Wall clock time and date at job start Tue Mar 31 2020 11:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47361 * 2 1 4 4 C 1.53002 * 109.46987 * 239.99702 * 2 1 3 5 5 C 1.52996 * 109.46804 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47170 * 60.00568 * 5 4 2 7 7 C 1.52997 * 109.47256 * 299.99873 * 6 5 4 8 8 H 1.09009 * 109.46703 * 299.99899 * 7 6 5 9 9 O 1.45191 * 109.47357 * 180.02562 * 7 6 5 10 10 C 1.34236 * 117.00132 * 89.99867 * 9 7 6 11 11 O 1.20823 * 120.00024 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99949 * 180.02562 * 10 9 7 13 13 C 1.50699 * 109.47273 * 179.97438 * 12 10 9 14 14 C 1.37636 * 120.12931 * 265.02525 * 13 12 10 15 15 C 1.38610 * 120.25166 * 179.97438 * 14 13 12 16 16 C 1.38660 * 120.49794 * 359.97438 * 15 14 13 17 17 C 1.37594 * 120.25168 * 0.02562 * 16 15 14 18 18 C 1.40699 * 120.12486 * 84.99561 * 13 12 10 19 19 C 1.41394 * 120.24579 * 0.02562 * 18 13 12 20 20 H 1.07996 * 120.00075 * 334.05141 * 19 18 13 21 21 C 1.39945 * 119.99670 * 154.05189 * 19 18 13 22 22 N 1.30820 * 120.00362 * 343.68359 * 21 19 18 23 23 Si 1.86800 * 119.99690 * 163.68056 * 21 19 18 24 24 H 1.48500 * 109.47072 * 90.00336 * 23 21 19 25 25 H 1.48508 * 109.47218 * 210.00312 * 23 21 19 26 26 H 1.48498 * 109.47322 * 330.00159 * 23 21 19 27 27 C 1.52997 * 109.47361 * 59.99657 * 7 6 5 28 28 H 1.08999 * 109.46892 * 299.99656 * 1 2 3 29 29 H 1.08998 * 109.47052 * 60.00132 * 1 2 3 30 30 H 1.08997 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47289 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47073 * 300.00427 * 3 2 1 33 33 H 1.09000 * 109.47292 * 59.99691 * 3 2 1 34 34 H 1.08993 * 109.47305 * 300.00458 * 4 2 1 35 35 H 1.09003 * 109.46623 * 60.00078 * 4 2 1 36 36 H 1.09010 * 109.46528 * 180.02562 * 5 4 2 37 37 H 1.08997 * 109.47741 * 299.99903 * 5 4 2 38 38 H 1.09005 * 109.47279 * 179.97438 * 6 5 4 39 39 H 1.09009 * 109.47182 * 59.99478 * 6 5 4 40 40 H 1.08996 * 109.47504 * 59.99640 * 12 10 9 41 41 H 1.09001 * 109.47215 * 299.99781 * 12 10 9 42 42 H 1.08004 * 119.87217 * 359.97321 * 14 13 12 43 43 H 1.07996 * 119.75421 * 180.02562 * 15 14 13 44 44 H 1.08002 * 119.87421 * 180.27728 * 16 15 14 45 45 H 1.07995 * 120.13191 * 179.97438 * 17 16 15 46 46 H 0.97001 * 119.99960 * 179.97438 * 22 21 19 47 47 H 1.09004 * 109.46999 * 59.99938 * 27 7 6 48 48 H 1.09000 * 109.47421 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4416 -0.0003 7 6 3.5705 -0.7205 1.2489 8 1 3.9335 0.3074 1.2487 9 8 4.0554 -1.4042 2.4344 10 6 5.2351 -1.0000 2.9314 11 8 5.8424 -0.1048 2.3934 12 6 5.8023 -1.6636 4.1598 13 6 7.1246 -1.0300 4.5077 14 6 8.2990 -1.5935 4.0630 15 6 9.5166 -1.0125 4.3810 16 6 9.5668 0.1409 5.1489 17 6 8.4055 0.7216 5.6043 18 6 7.1634 0.1402 5.2879 19 6 5.9635 0.7280 5.7503 20 1 5.0426 0.5739 5.2077 21 6 5.9692 1.5095 6.9112 22 7 6.9803 1.4441 7.7388 23 14 4.5331 2.6460 7.2791 24 1 3.5144 1.9149 8.0747 25 1 5.0155 3.8194 8.0511 26 1 3.9277 3.1074 6.0040 27 6 2.0405 -0.7209 1.2493 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.9333 -1.2343 -2.1398 37 1 3.9330 0.3070 -1.2498 38 1 5.1705 -1.4416 -0.0008 39 1 3.7174 -2.4695 -0.0001 40 1 5.9491 -2.7257 3.9641 41 1 5.1096 -1.5399 4.9922 42 1 8.2716 -2.4917 3.4639 43 1 10.4331 -1.4612 4.0275 44 1 10.5208 0.5876 5.3870 45 1 8.4468 1.6197 6.2026 46 1 6.9844 1.9861 8.5433 47 1 1.6775 -1.7488 1.2494 48 1 1.6772 -0.2068 2.1390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460729678.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:34 Heat of formation + Delta-G solvation = -103.765191 kcal Electronic energy + Delta-G solvation = -27079.912581 eV Core-core repulsion = 23483.919176 eV Total energy + Delta-G solvation = -3595.993405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.38021 -38.98696 -37.53052 -35.66001 -33.64984 -32.99878 -31.82218 -30.26153 -29.48345 -27.48491 -27.02527 -26.50126 -25.08238 -22.81097 -21.77548 -20.95622 -20.49701 -19.35822 -18.47352 -17.19390 -17.01857 -16.10528 -15.70679 -15.23920 -14.89698 -14.81697 -14.48013 -14.34624 -13.86380 -13.78754 -13.55384 -13.17412 -12.88091 -12.62545 -12.53973 -12.16586 -12.04800 -11.81029 -11.71383 -11.59110 -11.58015 -11.22641 -11.15850 -11.08817 -11.02401 -10.98059 -10.76003 -10.65819 -10.56274 -10.41795 -10.14149 -9.83905 -9.60339 -9.50987 -9.40173 -9.17447 -7.35885 -7.33226 -6.76335 -4.37767 2.71222 2.88348 3.01726 3.06160 3.11233 3.25556 3.39933 3.92710 4.48200 4.54462 4.62475 4.67260 4.94238 4.99043 5.19422 5.20749 5.27640 5.35475 5.46185 5.52380 5.53347 5.60927 5.72165 5.76480 5.79098 5.83900 5.88812 5.92522 5.95302 6.01251 6.07185 6.10724 6.19460 6.24702 6.25350 6.28028 6.40797 6.43078 6.49150 6.76220 7.06060 7.08848 7.26803 7.38956 7.61696 7.88820 8.02992 8.10272 8.28163 8.54304 8.62829 8.88243 8.97793 10.17774 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.004094 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.849071 B = 6836.950759 C = 8371.177082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.061 4.061 3 C -0.151 4.151 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.134 4.134 7 C 0.085 3.915 8 H 0.086 0.914 9 O -0.364 6.364 10 C 0.458 3.542 11 O -0.493 6.493 12 C -0.043 4.043 13 C -0.193 4.193 14 C -0.077 4.077 15 C -0.240 4.240 16 C -0.104 4.104 17 C -0.159 4.159 18 C 0.131 3.869 19 C -0.458 4.458 20 H 0.074 0.926 21 C 0.078 3.922 22 N -0.792 5.792 23 Si 0.902 3.098 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.261 1.261 27 C -0.104 4.104 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.118 0.882 46 H 0.280 0.720 47 H 0.072 0.928 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.867 -3.450 -12.151 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.061 4.061 3 C -0.208 4.208 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.171 4.171 7 C 0.030 3.970 8 H 0.104 0.896 9 O -0.283 6.283 10 C 0.301 3.699 11 O -0.378 6.378 12 C -0.080 4.080 13 C -0.195 4.195 14 C -0.095 4.095 15 C -0.259 4.259 16 C -0.123 4.123 17 C -0.178 4.178 18 C 0.128 3.872 19 C -0.487 4.487 20 H 0.092 0.908 21 C -0.139 4.139 22 N -0.418 5.418 23 Si 0.726 3.274 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.185 1.185 27 C -0.142 4.142 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.124 0.876 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.135 0.865 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.618 -3.064 -12.106 16.392 hybrid contribution -0.476 0.641 0.206 0.824 sum -11.094 -2.424 -11.900 16.449 Atomic orbital electron populations 1.21841 0.94185 1.01794 1.01847 1.20501 0.95447 0.95636 0.94564 1.22041 1.01884 0.95071 1.01817 1.21641 0.95519 1.00465 0.97072 1.21528 0.95547 1.01245 0.97213 1.21914 1.01364 0.99959 0.93900 1.22643 0.94018 0.97460 0.82831 0.89613 1.86576 1.38077 1.60743 1.42881 1.24440 0.78237 0.81712 0.85542 1.90618 1.59113 1.28652 1.59413 1.19982 0.96969 0.98468 0.92575 1.19055 0.90943 0.99357 1.10121 1.20318 0.92759 0.98028 0.98428 1.20310 0.95719 1.00994 1.08910 1.20696 0.96964 0.96211 0.98418 1.21299 0.91571 1.01270 1.03643 1.17342 0.93183 0.88371 0.88267 1.19479 0.95464 1.26460 1.07324 0.90835 1.25872 0.97021 0.95709 0.95345 1.69813 1.30090 1.33023 1.08835 0.86408 0.81542 0.80048 0.79389 1.19370 1.20000 1.18515 1.21642 0.92994 1.01531 0.97990 0.92459 0.92572 0.92588 0.91793 0.92616 0.92429 0.91782 0.91823 0.91609 0.91329 0.91366 0.91262 0.89501 0.87557 0.89598 0.89538 0.89476 0.86455 0.90860 0.90940 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.48 37.16 0.31 -0.85 16 2 C -0.06 -0.61 0.77 -154.51 -0.12 -0.73 16 3 C -0.15 -1.59 7.78 37.16 0.29 -1.30 16 4 C -0.11 -1.00 4.73 -26.73 -0.13 -1.12 16 5 C -0.12 -1.23 5.65 -26.74 -0.15 -1.38 16 6 C -0.13 -1.73 5.56 -26.74 -0.15 -1.88 16 7 C 0.09 1.28 2.18 -26.73 -0.06 1.22 16 8 H 0.09 1.45 5.44 -51.92 -0.28 1.16 16 9 O -0.36 -6.45 9.88 -39.27 -0.39 -6.83 16 10 C 0.46 9.44 7.56 36.01 0.27 9.71 16 11 O -0.49 -11.67 15.25 -18.75 -0.29 -11.95 16 12 C -0.04 -0.87 5.29 -29.04 -0.15 -1.02 16 13 C -0.19 -4.67 4.43 -103.91 -0.46 -5.13 16 14 C -0.08 -1.77 9.66 -39.66 -0.38 -2.16 16 15 C -0.24 -5.55 10.05 -39.29 -0.39 -5.95 16 16 C -0.10 -2.53 10.02 -39.66 -0.40 -2.93 16 17 C -0.16 -4.22 8.69 -38.87 -0.34 -4.55 16 18 C 0.13 3.49 5.56 -106.82 -0.59 2.90 16 19 C -0.46 -12.06 8.14 -37.74 -0.31 -12.37 16 20 H 0.07 1.90 6.68 -52.49 -0.35 1.55 16 21 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 22 N -0.79 -20.35 10.97 55.55 0.61 -19.74 16 23 Si 0.90 18.84 29.59 -169.99 -5.03 13.81 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 27 C -0.10 -1.25 4.39 -26.73 -0.12 -1.37 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.76 4.80 -51.93 -0.25 0.51 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.09 1.50 8.05 -51.93 -0.42 1.08 16 41 H 0.11 2.15 7.06 -51.93 -0.37 1.78 16 42 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 45 H 0.12 3.20 6.22 -52.49 -0.33 2.87 16 46 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -28.95 375.97 -10.19 -39.15 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.80 Total: 6.95 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -2.96 Total: -27.04 kcal Atomic # 7 Polarization: -20.35 SS G_CDS: 0.61 Total: -19.74 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.67 Total: -18.79 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.95 -10.19 -39.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460729678.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.619 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds