Wall clock time and date at job start Tue Mar 31 2020 12:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47667 * 2 1 4 4 C 1.53004 * 109.46973 * 120.00005 * 2 1 3 5 5 C 1.53003 * 109.47018 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47220 * 299.99937 * 5 4 2 7 7 C 1.52995 * 109.46965 * 59.99948 * 6 5 4 8 8 C 1.53001 * 109.47563 * 300.00042 * 7 6 5 9 9 H 1.09006 * 109.46841 * 300.00285 * 8 7 6 10 10 C 1.52995 * 109.47563 * 180.02562 * 8 7 6 11 11 C 1.50705 * 109.46927 * 64.99925 * 10 8 7 12 12 O 1.20824 * 120.00188 * 0.02562 * 11 10 8 13 13 O 1.34232 * 119.99846 * 179.97438 * 11 10 8 14 14 C 1.45198 * 116.99974 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.46976 * 180.02562 * 14 13 11 16 16 C 1.38634 * 119.74697 * 270.25110 * 15 14 13 17 17 C 1.37623 * 120.24461 * 180.26207 * 16 15 14 18 18 C 1.40718 * 119.74579 * 359.46564 * 17 16 15 19 19 C 1.41389 * 120.24328 * 180.30009 * 18 17 16 20 20 H 1.08001 * 120.00162 * 204.38017 * 19 18 17 21 21 C 1.39949 * 120.00340 * 24.37755 * 19 18 17 22 22 N 1.30825 * 119.99385 * 17.86451 * 21 19 18 23 23 Si 1.86795 * 120.00110 * 197.86331 * 21 19 18 24 24 H 1.48497 * 109.47502 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47155 * 120.00227 * 23 21 19 26 26 H 1.48506 * 109.47081 * 239.99913 * 23 21 19 27 27 C 1.40710 * 119.50993 * 0.28058 * 18 17 16 28 28 C 1.37619 * 119.74773 * 359.97438 * 27 18 17 29 29 H 1.09000 * 109.47665 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46700 * 300.00130 * 1 2 3 31 31 H 1.08996 * 109.47045 * 59.99392 * 1 2 3 32 32 H 1.08995 * 109.47584 * 299.99597 * 4 2 1 33 33 H 1.09002 * 109.46937 * 59.99954 * 4 2 1 34 34 H 1.08995 * 109.47348 * 60.00163 * 5 4 2 35 35 H 1.09002 * 109.46672 * 180.02562 * 5 4 2 36 36 H 1.08999 * 109.46771 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.46742 * 300.00102 * 6 5 4 38 38 H 1.09003 * 109.47189 * 180.02562 * 7 6 5 39 39 H 1.09006 * 109.47274 * 60.00062 * 7 6 5 40 40 H 1.08997 * 109.46965 * 305.00137 * 10 8 7 41 41 H 1.08997 * 109.47255 * 185.00117 * 10 8 7 42 42 H 1.08997 * 109.47177 * 60.00194 * 14 13 11 43 43 H 1.09006 * 109.46901 * 300.00056 * 14 13 11 44 44 H 1.08000 * 119.87824 * 0.02562 * 16 15 14 45 45 H 1.08000 * 120.12792 * 179.74481 * 17 16 15 46 46 H 0.96998 * 119.99364 * 179.97438 * 22 21 19 47 47 H 1.08000 * 120.12757 * 180.02562 * 27 18 17 48 48 H 1.08003 * 119.87857 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7218 1.2490 6 6 4.0795 -1.4435 -0.0003 7 6 3.5695 -0.7223 -1.2495 8 6 2.0395 -0.7216 -1.2493 9 1 1.6758 -1.7492 -1.2490 10 6 1.5295 -0.0010 -2.4988 11 6 1.9277 -0.7802 -3.7257 12 8 2.5546 -1.8068 -3.6124 13 8 1.5850 -0.3342 -4.9445 14 6 2.0016 -1.1360 -6.0811 15 6 1.5314 -0.4834 -7.3555 16 6 0.2857 -0.8032 -7.8731 17 6 -0.1517 -0.2175 -9.0391 18 6 0.6661 0.7175 -9.7002 19 6 0.2246 1.3304 -10.8954 20 1 0.9442 1.7193 -11.6006 21 6 -1.1449 1.4331 -11.1647 22 7 -2.0139 1.2949 -10.1966 23 14 -1.7318 1.7676 -12.9062 24 1 -0.5595 1.8817 -13.8104 25 1 -2.5990 0.6505 -13.3594 26 1 -2.5039 3.0359 -12.9333 27 6 1.9264 1.0383 -9.1628 28 6 2.3455 0.4363 -7.9984 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6767 -0.2075 2.1393 33 1 1.6766 -1.7489 1.2492 34 1 3.9337 0.3056 1.2488 35 1 3.9332 -1.2361 2.1388 36 1 5.1695 -1.4442 -0.0002 37 1 3.7158 -2.4710 0.0000 38 1 3.9321 -1.2366 -2.1395 39 1 3.9332 0.3053 -1.2497 40 1 1.9645 0.9973 -2.5453 41 1 0.4433 0.0777 -2.4549 42 1 1.5676 -2.1326 -6.0012 43 1 3.0889 -1.2130 -6.0924 44 1 -0.3423 -1.5175 -7.3614 45 1 -1.1208 -0.4711 -9.4428 46 1 -2.9631 1.3665 -10.3831 47 1 2.5620 1.7549 -9.6617 48 1 3.3122 0.6813 -7.5838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536934939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:50 Heat of formation + Delta-G solvation = -111.968505 kcal Electronic energy + Delta-G solvation = -25673.194240 eV Core-core repulsion = 22076.845113 eV Total energy + Delta-G solvation = -3596.349128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.42427 -38.93572 -37.63815 -35.99718 -33.86743 -33.34114 -32.20651 -30.80287 -29.37273 -28.33596 -27.05520 -26.06637 -23.86887 -22.48514 -21.36888 -21.08510 -20.31235 -20.03106 -19.81457 -17.40294 -17.28585 -16.23506 -16.11891 -15.36181 -15.24214 -14.78363 -14.48510 -14.32029 -14.20665 -13.91069 -13.66720 -13.38019 -12.84723 -12.63907 -12.37894 -12.30502 -12.22916 -12.03430 -11.97038 -11.72698 -11.69516 -11.65096 -11.18978 -11.14786 -11.01601 -10.98269 -10.81838 -10.58573 -10.44309 -10.42627 -10.17560 -10.10633 -9.84132 -9.65524 -9.46915 -9.22659 -7.56257 -7.45128 -6.86936 -4.46477 2.46974 2.51646 2.95640 3.00407 3.03063 3.07953 3.42899 3.85559 4.41310 4.46431 4.50614 4.60108 4.84759 4.92961 5.03956 5.18622 5.22146 5.29295 5.36442 5.38212 5.46207 5.54898 5.61317 5.61648 5.63493 5.68623 5.72955 5.74993 5.86415 5.90422 6.01208 6.02138 6.06018 6.11607 6.16709 6.25379 6.31372 6.32049 6.36931 6.86583 6.96151 6.97695 7.18505 7.26646 7.51684 7.74259 7.95937 8.01219 8.15003 8.19220 8.54025 8.78576 8.86808 10.06889 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.029060 B = 0.002178 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.304260 B =12850.264890 C =13391.642864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.087 4.087 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.123 4.123 8 C -0.068 4.068 9 H 0.079 0.921 10 C -0.117 4.117 11 C 0.454 3.546 12 O -0.519 6.519 13 O -0.352 6.352 14 C 0.136 3.864 15 C -0.235 4.235 16 C -0.076 4.076 17 C -0.171 4.171 18 C 0.118 3.882 19 C -0.456 4.456 20 H 0.080 0.920 21 C 0.074 3.926 22 N -0.785 5.785 23 Si 0.910 3.090 24 H -0.259 1.259 25 H -0.271 1.271 26 H -0.273 1.273 27 C -0.230 4.230 28 C -0.064 4.064 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.120 0.880 46 H 0.282 0.718 47 H 0.095 0.905 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 -2.133 18.175 18.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.161 4.161 8 C -0.087 4.087 9 H 0.097 0.903 10 C -0.155 4.155 11 C 0.298 3.702 12 O -0.409 6.409 13 O -0.268 6.268 14 C 0.064 3.936 15 C -0.236 4.236 16 C -0.094 4.094 17 C -0.190 4.190 18 C 0.115 3.885 19 C -0.485 4.485 20 H 0.099 0.901 21 C -0.144 4.144 22 N -0.410 5.410 23 Si 0.734 3.266 24 H -0.183 1.183 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.250 4.250 28 C -0.083 4.083 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.138 0.862 46 H 0.093 0.907 47 H 0.113 0.887 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.440 -2.425 18.200 18.890 hybrid contribution -0.368 0.150 -0.776 0.872 sum 4.072 -2.275 17.423 18.037 Atomic orbital electron populations 1.21949 0.95209 1.02061 1.01929 1.21159 0.95478 0.99638 0.94237 0.90987 1.21570 0.95533 1.00705 0.97169 1.21560 0.95686 1.00693 0.97858 1.21492 0.99983 0.99538 0.94393 1.21744 0.94590 1.00647 0.99074 1.21012 0.96064 0.99840 0.91749 0.90265 1.21583 1.04021 1.00185 0.89704 1.23698 0.76399 0.84304 0.85766 1.90581 1.37954 1.24855 1.87539 1.86729 1.71790 1.53438 1.14879 1.21702 0.98255 0.92527 0.81103 1.18706 0.98505 1.09127 0.97311 1.20538 0.93861 0.98696 0.96331 1.21301 1.01443 0.99185 0.97088 1.17688 0.90549 0.88777 0.91486 1.19701 0.91858 1.33115 1.03797 0.90141 1.25980 0.96868 0.92706 0.98883 1.69839 1.03503 1.34710 1.32919 0.86236 0.79471 0.78690 0.82225 1.18287 1.19590 1.19880 1.20963 0.99651 1.05547 0.98801 1.20391 0.97160 0.95237 0.95470 0.92579 0.92679 0.92070 0.92081 0.91971 0.92117 0.92332 0.92265 0.92025 0.90036 0.92462 0.88007 0.87625 0.92148 0.92212 0.89358 0.86240 0.90697 0.88721 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.85 37.16 0.33 -0.88 16 2 C -0.09 -0.72 2.25 -90.62 -0.20 -0.92 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.11 -0.86 5.20 -26.73 -0.14 -1.00 16 5 C -0.12 -0.94 5.92 -26.73 -0.16 -1.09 16 6 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 7 C -0.12 -1.32 4.95 -26.73 -0.13 -1.45 16 8 C -0.07 -0.70 1.36 -90.62 -0.12 -0.83 16 9 H 0.08 0.92 7.95 -51.93 -0.41 0.51 16 10 C -0.12 -1.35 5.07 -27.88 -0.14 -1.49 16 11 C 0.45 7.18 7.67 36.01 0.28 7.46 16 12 O -0.52 -9.06 13.72 -18.75 -0.26 -9.31 16 13 O -0.35 -6.55 10.20 -39.26 -0.40 -6.95 16 14 C 0.14 2.62 5.58 36.01 0.20 2.83 16 15 C -0.24 -5.24 5.54 -104.33 -0.58 -5.82 16 16 C -0.08 -1.78 9.67 -39.66 -0.38 -2.16 16 17 C -0.17 -4.40 8.70 -38.87 -0.34 -4.74 16 18 C 0.12 3.10 5.57 -106.83 -0.60 2.50 16 19 C -0.46 -11.84 9.05 -37.74 -0.34 -12.18 16 20 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 21 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 22 N -0.79 -19.85 10.95 55.55 0.61 -19.24 16 23 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 24 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 27 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 28 C -0.06 -1.45 9.67 -39.66 -0.38 -1.83 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.48 6.32 -51.93 -0.33 0.15 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 1.07 5.96 -51.93 -0.31 0.76 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.11 1.09 6.17 -51.93 -0.32 0.77 16 42 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 43 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 44 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 45 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 46 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 47 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 48 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -27.75 380.36 -10.69 -38.44 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -8.00 Total: 5.29 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -3.34 Total: -27.07 kcal Atomic # 7 Polarization: -19.85 SS G_CDS: 0.61 Total: -19.24 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.66 Total: -16.26 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.75 -10.69 -38.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536934939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.527 kcal (2) G-P(sol) polarization free energy of solvation -27.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds