Wall clock time and date at job start Tue Mar 31 2020 11:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00046 * 2 1 4 4 C 1.50700 * 119.99903 * 180.02562 * 2 1 3 5 5 N 1.46494 * 109.47284 * 94.99784 * 4 2 1 6 6 C 1.36709 * 127.13944 * 269.71183 * 5 4 2 7 7 C 1.50709 * 126.33901 * 0.02873 * 6 5 4 8 8 C 1.52994 * 109.47135 * 90.00368 * 7 6 5 9 9 C 1.50694 * 109.47399 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99729 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00262 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00015 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 119.99923 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47351 * 89.99976 * 13 11 9 15 15 H 1.48498 * 109.47228 * 210.00097 * 13 11 9 16 16 H 1.48498 * 109.47335 * 330.00152 * 13 11 9 17 17 N 1.30308 * 107.31449 * 179.89481 * 6 5 4 18 18 N 1.28520 * 110.05826 * 0.37735 * 17 6 5 19 19 C 1.31237 * 109.85297 * 359.76229 * 18 17 6 20 20 N 1.38642 * 126.47548 * 180.02562 * 19 18 17 21 21 C 1.40053 * 120.00192 * 359.97438 * 20 19 18 22 22 C 1.40429 * 125.97519 * 359.70988 * 21 20 19 23 23 C 1.35237 * 107.86397 * 179.83157 * 22 21 20 24 24 N 1.34965 * 107.86779 * 0.43135 * 23 22 21 25 25 C 1.46496 * 125.97423 * 179.69474 * 24 23 22 26 26 N 1.31232 * 125.97669 * 180.02562 * 21 20 19 27 27 H 1.08005 * 119.99846 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.00080 * 179.72892 * 1 2 3 29 29 H 1.08999 * 109.47280 * 90.00097 * 3 2 1 30 30 H 1.08997 * 109.47027 * 210.00056 * 3 2 1 31 31 H 1.09000 * 109.47497 * 330.00290 * 3 2 1 32 32 H 1.08999 * 109.47155 * 215.00070 * 4 2 1 33 33 H 1.09007 * 109.46811 * 335.00207 * 4 2 1 34 34 H 1.08999 * 109.46765 * 209.99965 * 7 6 5 35 35 H 1.09002 * 109.47373 * 329.99975 * 7 6 5 36 36 H 1.09003 * 109.47401 * 300.00089 * 8 7 6 37 37 H 1.09002 * 109.47311 * 59.99569 * 8 7 6 38 38 H 0.97002 * 119.99860 * 180.02562 * 12 11 9 39 39 H 0.97001 * 119.99846 * 179.97438 * 20 19 18 40 40 H 1.08006 * 126.06852 * 0.02562 * 22 21 20 41 41 H 1.08004 * 126.06275 * 180.14241 * 23 22 21 42 42 H 1.09003 * 109.46656 * 270.01309 * 25 24 23 43 43 H 1.09001 * 109.47151 * 30.01002 * 25 24 23 44 44 H 1.09001 * 109.47096 * 150.01880 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4119 -1.6673 -1.3766 6 6 1.6704 -2.4186 -2.2453 7 6 0.3249 -3.0378 -1.9667 8 6 -0.7798 -2.0520 -2.3522 9 6 -2.1252 -2.6713 -2.0742 10 1 -2.1862 -3.6686 -1.6640 11 6 -3.2782 -1.9649 -2.3435 12 7 -4.4523 -2.5056 -2.1014 13 14 -3.1726 -0.2404 -3.0535 14 1 -3.1680 -0.3151 -4.5367 15 1 -4.3433 0.5535 -2.6016 16 1 -1.9226 0.4114 -2.5869 17 7 2.3412 -2.4978 -3.3597 18 7 3.4512 -1.8591 -3.2524 19 6 3.5468 -1.3295 -2.0554 20 7 4.6010 -0.5698 -1.5720 21 6 5.7058 -0.3039 -2.3907 22 6 5.8789 -0.7466 -3.7121 23 6 7.0678 -0.2778 -4.1543 24 7 7.6339 0.4267 -3.1519 25 6 8.9324 1.1030 -3.2018 26 7 6.7629 0.3976 -2.0551 27 1 -0.5400 0.9354 -0.0004 28 1 -0.5400 -0.9352 -0.0044 29 1 2.2452 1.6197 1.0276 30 1 3.0159 1.1747 -0.5138 31 1 1.4745 2.0648 -0.5138 32 1 2.9742 -1.1992 0.5889 33 1 1.4385 -2.0857 0.4334 34 1 0.2172 -3.9512 -2.5518 35 1 0.2466 -3.2747 -0.9056 36 1 -0.6720 -1.1386 -1.7672 37 1 -0.7014 -1.8152 -3.4133 38 1 -5.2635 -2.0088 -2.2912 39 1 4.5734 -0.2224 -0.6667 40 1 5.1842 -1.3513 -4.2763 41 1 7.4915 -0.4423 -5.1340 42 1 9.7124 0.4164 -2.8727 43 1 9.1368 1.4221 -4.2238 44 1 8.9142 1.9734 -2.5459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524089743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:32 Heat of formation + Delta-G solvation = 192.934618 kcal Electronic energy + Delta-G solvation = -26402.172653 eV Core-core repulsion = 22780.090276 eV Total energy + Delta-G solvation = -3622.082377 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.68199 -41.14896 -36.91866 -36.35505 -34.09476 -33.32906 -32.47949 -31.63291 -30.24181 -28.61006 -27.59682 -26.82908 -26.27988 -25.51100 -22.29936 -21.97047 -21.03942 -20.41322 -19.66901 -18.76661 -17.54757 -17.31312 -16.91422 -16.11873 -15.90622 -15.71236 -15.53678 -14.66616 -14.30560 -14.26332 -13.78587 -13.50292 -13.39867 -13.26797 -13.18542 -13.02997 -12.70472 -12.64194 -12.10654 -12.03438 -11.81218 -11.43604 -11.32244 -11.07336 -11.04928 -10.65963 -10.34620 -10.21063 -9.90868 -9.81259 -9.79814 -9.35776 -9.21295 -9.03385 -8.58060 -8.56399 -7.55324 -6.10183 -4.08974 1.66831 1.75080 2.08508 2.25089 2.73000 2.97150 3.28333 3.36112 3.37681 3.39582 3.40154 4.40670 4.44222 4.47095 4.64160 4.69920 4.87632 4.89152 5.05644 5.11973 5.16607 5.24692 5.29218 5.32443 5.41207 5.46499 5.55468 5.77571 5.85178 5.88058 6.05394 6.11403 6.22840 6.31948 6.53201 6.59810 6.61807 6.76276 6.86967 6.98237 7.19531 7.20823 7.25043 7.32052 7.69991 7.79792 8.44558 8.93796 9.19266 9.51977 11.02665 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020160 B = 0.003339 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.556347 B = 8384.308061 C = 8764.566761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.189 4.189 3 C -0.112 4.112 4 C 0.148 3.852 5 N -0.488 5.488 6 C 0.206 3.794 7 C -0.020 4.020 8 C -0.015 4.015 9 C -0.521 4.521 10 H 0.075 0.925 11 C 0.073 3.927 12 N -0.899 5.899 13 Si 0.873 3.127 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.265 1.265 17 N -0.288 5.288 18 N -0.322 5.322 19 C 0.420 3.580 20 N -0.605 5.605 21 C 0.333 3.667 22 C -0.268 4.268 23 C 0.063 3.937 24 N -0.379 5.379 25 C 0.109 3.891 26 N -0.340 5.340 27 H 0.102 0.898 28 H 0.125 0.875 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.029 0.971 37 H 0.019 0.981 38 H 0.264 0.736 39 H 0.417 0.583 40 H 0.179 0.821 41 H 0.176 0.824 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.168 7.733 3.660 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.190 4.190 3 C -0.169 4.169 4 C 0.026 3.974 5 N -0.186 5.186 6 C -0.061 4.061 7 C -0.060 4.060 8 C -0.053 4.053 9 C -0.558 4.558 10 H 0.093 0.907 11 C -0.129 4.129 12 N -0.538 5.538 13 Si 0.700 3.300 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.189 1.189 17 N -0.124 5.124 18 N -0.168 5.168 19 C 0.064 3.936 20 N -0.244 5.244 21 C 0.076 3.924 22 C -0.299 4.299 23 C -0.082 4.082 24 N -0.163 5.163 25 C -0.032 4.032 26 N -0.172 5.172 27 H 0.120 0.880 28 H 0.143 0.857 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.255 0.745 40 H 0.196 0.804 41 H 0.193 0.807 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 24.064 8.060 2.984 25.553 hybrid contribution -0.767 1.165 0.721 1.570 sum 23.297 9.224 3.705 25.329 Atomic orbital electron populations 1.24279 0.95012 1.04029 0.93288 1.21653 0.95767 0.94606 1.06927 1.20788 0.99716 0.94685 1.01704 1.20782 1.00828 0.96368 0.79431 1.46286 1.15444 1.42794 1.14087 1.25363 0.97625 0.96804 0.86347 1.20199 0.84183 0.99757 1.01883 1.19785 0.93312 0.94999 0.97224 1.21011 0.88274 1.03250 1.43311 0.90670 1.24935 0.95315 0.97758 0.94893 1.69898 0.97481 1.37838 1.48565 0.86888 0.77688 0.85250 0.80165 1.20165 1.21440 1.18942 1.74033 1.00459 1.18548 1.19391 1.74459 1.14609 1.15760 1.11961 1.20502 0.84498 0.98309 0.90325 1.39223 1.14274 1.55532 1.15391 1.18716 0.87118 0.95850 0.90697 1.21900 1.00466 1.12092 0.95465 1.22516 0.94703 0.96092 0.94907 1.47961 1.16333 1.42967 1.09089 1.21763 0.80128 0.97669 1.03680 1.77292 1.02385 1.28064 1.09418 0.87955 0.85679 0.91410 0.92752 0.91689 0.89239 0.87272 0.88735 0.90884 0.95335 0.96262 0.92644 0.74487 0.80425 0.80682 0.91124 0.89555 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 11.86 29.01 0.34 -1.52 16 2 C -0.19 -2.42 5.63 -101.07 -0.57 -2.99 16 3 C -0.11 -1.25 10.03 36.00 0.36 -0.88 16 4 C 0.15 1.79 6.04 -5.20 -0.03 1.76 16 5 N -0.49 -7.64 2.79 -115.34 -0.32 -7.97 16 6 C 0.21 3.84 7.32 -154.03 -1.13 2.71 16 7 C -0.02 -0.39 5.53 -27.88 -0.15 -0.54 16 8 C -0.01 -0.34 3.81 -27.89 -0.11 -0.44 16 9 C -0.52 -13.83 9.66 -34.44 -0.33 -14.17 16 10 H 0.08 2.13 7.99 -52.48 -0.42 1.71 16 11 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 12 N -0.90 -26.69 13.96 55.43 0.77 -25.92 16 13 Si 0.87 21.24 27.47 -169.99 -4.67 16.57 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 17 N -0.29 -5.89 12.18 32.99 0.40 -5.48 16 18 N -0.32 -6.11 9.17 30.34 0.28 -5.83 16 19 C 0.42 6.89 8.57 -318.72 -2.73 4.16 16 20 N -0.61 -8.37 5.25 -12.24 -0.06 -8.43 16 21 C 0.33 4.84 8.12 -154.47 -1.25 3.59 16 22 C -0.27 -3.79 9.78 -39.83 -0.39 -4.18 16 23 C 0.06 0.67 11.48 -17.24 -0.20 0.48 16 24 N -0.38 -4.09 4.01 -68.18 -0.27 -4.36 16 25 C 0.11 0.63 11.47 59.84 0.69 1.32 16 26 N -0.34 -4.65 12.59 31.42 0.40 -4.25 16 27 H 0.10 1.44 8.04 -52.48 -0.42 1.01 16 28 H 0.13 2.02 6.64 -52.49 -0.35 1.67 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.61 6.73 -51.93 -0.35 0.26 16 31 H 0.06 0.76 8.06 -51.93 -0.42 0.35 16 32 H 0.09 0.82 7.65 -51.93 -0.40 0.42 16 33 H 0.11 1.23 7.09 -51.92 -0.37 0.86 16 34 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 35 H 0.07 1.23 7.26 -51.93 -0.38 0.85 16 36 H 0.03 0.62 3.50 -51.93 -0.18 0.44 16 37 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.42 4.74 7.29 -40.82 -0.30 4.45 16 40 H 0.18 2.81 5.93 -52.48 -0.31 2.50 16 41 H 0.18 1.16 8.06 -52.48 -0.42 0.74 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -34.39 363.76 -9.59 -43.97 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.99 Total: 5.01 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -5.60 Total: -8.79 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: 1.19 Total: -62.24 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.39 -9.59 -43.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524089743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.906 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 202.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds