Wall clock time and date at job start Tue Mar 31 2020 12:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47106 * 2 1 4 4 C 1.53004 * 109.47436 * 240.00080 * 2 1 3 5 5 C 1.52991 * 109.47436 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47126 * 59.99812 * 5 4 2 7 7 C 1.52995 * 109.47135 * 299.99798 * 6 5 4 8 8 H 1.08990 * 109.47411 * 300.00091 * 7 6 5 9 9 O 1.45205 * 109.47237 * 179.97438 * 7 6 5 10 10 C 1.34229 * 116.99916 * 90.00112 * 9 7 6 11 11 O 1.20827 * 119.99991 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00068 * 180.02562 * 10 9 7 13 13 H 1.08996 * 109.46750 * 300.00181 * 12 10 9 14 14 C 1.50700 * 109.46914 * 60.00152 * 12 10 9 15 15 H 1.08000 * 120.00420 * 34.16338 * 14 12 10 16 16 C 1.37875 * 119.99769 * 214.16809 * 14 12 10 17 17 N 1.31516 * 120.00212 * 6.40222 * 16 14 12 18 18 Si 1.86806 * 120.00149 * 186.40397 * 16 14 12 19 19 H 1.48506 * 109.46943 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47083 * 119.99489 * 18 16 14 21 21 H 1.48503 * 109.47040 * 239.99915 * 18 16 14 22 22 C 1.50698 * 109.46915 * 179.97438 * 12 10 9 23 23 C 1.38233 * 120.00252 * 293.85909 * 22 12 10 24 24 C 1.38233 * 119.99573 * 179.79149 * 23 22 12 25 25 C 1.38228 * 120.00568 * 0.43841 * 24 23 22 26 26 C 1.38238 * 119.99773 * 359.81236 * 25 24 23 27 27 C 1.38236 * 119.99429 * 114.13647 * 22 12 10 28 28 C 1.53000 * 109.47126 * 119.99891 * 2 1 3 29 29 H 1.08993 * 109.47264 * 300.00113 * 28 2 1 30 30 C 1.53000 * 109.47046 * 60.00288 * 28 2 1 31 31 H 1.09000 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47551 * 299.99982 * 1 2 3 33 33 H 1.08997 * 109.47358 * 60.00261 * 1 2 3 34 34 H 1.09000 * 109.46907 * 300.00042 * 4 2 1 35 35 H 1.08997 * 109.47125 * 59.99516 * 4 2 1 36 36 H 1.09003 * 109.47105 * 180.02562 * 5 4 2 37 37 H 1.09000 * 109.47106 * 299.99920 * 5 4 2 38 38 H 1.09001 * 109.47418 * 60.00452 * 6 5 4 39 39 H 1.09008 * 109.47088 * 179.97438 * 6 5 4 40 40 H 0.97002 * 120.00238 * 180.02562 * 17 16 14 41 41 H 1.08001 * 119.99923 * 359.97438 * 23 22 12 42 42 H 1.08007 * 119.99687 * 180.27165 * 24 23 22 43 43 H 1.07999 * 120.00654 * 179.83280 * 25 24 23 44 44 H 1.08002 * 119.99963 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.00349 * 359.97018 * 27 22 12 46 46 H 1.09003 * 109.47087 * 59.99672 * 30 28 2 47 47 H 1.09000 * 109.47301 * 179.97438 * 30 28 2 48 48 H 1.09000 * 109.46936 * 299.99519 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5699 -0.7207 -1.2496 6 6 4.0805 -1.4415 -0.0003 7 6 3.5705 -0.7203 1.2489 8 1 3.9334 0.3074 1.2486 9 8 4.0545 -1.4047 2.4345 10 6 5.2342 -1.0015 2.9320 11 8 5.8420 -0.1059 2.3949 12 6 5.8005 -1.6657 4.1605 13 1 5.1075 -1.5418 4.9926 14 6 6.0026 -3.1343 3.8895 15 1 6.2899 -3.4669 2.9029 16 6 5.8206 -4.0534 4.9009 17 7 5.3498 -3.6647 6.0658 18 14 6.2427 -5.8508 4.6169 19 1 6.7500 -6.0273 3.2324 20 1 7.2868 -6.2730 5.5847 21 1 5.0262 -6.6810 4.8074 22 6 7.1231 -1.0331 4.5090 23 6 8.2028 -1.1745 3.6574 24 6 9.4147 -0.5905 3.9751 25 6 9.5497 0.1273 5.1486 26 6 8.4714 0.2644 6.0028 27 6 7.2582 -0.3161 5.6832 28 6 2.0399 -0.7212 1.2493 29 1 1.6766 -0.2074 2.1392 30 6 1.5300 -2.1637 1.2492 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2075 -2.1392 36 1 3.9333 -1.2341 -2.1398 37 1 3.9329 0.3071 -1.2498 38 1 3.7176 -2.4694 -0.0001 39 1 5.1705 -1.4415 -0.0008 40 1 5.2221 -4.3113 6.7776 41 1 8.0985 -1.7388 2.7424 42 1 10.2571 -0.6973 3.3075 43 1 10.4973 0.5813 5.3982 44 1 8.5769 0.8248 6.9200 45 1 6.4159 -0.2090 6.3504 46 1 1.8933 -2.6775 0.3592 47 1 1.8937 -2.6777 2.1390 48 1 0.4400 -2.1637 1.2493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001458525583.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:45 Heat of formation + Delta-G solvation = -94.638011 kcal Electronic energy + Delta-G solvation = -27427.848883 eV Core-core repulsion = 23832.251262 eV Total energy + Delta-G solvation = -3595.597621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.17590 -38.88653 -37.90225 -35.32930 -33.71208 -32.57183 -31.22599 -30.94017 -30.02039 -27.73505 -27.05784 -25.65829 -24.10988 -22.42750 -21.78046 -21.63290 -20.71218 -19.35539 -18.38211 -16.98339 -16.48862 -16.12811 -15.78244 -15.31524 -14.90180 -14.76115 -14.38460 -14.14808 -14.10777 -13.67895 -13.44171 -13.03152 -12.56359 -12.52218 -12.50149 -12.41310 -12.13001 -11.89220 -11.74081 -11.69248 -11.47403 -11.31062 -11.05826 -11.01570 -10.87779 -10.65311 -10.41986 -10.40607 -10.33663 -10.23493 -10.11552 -9.96929 -9.53755 -9.47966 -9.08282 -8.68209 -8.03072 -7.73248 -6.26822 -4.30706 2.27462 2.30705 3.21343 3.26363 3.31440 3.39793 3.62149 4.29835 4.66095 4.72234 4.75222 4.89871 5.10339 5.14294 5.19420 5.35819 5.36826 5.45665 5.57649 5.65771 5.65947 5.67519 5.72466 5.74823 5.82552 5.85466 5.95686 6.00600 6.05745 6.10377 6.12285 6.14529 6.23260 6.34644 6.40211 6.40773 6.46905 6.50713 6.52657 6.74039 6.79358 6.89357 7.10617 7.29305 7.35734 7.41171 7.61228 7.71721 7.86418 8.00112 8.67216 8.93327 9.33172 10.82912 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.004524 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.130109 B = 6187.556369 C = 7440.080850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.069 0.931 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.135 4.135 7 C 0.090 3.910 8 H 0.075 0.925 9 O -0.335 6.335 10 C 0.474 3.526 11 O -0.540 6.540 12 C 0.074 3.926 13 H 0.102 0.898 14 C -0.508 4.508 15 H 0.063 0.937 16 C 0.076 3.924 17 N -0.879 5.879 18 Si 0.900 3.100 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.020 4.020 23 C -0.085 4.085 24 C -0.134 4.134 25 C -0.145 4.145 26 C -0.131 4.131 27 C -0.117 4.117 28 C -0.080 4.080 29 H 0.074 0.926 30 C -0.149 4.149 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.267 0.733 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.115 0.885 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 5.527 -8.950 11.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.087 0.913 4 C -0.155 4.155 5 C -0.152 4.152 6 C -0.173 4.173 7 C 0.034 3.966 8 H 0.093 0.907 9 O -0.251 6.251 10 C 0.320 3.680 11 O -0.430 6.430 12 C 0.055 3.945 13 H 0.120 0.880 14 C -0.545 4.545 15 H 0.082 0.918 16 C -0.129 4.129 17 N -0.515 5.515 18 Si 0.727 3.273 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.020 4.020 23 C -0.103 4.103 24 C -0.152 4.152 25 C -0.164 4.164 26 C -0.149 4.149 27 C -0.135 4.135 28 C -0.098 4.098 29 H 0.093 0.907 30 C -0.206 4.206 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.133 0.867 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.259 5.717 -8.944 11.847 hybrid contribution 0.389 -0.895 -0.060 0.978 sum -4.871 4.822 -9.004 11.316 Atomic orbital electron populations 1.21857 0.94991 1.02115 1.01408 1.21111 0.95602 0.99284 0.94374 0.91290 1.21670 0.95546 1.01106 0.97132 1.21465 0.95499 1.00791 0.97443 1.21927 1.01240 1.00478 0.93634 1.22523 0.93492 0.96736 0.83826 0.90723 1.86705 1.37374 1.59595 1.41427 1.25003 0.77808 0.79282 0.85949 1.90530 1.59837 1.30900 1.61732 1.17878 0.91161 0.95000 0.90477 0.88013 1.20588 1.48729 0.87796 0.97360 0.91835 1.24921 0.93479 0.99437 0.95023 1.69879 1.42668 1.35275 1.03684 0.86394 0.78294 0.83936 0.78660 1.19425 1.20652 1.20657 1.20030 0.96439 0.92223 0.93339 1.20847 0.92249 0.97995 0.99185 1.20964 0.97374 0.99588 0.97240 1.20835 0.98105 1.01660 0.95758 1.20919 0.93634 1.01145 0.99197 1.21008 0.97353 0.97818 0.97322 1.21164 0.92909 0.97770 0.97990 0.90721 1.21927 1.00014 0.95573 1.03096 0.92139 0.92679 0.92897 0.91353 0.92174 0.91773 0.92009 0.90673 0.91514 0.92299 0.87021 0.87415 0.87534 0.87338 0.86742 0.92335 0.91152 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.84 37.15 0.33 -1.04 16 2 C -0.09 -0.95 2.49 -90.62 -0.23 -1.17 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.12 -1.23 4.93 -26.73 -0.13 -1.36 16 5 C -0.11 -1.37 5.92 -26.74 -0.16 -1.53 16 6 C -0.14 -2.07 5.28 -26.73 -0.14 -2.22 16 7 C 0.09 1.52 2.13 -26.70 -0.06 1.46 16 8 H 0.07 1.34 7.16 -51.93 -0.37 0.97 16 9 O -0.33 -7.09 9.13 -39.26 -0.36 -7.45 16 10 C 0.47 10.99 7.12 36.01 0.26 11.25 16 11 O -0.54 -12.90 14.64 -18.75 -0.27 -13.17 16 12 C 0.07 1.82 2.55 -94.07 -0.24 1.58 16 13 H 0.10 2.67 7.00 -51.93 -0.36 2.31 16 14 C -0.51 -13.21 7.59 -34.44 -0.26 -13.48 16 15 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 16 C 0.08 2.00 5.45 -17.82 -0.10 1.90 16 17 N -0.88 -23.81 12.78 55.43 0.71 -23.10 16 18 Si 0.90 20.52 29.54 -169.99 -5.02 15.49 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 C -0.02 -0.46 4.30 -104.63 -0.45 -0.91 16 23 C -0.08 -1.88 8.31 -39.58 -0.33 -2.21 16 24 C -0.13 -2.58 10.05 -39.59 -0.40 -2.98 16 25 C -0.15 -2.64 10.05 -39.58 -0.40 -3.03 16 26 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 27 C -0.12 -2.52 9.67 -39.58 -0.38 -2.91 16 28 C -0.08 -1.11 2.47 -90.59 -0.22 -1.33 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 C -0.15 -2.02 8.01 37.16 0.30 -1.72 16 31 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.71 6.43 -51.93 -0.33 0.38 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.15 6.43 -51.93 -0.33 0.81 16 39 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 40 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.11 2.50 7.89 -52.49 -0.41 2.09 16 42 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 43 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 44 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 45 H 0.11 2.38 7.96 -52.49 -0.42 1.96 16 46 H 0.06 0.76 4.81 -51.93 -0.25 0.51 16 47 H 0.07 1.13 7.68 -51.93 -0.40 0.73 16 48 H 0.05 0.61 6.43 -51.93 -0.33 0.27 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -28.34 376.27 -10.03 -38.37 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -7.75 Total: 6.74 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -3.01 Total: -22.56 kcal Atomic # 7 Polarization: -23.81 SS G_CDS: 0.71 Total: -23.10 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.63 Total: -20.62 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.34 -10.03 -38.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001458525583.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.270 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds