Wall clock time and date at job start Tue Mar 31 2020 12:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47474 * 2 1 4 4 C 1.53002 * 109.47026 * 240.00024 * 2 1 3 5 5 C 1.52998 * 109.47018 * 300.00095 * 4 2 1 6 6 C 1.52998 * 109.47358 * 299.99862 * 5 4 2 7 7 H 1.09002 * 109.46936 * 300.00134 * 6 5 4 8 8 C 1.50704 * 109.47225 * 180.02562 * 6 5 4 9 9 O 1.20830 * 119.99301 * 240.00251 * 8 6 5 10 10 O 1.34219 * 120.00220 * 59.99520 * 8 6 5 11 11 C 1.45206 * 117.00131 * 180.02562 * 10 8 6 12 12 C 1.50694 * 109.47268 * 180.02562 * 11 10 8 13 13 C 1.38629 * 119.74970 * 269.73054 * 12 11 10 14 14 C 1.37624 * 120.24962 * 179.72196 * 13 12 11 15 15 C 1.40714 * 119.74151 * 0.56867 * 14 13 12 16 16 C 1.41399 * 120.23976 * 179.68039 * 15 14 13 17 17 H 1.07999 * 119.99634 * 204.40645 * 16 15 14 18 18 C 1.39946 * 120.00280 * 24.40939 * 16 15 14 19 19 N 1.30824 * 119.99773 * 17.84298 * 18 16 15 20 20 Si 1.86799 * 120.00076 * 197.84659 * 18 16 15 21 21 H 1.48498 * 109.47108 * 89.99531 * 20 18 16 22 22 H 1.48503 * 109.46832 * 209.99957 * 20 18 16 23 23 H 1.48509 * 109.46886 * 329.99669 * 20 18 16 24 24 C 1.40716 * 119.51388 * 359.70571 * 15 14 13 25 25 C 1.37622 * 119.74280 * 359.97438 * 24 15 14 26 26 C 1.53002 * 109.46944 * 60.00092 * 6 5 4 27 27 C 1.52998 * 109.47087 * 120.00323 * 2 1 3 28 28 H 1.09003 * 109.47375 * 180.02562 * 27 2 1 29 29 C 1.53002 * 109.46944 * 299.99751 * 27 2 1 30 30 H 1.09002 * 109.46873 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46796 * 299.99558 * 1 2 3 32 32 H 1.09000 * 109.47068 * 59.99569 * 1 2 3 33 33 H 1.09002 * 109.47270 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47143 * 59.99885 * 4 2 1 35 35 H 1.08997 * 109.46900 * 179.97438 * 5 4 2 36 36 H 1.09003 * 109.47236 * 60.00386 * 5 4 2 37 37 H 1.09003 * 109.46888 * 300.00432 * 11 10 8 38 38 H 1.08998 * 109.46718 * 59.99860 * 11 10 8 39 39 H 1.08001 * 119.87894 * 359.97438 * 13 12 11 40 40 H 1.08000 * 120.12841 * 180.27600 * 14 13 12 41 41 H 0.96997 * 120.00193 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.12447 * 179.97438 * 24 15 14 43 43 H 1.07997 * 119.87274 * 180.02562 * 25 24 15 44 44 H 1.08992 * 109.47193 * 60.00318 * 26 6 5 45 45 H 1.09000 * 109.46865 * 179.97438 * 26 6 5 46 46 H 1.08992 * 109.47193 * 60.00318 * 29 27 2 47 47 H 1.09008 * 109.47168 * 179.97438 * 29 27 2 48 48 H 1.08994 * 109.47414 * 299.99627 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 -2.1637 -1.2493 6 6 2.0400 -2.8850 -0.0001 7 1 3.1300 -2.8851 -0.0001 8 6 1.5381 -4.3060 -0.0004 9 8 0.8433 -4.7015 0.9057 10 8 1.8627 -5.1322 -1.0071 11 6 1.3434 -6.4867 -0.9419 12 6 1.8088 -7.2617 -2.1476 13 6 1.0363 -7.2725 -3.2986 14 6 1.4542 -7.9722 -4.4076 15 6 2.6649 -8.6881 -4.3659 16 6 3.1011 -9.4160 -5.4970 17 1 3.7738 -10.2519 -5.3746 18 6 2.6610 -9.0533 -6.7750 19 7 2.1469 -7.8675 -6.9777 20 14 2.8075 -10.2624 -8.1913 21 1 1.5731 -11.0841 -8.2704 22 1 2.9877 -9.5161 -9.4625 23 1 3.9782 -11.1481 -7.9670 24 6 3.4381 -8.6746 -3.1903 25 6 3.0038 -7.9626 -2.0956 26 6 1.5300 -2.1638 1.2492 27 6 2.0400 -0.7213 1.2492 28 1 3.1300 -0.7209 1.2495 29 6 1.5300 -0.0001 2.4985 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 3.1300 -0.7209 -1.2495 34 1 1.6767 -0.2075 -2.1392 35 1 1.8929 -2.6774 -2.1395 36 1 0.4399 -2.1637 -1.2493 37 1 1.7069 -6.9719 -0.0360 38 1 0.2539 -6.4577 -0.9264 39 1 0.1048 -6.7265 -3.3266 40 1 0.8530 -7.9756 -5.3048 41 1 1.8415 -7.6162 -7.8633 42 1 4.3687 -9.2209 -3.1473 43 1 3.5957 -7.9505 -1.1924 44 1 0.4401 -2.1638 1.2492 45 1 1.8929 -2.6779 2.1391 46 1 0.4401 -0.0001 2.4985 47 1 1.8930 -0.5142 3.3885 48 1 1.8934 1.0275 2.4986 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435687527.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:12 Heat of formation + Delta-G solvation = -108.078212 kcal Electronic energy + Delta-G solvation = -26043.796162 eV Core-core repulsion = 22447.615730 eV Total energy + Delta-G solvation = -3596.180432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.60948 -39.05466 -37.64044 -35.99437 -33.87793 -33.17118 -32.00840 -30.74470 -29.36859 -27.87850 -27.28393 -26.05623 -24.27049 -23.15474 -21.86527 -21.08870 -20.24583 -20.01745 -18.67850 -17.39677 -17.15205 -16.35017 -16.00231 -15.61486 -15.34641 -15.24534 -14.34458 -14.28278 -13.86290 -13.83047 -13.42623 -13.18153 -12.93657 -12.73707 -12.56005 -12.22988 -12.17836 -12.13277 -12.02551 -11.91450 -11.73470 -11.46186 -11.25017 -11.19786 -10.99627 -10.88879 -10.80904 -10.58391 -10.44200 -10.37862 -10.16902 -10.11220 -9.96370 -9.66359 -9.46429 -9.22721 -7.56325 -7.45002 -6.86649 -4.46506 2.46566 2.50358 2.96596 3.00395 3.03456 3.05522 3.41198 3.85542 4.44397 4.45501 4.47569 4.61085 4.85895 4.90417 5.04456 5.13512 5.18449 5.26954 5.39889 5.41406 5.47940 5.54394 5.62091 5.63831 5.68359 5.70687 5.73679 5.79324 5.83943 5.87426 5.95489 6.04438 6.08813 6.14021 6.16941 6.22556 6.25643 6.31417 6.38708 6.86488 6.93091 6.97656 7.18495 7.26673 7.51683 7.74219 7.95802 8.01253 8.13807 8.19285 8.53985 8.78614 8.86838 10.07164 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.023431 B = 0.002456 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.696982 B =11396.769996 C =12096.769878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.088 4.088 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.080 4.080 7 H 0.104 0.896 8 C 0.458 3.542 9 O -0.522 6.522 10 O -0.348 6.348 11 C 0.135 3.865 12 C -0.234 4.234 13 C -0.076 4.076 14 C -0.170 4.170 15 C 0.118 3.882 16 C -0.456 4.456 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.785 5.785 20 Si 0.911 3.089 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.230 4.230 25 C -0.064 4.064 26 C -0.099 4.099 27 C -0.086 4.086 28 H 0.071 0.929 29 C -0.148 4.148 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.283 0.717 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.054 0.946 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.394 14.385 10.321 17.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.099 4.099 7 H 0.122 0.878 8 C 0.301 3.699 9 O -0.412 6.412 10 O -0.264 6.264 11 C 0.063 3.937 12 C -0.236 4.236 13 C -0.094 4.094 14 C -0.190 4.190 15 C 0.115 3.885 16 C -0.485 4.485 17 H 0.098 0.902 18 C -0.144 4.144 19 N -0.410 5.410 20 Si 0.735 3.265 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.250 4.250 25 C -0.083 4.083 26 C -0.137 4.137 27 C -0.105 4.105 28 H 0.090 0.910 29 C -0.205 4.205 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.138 0.862 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.693 14.373 10.369 17.803 hybrid contribution 0.040 -0.589 -0.648 0.877 sum -1.653 13.783 9.721 16.947 Atomic orbital electron populations 1.22016 0.95364 1.02368 1.01456 1.21157 0.96076 0.98975 0.94458 0.91223 1.21568 1.00832 0.94921 0.97688 1.21560 1.01457 0.95535 0.96589 1.21073 1.02554 0.88121 0.98167 0.87758 1.23712 0.77597 0.88743 0.79807 1.90607 1.36302 1.77600 1.36705 1.86721 1.69155 1.24881 1.45667 1.21711 0.97285 0.77088 0.97598 1.18681 1.00695 1.08506 0.95687 1.20534 0.97659 0.98328 0.92905 1.21296 0.97511 1.02782 0.97372 1.17687 0.89924 0.89194 0.91678 1.19681 1.24958 1.13362 0.90526 0.90168 1.25972 0.92784 0.94996 1.00664 1.69828 1.29251 1.17525 1.24368 0.86271 0.79949 0.80911 0.79397 1.19156 1.20209 1.18512 1.20964 1.00728 1.07839 0.95428 1.20389 0.94308 0.96730 0.96832 1.21519 1.01940 0.94189 0.96016 1.21145 1.00238 0.94318 0.94782 0.91045 1.21867 1.01571 0.99939 0.97155 0.91939 0.92559 0.92859 0.91579 0.91384 0.90087 0.91204 0.92234 0.92166 0.89373 0.86238 0.90645 0.88729 0.89349 0.90714 0.91251 0.92273 0.92724 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 8.15 37.16 0.30 -0.97 16 2 C -0.09 -0.71 2.72 -90.62 -0.25 -0.96 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.11 -1.01 5.45 -26.73 -0.15 -1.15 16 5 C -0.11 -1.28 4.86 -26.73 -0.13 -1.41 16 6 C -0.08 -0.97 2.63 -91.77 -0.24 -1.22 16 7 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 8 C 0.46 7.49 7.26 36.01 0.26 7.76 16 9 O -0.52 -9.59 15.73 -18.75 -0.30 -9.89 16 10 O -0.35 -6.52 10.11 -39.23 -0.40 -6.92 16 11 C 0.14 2.63 5.58 36.00 0.20 2.83 16 12 C -0.23 -5.22 5.54 -104.33 -0.58 -5.80 16 13 C -0.08 -1.77 9.67 -39.66 -0.38 -2.15 16 14 C -0.17 -4.37 8.70 -38.87 -0.34 -4.71 16 15 C 0.12 3.10 5.58 -106.82 -0.60 2.50 16 16 C -0.46 -11.84 9.05 -37.74 -0.34 -12.18 16 17 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 18 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 19 N -0.79 -19.82 10.95 55.55 0.61 -19.21 16 20 Si 0.91 18.15 29.60 -169.99 -5.03 13.12 16 21 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 24 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 25 C -0.06 -1.45 9.67 -39.66 -0.38 -1.83 16 26 C -0.10 -1.06 3.50 -26.73 -0.09 -1.15 16 27 C -0.09 -0.73 2.49 -90.62 -0.23 -0.95 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 C -0.15 -1.10 8.84 37.16 0.33 -0.77 16 30 H 0.06 0.59 4.81 -51.93 -0.25 0.34 16 31 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 36 H 0.07 0.80 6.43 -51.93 -0.33 0.47 16 37 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 38 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 39 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 41 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 42 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.07 0.86 6.39 -51.93 -0.33 0.53 16 45 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 46 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 47 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 48 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -27.84 376.84 -10.30 -38.14 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.79 Total: 5.51 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: -3.08 Total: -26.42 kcal Atomic # 7 Polarization: -19.82 SS G_CDS: 0.61 Total: -19.21 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.69 Total: -16.81 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.84 -10.30 -38.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435687527.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.941 kcal (2) G-P(sol) polarization free energy of solvation -27.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds