Wall clock time and date at job start Tue Mar 31 2020 12:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46596 * 2 1 4 4 C 1.52992 * 109.47405 * 239.99557 * 2 1 3 5 5 C 1.53004 * 109.47223 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46980 * 59.99730 * 5 4 2 7 7 C 1.53001 * 109.47334 * 300.00367 * 6 5 4 8 8 C 1.52997 * 109.47129 * 59.99817 * 7 6 5 9 9 H 1.09006 * 109.47416 * 60.00003 * 8 7 6 10 10 C 1.53001 * 109.47129 * 179.97438 * 8 7 6 11 11 C 1.50702 * 109.46856 * 295.00099 * 10 8 7 12 12 O 1.20822 * 120.00007 * 359.97438 * 11 10 8 13 13 O 1.34228 * 119.99472 * 180.02562 * 11 10 8 14 14 C 1.45203 * 116.99776 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47065 * 180.02562 * 14 13 11 16 16 C 1.38638 * 119.74593 * 269.71843 * 15 14 13 17 17 C 1.37627 * 120.25049 * 179.76385 * 16 15 14 18 18 C 1.40718 * 119.73921 * 0.48833 * 17 16 15 19 19 C 1.41395 * 120.24104 * 179.78449 * 18 17 16 20 20 H 1.07999 * 120.00057 * 204.37005 * 19 18 17 21 21 C 1.39953 * 119.99794 * 24.37226 * 19 18 17 22 22 N 1.30820 * 119.99690 * 17.85846 * 21 19 18 23 23 Si 1.86800 * 119.99870 * 197.85547 * 21 19 18 24 24 H 1.48506 * 109.46791 * 60.00317 * 23 21 19 25 25 H 1.48493 * 109.47255 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47103 * 300.00497 * 23 21 19 27 27 C 1.40712 * 119.51123 * 359.76876 * 18 17 16 28 28 C 1.37617 * 119.74889 * 359.97438 * 27 18 17 29 29 H 1.08996 * 109.47486 * 300.00334 * 1 2 3 30 30 H 1.08998 * 109.47320 * 60.00911 * 1 2 3 31 31 H 1.09006 * 109.46596 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47587 * 299.99849 * 4 2 1 33 33 H 1.09004 * 109.47447 * 60.00191 * 4 2 1 34 34 H 1.08996 * 109.47304 * 180.02562 * 5 4 2 35 35 H 1.09006 * 109.47341 * 300.00173 * 5 4 2 36 36 H 1.08996 * 109.47036 * 179.97438 * 6 5 4 37 37 H 1.09006 * 109.46606 * 60.00607 * 6 5 4 38 38 H 1.08996 * 109.46794 * 300.00054 * 7 6 5 39 39 H 1.09001 * 109.46966 * 179.97438 * 7 6 5 40 40 H 1.09002 * 109.47053 * 54.99914 * 10 8 7 41 41 H 1.09004 * 109.47061 * 175.00038 * 10 8 7 42 42 H 1.09003 * 109.46797 * 299.99371 * 14 13 11 43 43 H 1.08994 * 109.47046 * 59.99628 * 14 13 11 44 44 H 1.08000 * 119.87459 * 0.02562 * 16 15 14 45 45 H 1.07992 * 120.12966 * 180.23501 * 17 16 15 46 46 H 0.97009 * 119.99198 * 180.02562 * 22 21 19 47 47 H 1.08007 * 120.12225 * 180.02562 * 27 18 17 48 48 H 1.08004 * 119.87347 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2494 6 6 4.0806 -1.4414 0.0000 7 6 3.5704 -0.7201 1.2492 8 6 2.0405 -0.7207 1.2494 9 1 1.6775 -1.7486 1.2496 10 6 1.5304 0.0000 2.4989 11 6 1.9296 -0.7784 3.7259 12 8 2.5572 -1.8046 3.6126 13 8 1.5869 -0.3322 4.9446 14 6 2.0055 -1.1327 6.0814 15 6 1.5341 -0.4808 7.3557 16 6 2.3489 0.4363 8.0014 17 6 1.9267 1.0415 9.1632 18 6 0.6670 0.7184 9.7006 19 6 0.2246 1.3304 10.8960 20 1 -0.5113 0.8380 11.5145 21 6 0.7402 2.5742 11.2777 22 7 1.3461 3.3291 10.3976 23 14 0.5632 3.1565 13.0438 24 1 1.2377 2.1945 13.9521 25 1 1.1891 4.4953 13.1887 26 1 -0.8771 3.2421 13.3948 27 6 -0.1493 -0.2178 9.0394 28 6 0.2912 -0.8066 7.8762 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.6768 -1.7489 -1.2491 33 1 1.6768 -0.2075 -2.1392 34 1 3.9335 -1.2342 -2.1395 35 1 3.9331 0.3071 -1.2496 36 1 5.1705 -1.4414 -0.0004 37 1 3.7176 -2.4693 0.0002 38 1 3.9334 0.3076 1.2488 39 1 3.9338 -1.2339 2.1392 40 1 1.9646 0.9987 2.5449 41 1 0.4440 0.0778 2.4554 42 1 1.5729 -2.1301 6.0024 43 1 3.0928 -1.2081 6.0921 44 1 3.3169 0.6799 7.5890 45 1 2.5614 1.7584 9.6625 46 1 1.7038 4.1910 10.6624 47 1 -1.1181 -0.4728 9.4430 48 1 -0.3338 -1.5252 7.3668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536934937.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:41 Heat of formation + Delta-G solvation = -111.979612 kcal Electronic energy + Delta-G solvation = -25675.577476 eV Core-core repulsion = 22079.227866 eV Total energy + Delta-G solvation = -3596.349609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.42350 -38.93424 -37.63658 -35.99659 -33.86686 -33.33868 -32.20608 -30.80220 -29.37125 -28.33494 -27.05447 -26.06751 -23.86660 -22.48400 -21.36632 -21.08536 -20.30942 -20.03002 -19.81288 -17.40008 -17.28382 -16.20579 -16.15130 -15.35739 -15.23325 -14.78820 -14.51549 -14.27725 -14.21238 -13.90448 -13.68132 -13.38532 -12.82501 -12.65093 -12.37269 -12.30563 -12.22609 -12.03057 -11.97116 -11.75776 -11.68422 -11.62623 -11.16860 -11.14632 -11.02255 -10.98502 -10.82881 -10.58859 -10.48653 -10.42216 -10.14213 -10.08553 -9.88406 -9.64944 -9.46556 -9.21644 -7.56235 -7.45008 -6.86590 -4.46405 2.47919 2.51738 2.97734 3.00451 3.02285 3.05454 3.43252 3.85445 4.41462 4.46550 4.50785 4.60231 4.84801 4.93144 5.04049 5.18748 5.22212 5.29363 5.36477 5.38323 5.46661 5.54802 5.61367 5.61517 5.63486 5.68665 5.73369 5.74729 5.86126 5.90493 6.01467 6.02423 6.06168 6.11807 6.16597 6.25507 6.31315 6.32637 6.37162 6.86645 6.96237 6.97662 7.18608 7.26790 7.51641 7.74376 7.95536 8.01336 8.15096 8.19329 8.53798 8.78509 8.86924 10.07164 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.027681 B = 0.002152 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.273630 B =13007.705252 C =13090.232463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.087 4.087 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.116 4.116 7 C -0.123 4.123 8 C -0.068 4.068 9 H 0.079 0.921 10 C -0.117 4.117 11 C 0.455 3.545 12 O -0.519 6.519 13 O -0.352 6.352 14 C 0.136 3.864 15 C -0.235 4.235 16 C -0.076 4.076 17 C -0.171 4.171 18 C 0.118 3.882 19 C -0.457 4.457 20 H 0.080 0.920 21 C 0.075 3.925 22 N -0.785 5.785 23 Si 0.911 3.089 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.264 1.264 27 C -0.230 4.230 28 C -0.064 4.064 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.120 0.880 46 H 0.283 0.717 47 H 0.095 0.905 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.048 -3.611 -18.313 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.161 4.161 8 C -0.086 4.086 9 H 0.097 0.903 10 C -0.155 4.155 11 C 0.298 3.702 12 O -0.409 6.409 13 O -0.268 6.268 14 C 0.064 3.936 15 C -0.237 4.237 16 C -0.095 4.095 17 C -0.190 4.190 18 C 0.115 3.885 19 C -0.485 4.485 20 H 0.098 0.902 21 C -0.144 4.144 22 N -0.410 5.410 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.189 1.189 27 C -0.250 4.250 28 C -0.083 4.083 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.138 0.862 46 H 0.094 0.906 47 H 0.113 0.887 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.342 -3.676 -18.320 18.831 hybrid contribution -0.048 0.335 0.807 0.876 sum 2.294 -3.341 -17.512 17.975 Atomic orbital electron populations 1.21947 0.95225 1.02031 1.01917 1.21159 0.95461 0.99667 0.94244 0.90978 1.21566 0.95543 1.00688 0.97163 1.21561 0.95676 1.00717 0.97855 1.21491 0.99993 0.99524 0.94387 1.21745 0.94579 1.00679 0.99077 1.21010 0.96077 0.99817 0.91742 0.90280 1.21586 1.03971 1.00238 0.89705 1.23694 0.76426 0.84276 0.85768 1.90580 1.37920 1.24886 1.87544 1.86728 1.71716 1.53512 1.14871 1.21696 0.98353 0.92418 0.81108 1.18691 0.98897 1.08784 0.97295 1.20540 0.97447 0.95460 0.96004 1.21296 0.97017 1.03031 0.97645 1.17680 0.90300 0.89212 0.91278 1.19642 1.21163 1.02230 1.05513 0.90210 1.25975 0.92956 0.96279 0.99205 1.69825 1.27076 1.09259 1.34811 0.86323 0.79722 0.78211 0.82262 1.18706 1.20238 1.18887 1.20961 0.99767 1.05924 0.98338 1.20388 0.94075 0.97992 0.95808 0.92085 0.92679 0.92597 0.91975 0.92091 0.92332 0.92112 0.92260 0.92035 0.92438 0.90025 0.87973 0.87659 0.92219 0.92151 0.89362 0.86238 0.90583 0.88728 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.85 37.16 0.33 -0.86 16 2 C -0.09 -0.72 2.25 -90.62 -0.20 -0.92 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 4 C -0.11 -0.86 5.20 -26.73 -0.14 -1.00 16 5 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 6 C -0.12 -1.08 5.92 -26.73 -0.16 -1.23 16 7 C -0.12 -1.33 4.95 -26.73 -0.13 -1.47 16 8 C -0.07 -0.70 1.37 -90.62 -0.12 -0.83 16 9 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 10 C -0.12 -1.35 5.07 -27.88 -0.14 -1.49 16 11 C 0.45 7.18 7.67 36.01 0.28 7.46 16 12 O -0.52 -9.06 13.72 -18.75 -0.26 -9.32 16 13 O -0.35 -6.55 10.20 -39.25 -0.40 -6.95 16 14 C 0.14 2.63 5.58 36.00 0.20 2.83 16 15 C -0.24 -5.24 5.54 -104.33 -0.58 -5.82 16 16 C -0.08 -1.78 9.67 -39.66 -0.38 -2.16 16 17 C -0.17 -4.39 8.70 -38.87 -0.34 -4.73 16 18 C 0.12 3.11 5.58 -106.83 -0.60 2.51 16 19 C -0.46 -11.85 9.05 -37.74 -0.34 -12.19 16 20 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 21 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 22 N -0.79 -19.86 10.95 55.55 0.61 -19.25 16 23 Si 0.91 18.15 29.60 -169.99 -5.03 13.11 16 24 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 25 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 27 C -0.23 -5.61 9.80 -38.87 -0.38 -5.99 16 28 C -0.06 -1.45 9.67 -39.66 -0.38 -1.83 16 29 H 0.06 0.47 6.32 -51.93 -0.33 0.14 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.09 5.96 -51.93 -0.31 0.78 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.11 1.08 6.18 -51.93 -0.32 0.76 16 42 H 0.06 1.09 8.07 -51.93 -0.42 0.68 16 43 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 44 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 45 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 46 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 47 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 48 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -27.71 380.36 -10.69 -38.40 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -8.00 Total: 5.36 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -3.34 Total: -27.09 kcal Atomic # 7 Polarization: -19.86 SS G_CDS: 0.61 Total: -19.25 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.66 Total: -16.26 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.71 -10.69 -38.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536934937.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.580 kcal (2) G-P(sol) polarization free energy of solvation -27.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds