Wall clock time and date at job start Tue Mar 31 2020 11:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47368 * 2 1 4 4 C 1.53001 * 109.47596 * 120.00540 * 2 1 3 5 5 C 1.53000 * 109.46886 * 64.99349 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.46502 * 119.99658 * 90.00442 * 6 5 4 8 8 C 1.50701 * 109.47310 * 89.99973 * 7 6 5 9 9 H 1.07997 * 119.99940 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00037 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00056 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 120.00093 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46924 * 89.99863 * 12 10 8 14 14 H 1.48499 * 109.47472 * 209.99850 * 12 10 8 15 15 H 1.48501 * 109.47283 * 330.00165 * 12 10 8 16 16 C 1.39201 * 120.00280 * 269.99973 * 6 5 4 17 17 C 1.39564 * 120.82148 * 0.02562 * 16 6 5 18 18 C 1.37951 * 119.26990 * 179.97438 * 17 16 6 19 19 N 1.31882 * 120.96752 * 0.02562 * 18 17 16 20 20 C 1.32737 * 121.80882 * 359.97438 * 19 18 17 21 21 C 1.48437 * 119.68851 * 179.97438 * 20 19 18 22 22 N 1.34058 * 126.67851 * 180.02562 * 21 20 19 23 23 N 1.28977 * 107.27348 * 179.97438 * 22 21 20 24 24 N 1.28731 * 108.94292 * 359.97438 * 23 22 21 25 25 H 0.97005 * 125.34093 * 180.02562 * 24 23 22 26 26 N 1.28875 * 109.32032 * 359.76901 * 24 23 22 27 27 C 1.38998 * 120.62236 * 359.74840 * 20 19 18 28 28 H 1.08994 * 109.46948 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46227 * 299.99751 * 1 2 3 30 30 H 1.08996 * 109.47271 * 59.99107 * 1 2 3 31 31 H 1.09008 * 109.46731 * 240.00275 * 2 1 3 32 32 H 1.09000 * 109.47476 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47654 * 300.00659 * 3 2 1 34 34 H 1.09005 * 109.47243 * 60.00872 * 3 2 1 35 35 H 1.09001 * 109.46652 * 304.99694 * 4 2 1 36 36 H 1.08992 * 109.47514 * 184.99783 * 4 2 1 37 37 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 38 38 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 39 39 H 1.08998 * 109.46888 * 209.99779 * 7 6 5 40 40 H 1.08994 * 109.47490 * 329.99842 * 7 6 5 41 41 H 0.96994 * 120.00272 * 179.97438 * 11 10 8 42 42 H 1.08003 * 120.36634 * 359.95149 * 17 16 6 43 43 H 1.07998 * 119.51470 * 180.02562 * 18 17 16 44 44 H 1.07997 * 120.51498 * 180.28335 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 7 2.1232 -2.8861 2.3841 7 6 1.2828 -2.9586 3.5819 8 6 0.4286 -4.1987 3.5220 9 1 0.5039 -4.8659 2.6761 10 6 -0.4490 -4.4815 4.5472 11 7 -1.1948 -5.5635 4.4946 12 14 -0.5787 -3.3279 6.0106 13 1 -1.6152 -2.2995 5.7398 14 1 -0.9546 -4.1030 7.2202 15 1 0.7305 -2.6640 6.2352 16 6 3.3852 -3.4734 2.3828 17 6 4.2002 -3.4143 1.2514 18 6 5.4455 -4.0069 1.2854 19 7 5.8730 -4.6261 2.3686 20 6 5.1318 -4.7067 3.4668 21 6 5.6595 -5.4157 4.6594 22 7 5.0351 -5.5810 5.8341 23 7 5.8297 -6.2491 6.5995 24 7 6.9141 -6.5048 5.9547 25 1 7.6733 -6.9960 6.3061 26 7 6.8308 -6.0107 4.7674 27 6 3.8682 -4.1296 3.5122 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6769 1.9563 0.8901 35 1 1.6055 -0.2618 2.1369 36 1 3.1264 -0.6445 1.2950 37 1 0.5489 -2.2724 1.1419 38 1 2.0698 -2.6550 0.3000 39 1 1.9160 -2.9961 4.4683 40 1 0.6421 -2.0782 3.6301 41 1 -1.8119 -5.7627 5.2160 42 1 3.8596 -2.9105 0.3588 43 1 6.0796 -3.9632 0.4123 44 1 3.2685 -4.1924 4.4082 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589600706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:09 Heat of formation + Delta-G solvation = 154.401536 kcal Electronic energy + Delta-G solvation = -26184.899461 eV Core-core repulsion = 22561.146163 eV Total energy + Delta-G solvation = -3623.753297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.23834 -39.83172 -37.52282 -35.65387 -34.22889 -33.28538 -32.66132 -30.96373 -30.53363 -29.33920 -27.19124 -26.89112 -24.84612 -24.44191 -23.21760 -22.84632 -21.67492 -20.13515 -19.77900 -18.97001 -17.12012 -16.96045 -16.92462 -16.11683 -15.50225 -15.07365 -14.62797 -14.45370 -14.03742 -13.93323 -13.70975 -13.57992 -13.41086 -13.26854 -12.58676 -12.48485 -12.28770 -12.13070 -12.01733 -11.73419 -11.45779 -11.31780 -11.17028 -10.97565 -10.90814 -10.80707 -10.72661 -10.63458 -10.50005 -10.41105 -10.13623 -9.80404 -9.42779 -9.07554 -8.67065 -8.51061 -6.91296 -6.15863 -4.17062 0.99162 1.42224 2.00380 2.39358 2.66329 3.22661 3.31752 3.33379 3.62604 3.81688 4.32804 4.38660 4.39286 4.88585 4.94889 4.98900 5.12395 5.16390 5.26922 5.37970 5.52347 5.59640 5.61277 5.65475 5.71937 5.74026 5.78058 5.84184 5.88534 5.97643 6.07803 6.11066 6.19725 6.22691 6.28975 6.44562 6.49166 6.51425 6.52367 6.68860 6.77344 7.05305 7.48435 7.80952 8.04954 8.31030 8.43475 8.47951 8.89689 9.43373 10.96998 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.009144 B = 0.004989 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.325836 B = 5610.465259 C = 7990.495578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.134 4.134 5 C 0.121 3.879 6 N -0.587 5.587 7 C 0.217 3.783 8 C -0.538 4.538 9 H 0.077 0.923 10 C 0.078 3.922 11 N -0.891 5.891 12 Si 0.869 3.131 13 H -0.275 1.275 14 H -0.282 1.282 15 H -0.262 1.262 16 C 0.271 3.729 17 C -0.253 4.253 18 C 0.136 3.864 19 N -0.514 5.514 20 C 0.220 3.780 21 C 0.233 3.767 22 N -0.251 5.251 23 N -0.057 5.057 24 N -0.237 5.237 25 H 0.472 0.528 26 N -0.269 5.269 27 C -0.187 4.187 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.028 0.972 41 H 0.266 0.734 42 H 0.131 0.869 43 H 0.152 0.848 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.912 7.443 -5.277 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.173 4.173 5 C -0.003 4.003 6 N -0.290 5.290 7 C 0.096 3.904 8 C -0.577 4.577 9 H 0.095 0.905 10 C -0.126 4.126 11 N -0.529 5.529 12 Si 0.695 3.305 13 H -0.201 1.201 14 H -0.208 1.208 15 H -0.187 1.187 16 C 0.155 3.845 17 C -0.280 4.280 18 C -0.022 4.022 19 N -0.229 5.229 20 C 0.083 3.917 21 C -0.048 4.048 22 N -0.125 5.125 23 N -0.052 5.052 24 N -0.082 5.082 25 H 0.326 0.674 26 N -0.121 5.121 27 C -0.215 4.215 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.149 0.851 43 H 0.170 0.830 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 12.317 6.814 -4.525 14.786 hybrid contribution -0.653 0.613 0.617 1.087 sum 11.664 7.428 -3.909 14.370 Atomic orbital electron populations 1.21919 0.95155 1.02379 1.01442 1.21051 0.96018 0.95919 0.98231 1.21827 1.00783 0.96205 1.01477 1.22122 1.01130 0.96078 0.97964 1.21508 1.00559 0.90710 0.87486 1.46831 1.12817 1.54443 1.14946 1.19786 0.90081 0.97734 0.82816 1.21362 1.21197 1.07214 1.07894 0.90483 1.24848 0.94970 0.95019 0.97755 1.69883 1.24477 1.25274 1.33217 0.86954 0.79177 0.81294 0.83037 1.20115 1.20752 1.18676 1.17903 0.85469 0.88731 0.92439 1.21669 0.97175 1.10127 0.99011 1.22157 0.93100 0.92058 0.94915 1.67379 1.35810 1.20260 0.99404 1.17296 0.90313 0.95635 0.88413 1.23305 0.87720 0.99488 0.94272 1.76202 1.22455 1.12914 1.00947 1.78934 0.92387 1.12321 1.21556 1.47832 1.16088 1.37306 1.07013 0.67410 1.75106 1.21462 1.13875 1.01671 1.21593 0.96347 1.02927 1.00594 0.91947 0.92652 0.93110 0.91268 0.92863 0.92974 0.92812 0.91635 0.91865 0.89704 0.91366 0.94738 0.95386 0.92416 0.85125 0.83040 0.83092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.95 37.16 0.33 -1.30 16 2 C -0.09 -0.98 2.92 -90.62 -0.26 -1.24 16 3 C -0.15 -1.37 9.19 37.15 0.34 -1.02 16 4 C -0.13 -1.71 5.01 -26.73 -0.13 -1.84 16 5 C 0.12 1.84 4.94 -4.04 -0.02 1.82 16 6 N -0.59 -11.10 2.58 -172.95 -0.45 -11.55 16 7 C 0.22 4.81 4.01 -5.19 -0.02 4.79 16 8 C -0.54 -14.42 9.94 -34.44 -0.34 -14.76 16 9 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 10 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 11 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 12 Si 0.87 20.59 27.47 -169.99 -4.67 15.92 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 16 C 0.27 5.01 6.57 -83.64 -0.55 4.46 16 17 C -0.25 -3.88 9.26 -39.19 -0.36 -4.24 16 18 C 0.14 2.03 11.16 -17.64 -0.20 1.83 16 19 N -0.51 -9.07 10.29 -9.86 -0.10 -9.17 16 20 C 0.22 4.18 6.75 -82.99 -0.56 3.62 16 21 C 0.23 4.27 8.03 -156.30 -1.26 3.01 16 22 N -0.25 -4.70 12.21 32.15 0.39 -4.31 16 23 N -0.06 -0.87 13.47 60.35 0.81 -0.06 16 24 N -0.24 -2.87 7.90 60.35 0.48 -2.39 16 25 H 0.47 3.03 8.96 -340.36 -3.05 -0.02 16 26 N -0.27 -4.21 12.38 32.17 0.40 -3.81 16 27 C -0.19 -3.72 8.89 -38.92 -0.35 -4.07 16 28 H 0.06 0.72 6.57 -51.93 -0.34 0.38 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.38 6.49 -51.93 -0.34 1.04 16 38 H 0.07 0.94 6.26 -51.93 -0.32 0.61 16 39 H 0.03 0.79 5.30 -51.93 -0.28 0.52 16 40 H 0.03 0.61 7.50 -51.93 -0.39 0.22 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.13 1.67 6.27 -52.48 -0.33 1.34 16 43 H 0.15 1.70 8.06 -52.49 -0.42 1.27 16 44 H 0.15 3.30 6.08 -52.49 -0.32 2.98 16 LS Contribution 365.10 15.07 5.50 5.50 Total: -1.00 -32.44 365.10 -9.10 -41.54 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -8.76 Total: 0.99 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -3.48 Total: -6.89 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 2.31 Total: -57.07 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.44 -9.10 -41.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589600706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.943 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds