Wall clock time and date at job start Tue Mar 31 2020 11:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46747 * 2 1 4 4 C 1.52995 * 109.47109 * 119.99914 * 2 1 3 5 5 C 1.52998 * 109.47449 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.46844 * 300.00536 * 5 4 2 7 7 C 1.52995 * 109.47536 * 59.99517 * 6 5 4 8 8 H 1.09008 * 109.47251 * 60.00035 * 7 6 5 9 9 O 1.45199 * 109.47628 * 179.97438 * 7 6 5 10 10 C 1.34230 * 116.99843 * 270.00291 * 9 7 6 11 11 O 1.20823 * 120.00234 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99838 * 179.97438 * 10 9 7 13 13 C 1.50697 * 109.46986 * 180.02562 * 12 10 9 14 14 C 1.37644 * 120.12626 * 264.99834 * 13 12 10 15 15 C 1.38608 * 120.24990 * 180.02562 * 14 13 12 16 16 C 1.38661 * 120.50319 * 359.97438 * 15 14 13 17 17 C 1.37599 * 120.24426 * 0.02562 * 16 15 14 18 18 C 1.40701 * 120.13023 * 85.02193 * 13 12 10 19 19 C 1.41387 * 120.24373 * 359.95664 * 18 13 12 20 20 H 1.08005 * 120.00030 * 334.08708 * 19 18 13 21 21 C 1.39947 * 120.00332 * 154.08976 * 19 18 13 22 22 N 1.30829 * 119.99807 * 343.62060 * 21 19 18 23 23 Si 1.86794 * 120.00288 * 163.61626 * 21 19 18 24 24 H 1.48504 * 109.46838 * 90.00146 * 23 21 19 25 25 H 1.48499 * 109.47510 * 210.00191 * 23 21 19 26 26 H 1.48504 * 109.47384 * 330.00231 * 23 21 19 27 27 C 1.52998 * 109.47449 * 300.00113 * 7 6 5 28 28 H 1.09006 * 109.47357 * 299.99907 * 1 2 3 29 29 H 1.09003 * 109.47378 * 60.00074 * 1 2 3 30 30 H 1.09003 * 109.47371 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46185 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47346 * 299.99764 * 3 2 1 33 33 H 1.08997 * 109.46945 * 60.00532 * 3 2 1 34 34 H 1.09002 * 109.46966 * 60.00376 * 4 2 1 35 35 H 1.08997 * 109.47326 * 300.00531 * 4 2 1 36 36 H 1.08996 * 109.47397 * 180.02562 * 5 4 2 37 37 H 1.09000 * 109.47030 * 59.99535 * 5 4 2 38 38 H 1.09002 * 109.47226 * 299.99390 * 6 5 4 39 39 H 1.08999 * 109.46973 * 179.97438 * 6 5 4 40 40 H 1.08990 * 109.47268 * 59.99945 * 12 10 9 41 41 H 1.09005 * 109.47042 * 299.99534 * 12 10 9 42 42 H 1.07997 * 119.87336 * 359.97438 * 14 13 12 43 43 H 1.07997 * 119.75006 * 180.02562 * 15 14 13 44 44 H 1.07995 * 119.87637 * 179.75098 * 16 15 14 45 45 H 1.08008 * 120.12400 * 179.97438 * 17 16 15 46 46 H 0.96995 * 119.99565 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.47397 * 179.97438 * 27 7 6 48 48 H 1.09000 * 109.47030 * 300.00465 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2490 6 6 4.0794 -1.4434 -0.0004 7 6 3.5695 -0.7222 -1.2496 8 1 3.9332 0.3054 -1.2498 9 8 4.0534 -1.4066 -2.4352 10 6 5.2331 -1.0033 -2.9327 11 8 5.8409 -0.1078 -2.3956 12 6 5.7994 -1.6675 -4.1612 13 6 7.1220 -1.0349 -4.5097 14 6 7.1788 -0.0181 -5.4358 15 6 8.3940 0.5652 -5.7587 16 6 9.5647 0.1333 -5.1540 17 6 9.5317 -0.8816 -4.2255 18 6 8.3036 -1.4816 -3.8902 19 6 8.2575 -2.5250 -2.9372 20 1 7.3534 -2.7017 -2.3732 21 6 9.3831 -3.3289 -2.7245 22 7 10.3536 -3.3407 -3.6018 23 14 9.5000 -4.3849 -1.1881 24 1 8.9060 -5.7189 -1.4581 25 1 10.9257 -4.5461 -0.8055 26 1 8.7610 -3.7293 -0.0794 27 6 2.0395 -0.7216 -1.2493 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7489 1.2492 35 1 1.6766 -0.2075 2.1392 36 1 3.9333 -1.2360 2.1387 37 1 3.9337 0.3057 1.2487 38 1 3.7158 -2.4709 -0.0002 39 1 5.1694 -1.4434 -0.0008 40 1 5.1065 -1.5436 -4.9933 41 1 5.9456 -2.7298 -3.9652 42 1 6.2732 0.3258 -5.9132 43 1 8.4292 1.3627 -6.4861 44 1 10.5065 0.5922 -5.4162 45 1 10.4448 -1.2167 -3.7560 46 1 11.1340 -3.8976 -3.4541 47 1 1.6762 -0.2074 -2.1391 48 1 1.6758 -1.7491 -1.2490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460729680.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:38 Heat of formation + Delta-G solvation = -103.805434 kcal Electronic energy + Delta-G solvation = -27092.874581 eV Core-core repulsion = 23496.879430 eV Total energy + Delta-G solvation = -3595.995151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.37682 -38.98709 -37.53057 -35.66002 -33.64961 -32.97550 -31.82151 -30.25949 -29.48402 -27.51879 -27.02631 -26.48464 -25.08359 -22.80344 -21.74288 -20.96732 -20.49055 -19.35439 -18.47829 -17.19384 -17.01841 -16.10433 -15.65200 -15.32058 -14.89135 -14.77210 -14.48698 -14.33478 -13.84459 -13.81252 -13.55214 -13.17683 -12.85915 -12.60010 -12.54997 -12.19689 -12.05659 -11.84749 -11.67897 -11.59235 -11.57055 -11.26309 -11.11307 -11.07635 -11.03198 -10.98805 -10.76135 -10.64189 -10.56928 -10.41800 -10.12688 -9.82252 -9.60277 -9.51091 -9.40328 -9.17483 -7.35871 -7.33243 -6.76496 -4.37801 2.71188 2.88323 3.01797 3.06104 3.11083 3.25522 3.39954 3.92589 4.48241 4.54987 4.62004 4.66573 4.95869 5.01359 5.19984 5.22831 5.27470 5.35504 5.46766 5.49914 5.53627 5.60087 5.70109 5.75820 5.78375 5.84713 5.89395 5.92560 5.95302 6.00055 6.09085 6.12626 6.22596 6.24230 6.27784 6.28750 6.41898 6.43521 6.49204 6.76229 7.06021 7.08980 7.26768 7.38939 7.61651 7.88826 8.02937 8.10254 8.28113 8.54351 8.62793 8.88186 8.97787 10.17671 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.003971 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.581673 B = 7048.797843 C = 8432.015622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.061 4.061 3 C -0.150 4.150 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.137 4.137 7 C 0.087 3.913 8 H 0.084 0.916 9 O -0.364 6.364 10 C 0.458 3.542 11 O -0.493 6.493 12 C -0.043 4.043 13 C -0.193 4.193 14 C -0.077 4.077 15 C -0.240 4.240 16 C -0.104 4.104 17 C -0.159 4.159 18 C 0.131 3.869 19 C -0.458 4.458 20 H 0.074 0.926 21 C 0.078 3.922 22 N -0.792 5.792 23 Si 0.902 3.098 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.261 1.261 27 C -0.103 4.103 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.118 0.882 46 H 0.280 0.720 47 H 0.069 0.931 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.029 2.465 7.036 16.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.062 4.062 3 C -0.208 4.208 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.174 4.174 7 C 0.032 3.968 8 H 0.102 0.898 9 O -0.283 6.283 10 C 0.301 3.699 11 O -0.378 6.378 12 C -0.080 4.080 13 C -0.195 4.195 14 C -0.095 4.095 15 C -0.259 4.259 16 C -0.123 4.123 17 C -0.178 4.178 18 C 0.129 3.871 19 C -0.487 4.487 20 H 0.092 0.908 21 C -0.140 4.140 22 N -0.418 5.418 23 Si 0.726 3.274 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.185 1.185 27 C -0.141 4.141 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.124 0.876 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.135 0.865 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.625 2.631 7.179 16.503 hybrid contribution 0.279 -0.429 0.718 0.882 sum -14.346 2.202 7.897 16.524 Atomic orbital electron populations 1.21844 0.94209 1.01823 1.01771 1.20500 0.95400 0.95590 0.94664 1.22036 1.01907 0.95100 1.01709 1.21646 0.95639 1.00484 0.96966 1.21528 0.95378 1.01200 0.97407 1.21935 1.01848 0.99976 0.93689 1.22632 0.93847 0.97286 0.83044 0.89786 1.86575 1.37980 1.60938 1.42807 1.24438 0.78071 0.81594 0.85832 1.90618 1.58501 1.29144 1.59538 1.19983 0.95270 1.01320 0.91425 1.19058 0.92641 1.03896 1.03890 1.20321 0.95960 0.95752 0.97505 1.20309 0.93188 1.05304 1.07121 1.20697 0.96067 0.97644 0.97879 1.21300 0.98736 0.97014 1.00759 1.17336 0.90303 0.90180 0.89322 1.19480 0.98370 1.12231 1.18638 0.90824 1.25875 0.94802 0.96693 0.96580 1.69817 1.07172 1.32816 1.31970 0.86408 0.78461 0.80122 0.82395 1.19375 1.20006 1.18503 1.21638 0.93053 1.01564 0.97810 0.92558 0.92552 0.92561 0.91775 0.92578 0.92591 0.91753 0.91833 0.91532 0.91385 0.91166 0.90946 0.89504 0.87552 0.89590 0.89539 0.89473 0.86464 0.90862 0.91238 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.47 37.16 0.31 -0.79 16 2 C -0.06 -0.59 0.77 -154.51 -0.12 -0.71 16 3 C -0.15 -1.48 7.78 37.16 0.29 -1.20 16 4 C -0.11 -1.03 4.73 -26.73 -0.13 -1.16 16 5 C -0.12 -1.32 5.65 -26.73 -0.15 -1.47 16 6 C -0.14 -1.94 5.56 -26.73 -0.15 -2.09 16 7 C 0.09 1.30 2.18 -26.73 -0.06 1.24 16 8 H 0.08 1.37 5.44 -51.92 -0.28 1.09 16 9 O -0.36 -6.45 9.88 -39.26 -0.39 -6.84 16 10 C 0.46 9.44 7.56 36.01 0.27 9.71 16 11 O -0.49 -11.66 15.25 -18.75 -0.29 -11.95 16 12 C -0.04 -0.87 5.29 -29.03 -0.15 -1.02 16 13 C -0.19 -4.67 4.43 -103.91 -0.46 -5.13 16 14 C -0.08 -1.78 9.66 -39.66 -0.38 -2.16 16 15 C -0.24 -5.55 10.05 -39.29 -0.39 -5.95 16 16 C -0.10 -2.53 10.02 -39.66 -0.40 -2.93 16 17 C -0.16 -4.22 8.69 -38.87 -0.34 -4.56 16 18 C 0.13 3.49 5.56 -106.83 -0.59 2.90 16 19 C -0.46 -12.05 8.14 -37.74 -0.31 -12.35 16 20 H 0.07 1.89 6.68 -52.48 -0.35 1.54 16 21 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 22 N -0.79 -20.36 10.97 55.55 0.61 -19.75 16 23 Si 0.90 18.83 29.59 -169.99 -5.03 13.80 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 27 C -0.10 -1.20 4.39 -26.73 -0.12 -1.31 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.73 4.81 -51.93 -0.25 0.48 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.09 1.50 8.05 -51.93 -0.42 1.08 16 41 H 0.11 2.15 7.06 -51.93 -0.37 1.79 16 42 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 45 H 0.12 3.19 6.22 -52.48 -0.33 2.87 16 46 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -28.94 375.97 -10.19 -39.13 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -7.80 Total: 7.03 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -2.96 Total: -27.10 kcal Atomic # 7 Polarization: -20.36 SS G_CDS: 0.61 Total: -19.75 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.67 Total: -18.79 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.94 -10.19 -39.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460729680.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.673 kcal (2) G-P(sol) polarization free energy of solvation -28.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds