40783 3.85633 4.38487 4.44546 4.48669 4.59040 4.88281 4.90061 5.03255 5.07160 5.17224 5.22329 5.31187 5.42462 5.45627 5.59933 5.62095 5.63441 5.68514 5.68783 5.72830 5.74583 5.82780 5.88129 5.93383 6.01438 6.08394 6.09698 6.16471 6.23375 6.26006 6.31598 6.35528 6.86248 6.92258 6.97707 7.18342 7.26527 7.51777 7.74181 7.95855 8.01148 8.12513 8.19351 8.53882 8.78713 8.86894 10.07150 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.002446 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.230691 B =11444.929408 C =11818.963131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.081 4.081 7 H 0.107 0.893 8 C 0.457 3.543 9 O -0.522 6.522 10 O -0.349 6.349 11 C 0.135 3.865 12 C -0.234 4.234 13 C -0.075 4.075 14 C -0.170 4.170 15 C 0.119 3.881 16 C -0.457 4.457 17 H 0.080 0.920 18 C 0.076 3.924 19 N -0.787 5.787 20 Si 0.909 3.091 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.259 1.259 24 C -0.230 4.230 25 C -0.064 4.064 26 C -0.100 4.100 27 C -0.085 4.085 28 H 0.073 0.927 29 C -0.155 4.155 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.282 0.718 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.906 17.021 8.831 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.151 4.151 6 C -0.100 4.100 7 H 0.125 0.875 8 C 0.300 3.700 9 O -0.411 6.411 10 O -0.265 6.265 11 C 0.063 3.937 12 C -0.235 4.235 13 C -0.094 4.094 14 C -0.189 4.189 15 C 0.116 3.884 16 C -0.486 4.486 17 H 0.098 0.902 18 C -0.143 4.143 19 N -0.411 5.411 20 Si 0.733 3.267 21 H -0.195 1.195 22 H -0.199 1.199 23 H -0.183 1.183 24 C -0.250 4.250 25 C -0.082 4.082 26 C -0.137 4.137 27 C -0.104 4.104 28 H 0.091 0.909 29 C -0.212 4.212 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.137 0.863 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.457 16.765 8.979 19.024 hybrid contribution 0.042 -0.520 -0.651 0.834 sum 0.499 16.245 8.329 18.262 Atomic orbital electron populations 1.21967 0.95326 1.02368 1.01409 1.21159 0.95825 0.98978 0.94730 0.91210 1.21609 1.01050 0.94898 0.97612 1.21556 1.01476 0.95531 0.96542 1.21109 1.02699 0.88043 0.98145 0.87541 1.23735 0.77622 0.88768 0.79827 1.90611 1.36243 1.77597 1.36686 1.86701 1.69240 1.24888 1.45706 1.21699 0.97339 0.77036 0.97624 1.18664 1.00214 1.08707 0.95947 1.20530 0.97399 0.98300 0.93177 1.21288 0.99463 1.00260 0.97909 1.17683 0.90962 0.88559 0.91197 1.19665 0.94961 1.29818 1.04124 0.90188 1.25969 0.94420 0.93502 1.00442 1.69821 1.02830 1.33052 1.35422 0.86285 0.79904 0.79450 0.81063 1.19465 1.19923 1.18302 1.20950 1.02531 1.07537 0.93956 1.20380 0.94353 0.96577 0.96934 1.21493 1.01718 0.94354 0.96148 1.21138 0.95807 0.95400 0.98028 0.90891 1.21982 0.95245 1.01717 1.02230 0.92898 0.92761 0.91892 0.91489 0.91280 0.90163 0.91206 0.92215 0.92136 0.89370 0.86297 0.90658 0.88728 0.89356 0.91221 0.90736 0.92721 0.92656 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.50 37.16 0.32 -0.91 16 2 C -0.09 -0.69 2.72 -90.61 -0.25 -0.93 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 4 C -0.11 -0.97 5.18 -26.73 -0.14 -1.10 16 5 C -0.11 -1.22 4.86 -26.73 -0.13 -1.35 16 6 C -0.08 -0.96 2.35 -91.77 -0.22 -1.17 16 7 H 0.11 1.15 6.43 -51.93 -0.33 0.82 16 8 C 0.46 7.36 7.26 36.01 0.26 7.62 16 9 O -0.52 -9.54 15.73 -18.75 -0.30 -9.83 16 10 O -0.35 -6.40 10.11 -39.24 -0.40 -6.80 16 11 C 0.13 2.62 5.58 36.00 0.20 2.83 16 12 C -0.23 -5.21 5.54 -104.33 -0.58 -5.79 16 13 C -0.08 -1.77 9.67 -39.66 -0.38 -2.15 16 14 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 15 C 0.12 3.12 5.57 -106.82 -0.60 2.52 16 16 C -0.46 -11.86 9.05 -37.74 -0.34 -12.20 16 17 H 0.08 1.99 7.91 -52.48 -0.41 1.57 16 18 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 19 N -0.79 -19.87 10.97 55.55 0.61 -19.26 16 20 Si 0.91 18.13 29.60 -169.99 -5.03 13.09 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 23 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 24 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 25 C -0.06 -1.44 9.67 -39.66 -0.38 -1.83 16 26 C -0.10 -1.04 3.75 -26.73 -0.10 -1.14 16 27 C -0.09 -0.69 2.72 -90.62 -0.25 -0.94 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 C -0.15 -1.16 8.50 37.16 0.32 -0.85 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.57 4.81 -51.93 -0.25 0.32 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.55 6.43 -51.93 -0.33 0.22 16 35 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 36 H 0.07 0.77 6.43 -51.93 -0.33 0.44 16 37 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 38 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 39 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.12 3.13 6.18 -52.49 -0.32 2.81 16 41 H 0.28 6.45 8.30 -40.82 -0.34 6.12 16 42 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 45 H 0.07 0.84 6.39 -51.93 -0.33 0.51 16 46 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.49 4.81 -51.93 -0.25 0.24 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -27.83 373.47 -10.17 -38.00 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.61 Total: 5.47 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -3.07 Total: -26.31 kcal Atomic # 7 Polarization: -19.87 SS G_CDS: 0.61 Total: -19.26 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.69 Total: -16.63 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.83 -10.17 -38.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435687525.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.768 kcal (2) G-P(sol) polarization free energy of solvation -27.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds