Wall clock time and date at job start Tue Mar 31 2020 11:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46760 * 2 1 4 4 C 1.53004 * 109.46844 * 119.99527 * 2 1 3 5 5 N 1.46896 * 109.47144 * 60.98829 * 4 2 1 6 6 C 1.46905 * 111.00103 * 73.35169 * 5 4 2 7 7 C 1.50700 * 109.47102 * 279.61725 * 6 5 4 8 8 H 1.08000 * 120.00288 * 2.98312 * 7 6 5 9 9 C 1.37880 * 119.99712 * 182.98471 * 7 6 5 10 10 N 1.31510 * 120.00129 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99799 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46482 * 90.00464 * 11 9 7 13 13 H 1.48499 * 109.46961 * 209.99901 * 11 9 7 14 14 H 1.48499 * 109.47197 * 330.00724 * 11 9 7 15 15 C 1.46890 * 111.00098 * 197.30775 * 5 4 2 16 16 C 1.50702 * 109.47346 * 66.04807 * 15 5 4 17 17 C 1.38306 * 120.36093 * 89.99728 * 16 15 5 18 18 N 1.31887 * 121.01526 * 179.74413 * 17 16 15 19 19 C 1.31751 * 121.85269 * 0.25658 * 18 17 16 20 20 C 1.39257 * 120.59951 * 0.02562 * 19 18 17 21 21 C 1.48464 * 120.53256 * 180.02562 * 20 19 18 22 22 N 1.34048 * 126.67788 * 179.68683 * 21 20 19 23 23 N 1.28984 * 107.26680 * 179.89342 * 22 21 20 24 24 N 1.28726 * 108.94679 * 0.37320 * 23 22 21 25 25 H 0.97005 * 125.33826 * 179.78095 * 24 23 22 26 26 N 1.28871 * 109.31524 * 359.76493 * 24 23 22 27 27 C 1.38422 * 120.35769 * 270.25024 * 16 15 5 28 28 H 1.08995 * 109.47026 * 60.00549 * 1 2 3 29 29 H 1.08997 * 109.46616 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47444 * 300.00380 * 1 2 3 31 31 H 1.08999 * 109.47444 * 239.99620 * 2 1 3 32 32 H 1.09006 * 109.46910 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46902 * 299.99526 * 3 2 1 34 34 H 1.08999 * 109.47452 * 59.99625 * 3 2 1 35 35 H 1.09002 * 109.47422 * 300.98619 * 4 2 1 36 36 H 1.08994 * 109.46793 * 180.98873 * 4 2 1 37 37 H 1.09002 * 109.46913 * 39.61139 * 6 5 4 38 38 H 1.08999 * 109.47313 * 159.61098 * 6 5 4 39 39 H 0.97002 * 120.00354 * 180.02562 * 10 9 7 40 40 H 1.09001 * 109.47299 * 306.04460 * 15 5 4 41 41 H 1.09004 * 109.47549 * 186.04593 * 15 5 4 42 42 H 1.07997 * 119.49164 * 0.02562 * 17 16 15 43 43 H 1.08002 * 119.70027 * 179.97438 * 19 18 17 44 44 H 1.07999 * 120.84552 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5699 -2.1128 1.2376 6 6 2.3015 -2.9072 0.2417 7 6 1.7212 -2.6558 -1.1262 8 1 0.9239 -1.9380 -1.2510 9 6 2.2081 -3.3421 -2.2184 10 7 3.1786 -4.2165 -2.0664 11 14 1.4883 -3.0309 -3.9139 12 1 2.2414 -1.9368 -4.5780 13 1 1.5899 -4.2677 -4.7294 14 1 0.0616 -2.6406 -3.7820 15 6 1.6760 -2.7157 2.5729 16 6 0.7236 -2.0236 3.5137 17 6 -0.5709 -2.4868 3.6637 18 7 -1.4136 -1.8940 4.4871 19 6 -1.0670 -0.8389 5.1959 20 6 0.2168 -0.3086 5.0964 21 6 0.6058 0.8802 5.8962 22 7 1.8019 1.4853 5.9012 23 7 1.7268 2.4751 6.7249 24 7 0.5452 2.5059 7.2346 25 1 0.2317 3.1530 7.8857 26 7 -0.1560 1.5424 6.7439 27 6 1.1334 -0.9142 4.2330 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6623 -0.2176 2.1392 36 1 3.1298 -0.7058 1.2583 37 1 3.3529 -2.6197 0.2487 38 1 2.2127 -3.9660 0.4850 39 1 3.5214 -4.6991 -2.8349 40 1 2.6958 -2.6048 2.9416 41 1 1.4239 -3.7745 2.5147 42 1 -0.8953 -3.3498 3.1014 43 1 -1.7854 -0.3805 5.8594 44 1 2.1373 -0.5290 4.1326 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589618426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:25 Heat of formation + Delta-G solvation = 158.654522 kcal Electronic energy + Delta-G solvation = -26488.016785 eV Core-core repulsion = 22864.447911 eV Total energy + Delta-G solvation = -3623.568874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.67344 -40.27622 -37.53457 -34.78581 -34.21055 -33.90435 -32.94043 -31.81980 -30.90633 -27.42120 -26.44710 -26.41030 -25.15349 -24.87746 -23.74589 -22.78829 -21.49093 -20.55998 -19.45191 -18.98364 -17.36322 -17.02064 -16.48218 -16.40937 -15.71311 -15.26053 -14.53533 -14.33350 -14.23637 -13.87052 -13.63040 -13.30208 -13.10966 -12.79894 -12.58590 -12.47672 -12.22327 -12.03416 -11.73000 -11.65760 -11.44662 -11.38550 -11.30101 -11.18502 -11.04854 -10.69601 -10.53977 -10.20007 -10.15302 -9.95474 -9.60715 -9.51796 -9.32616 -9.06061 -8.79173 -8.37439 -7.29492 -6.01093 -3.99848 0.49341 0.97447 1.26040 1.99391 2.20311 3.32618 3.39730 3.43501 3.44354 3.82021 3.95814 4.43576 4.48018 4.81783 4.91344 4.97046 5.06371 5.10075 5.21301 5.33687 5.43563 5.60351 5.67827 5.71600 5.88407 5.98089 6.01844 6.09132 6.12919 6.14000 6.26580 6.28013 6.38295 6.45590 6.54590 6.64986 6.69988 6.81280 7.16126 7.21109 7.29223 7.40993 7.86236 7.90764 7.94912 8.09749 8.18431 8.52535 9.07165 9.62484 11.09327 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.003417 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.955105 B = 8193.511622 C = 8749.218435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 C -0.144 4.144 4 C 0.070 3.930 5 N -0.527 5.527 6 C 0.193 3.807 7 C -0.503 4.503 8 H 0.078 0.922 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.891 3.109 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.272 1.272 15 C 0.093 3.907 16 C -0.110 4.110 17 C 0.139 3.861 18 N -0.484 5.484 19 C 0.132 3.868 20 C -0.080 4.080 21 C 0.231 3.769 22 N -0.266 5.266 23 N -0.049 5.049 24 N -0.229 5.229 25 H 0.475 0.525 26 N -0.296 5.296 27 C -0.029 4.029 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.030 0.970 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.040 0.960 35 H 0.052 0.948 36 H 0.023 0.977 37 H -0.006 1.006 38 H 0.029 0.971 39 H 0.260 0.740 40 H 0.037 0.963 41 H 0.086 0.914 42 H 0.165 0.835 43 H 0.160 0.840 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.488 10.631 17.144 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.124 4.124 3 C -0.202 4.202 4 C -0.058 4.058 5 N -0.251 5.251 6 C 0.068 3.932 7 C -0.541 4.541 8 H 0.096 0.904 9 C -0.147 4.147 10 N -0.539 5.539 11 Si 0.719 3.281 12 H -0.208 1.208 13 H -0.214 1.214 14 H -0.197 1.197 15 C -0.036 4.036 16 C -0.113 4.113 17 C -0.018 4.018 18 N -0.191 5.191 19 C -0.028 4.028 20 C -0.085 4.085 21 C -0.049 4.049 22 N -0.139 5.139 23 N -0.044 5.044 24 N -0.075 5.075 25 H 0.329 0.671 26 N -0.147 5.147 27 C -0.057 4.057 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.130 0.870 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.012 0.988 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.105 0.895 42 H 0.182 0.818 43 H 0.177 0.823 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.293 10.622 17.188 21.163 hybrid contribution 0.999 0.681 -0.519 1.316 sum -5.294 11.304 16.669 20.824 Atomic orbital electron populations 1.21635 0.95685 1.02554 0.98615 1.21426 0.96008 0.93924 1.01025 1.21836 1.00436 0.97493 1.00401 1.22083 0.96374 0.89860 0.97524 1.62189 1.58195 1.01950 1.02790 1.19825 0.91253 0.92490 0.89624 1.21408 1.19178 1.22646 0.90910 0.90383 1.24992 0.95266 0.95263 0.99136 1.69952 1.27119 1.26275 1.30583 0.86604 0.79714 0.77528 0.84284 1.20814 1.21408 1.19674 1.21011 0.94783 0.98434 0.89386 1.20971 0.96944 0.96016 0.97335 1.22934 0.88717 0.97878 0.92295 1.67820 1.35993 1.08582 1.06691 1.22758 0.92723 0.91545 0.95808 1.18207 0.96702 0.93771 0.99855 1.23511 0.87150 0.97828 0.96426 1.76134 1.20481 1.03050 1.14206 1.78927 1.03602 1.15376 1.06538 1.47720 1.06913 1.21739 1.31100 0.67092 1.74909 1.23807 1.02146 1.13853 1.21562 0.99645 0.92970 0.91530 0.94659 0.90652 0.95106 0.87008 0.93374 0.93318 0.94079 0.92932 0.95863 0.98847 0.95280 0.93037 0.94533 0.89538 0.81812 0.82324 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.40 37.16 0.31 -1.98 16 2 C -0.11 -1.96 2.40 -90.61 -0.22 -2.18 16 3 C -0.14 -2.30 9.19 37.16 0.34 -1.95 16 4 C 0.07 1.28 4.25 -3.82 -0.02 1.26 16 5 N -0.53 -10.22 3.70 -237.52 -0.88 -11.10 16 6 C 0.19 4.61 4.78 -4.97 -0.02 4.59 16 7 C -0.50 -13.05 7.23 -34.44 -0.25 -13.30 16 8 H 0.08 1.98 4.57 -52.49 -0.24 1.74 16 9 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 10 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 11 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 C 0.09 1.49 5.10 -4.98 -0.03 1.46 16 16 C -0.11 -1.57 4.95 -104.53 -0.52 -2.08 16 17 C 0.14 1.93 10.85 -17.50 -0.19 1.74 16 18 N -0.48 -6.69 10.35 -12.98 -0.13 -6.82 16 19 C 0.13 1.65 10.87 -17.21 -0.19 1.46 16 20 C -0.08 -1.03 5.89 -104.75 -0.62 -1.64 16 21 C 0.23 2.86 7.95 -156.30 -1.24 1.62 16 22 N -0.27 -3.47 12.31 32.16 0.40 -3.08 16 23 N -0.05 -0.53 13.47 60.35 0.81 0.29 16 24 N -0.23 -1.75 7.90 60.35 0.48 -1.28 16 25 H 0.47 1.20 8.96 -340.36 -3.05 -1.85 16 26 N -0.30 -3.02 12.11 32.17 0.39 -2.63 16 27 C -0.03 -0.39 7.67 -38.96 -0.30 -0.69 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.50 6.73 -51.93 -0.35 1.15 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.11 2.45 5.14 -51.93 -0.27 2.19 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.88 5.07 -51.93 -0.26 0.62 16 36 H 0.02 0.45 7.74 -51.93 -0.40 0.04 16 37 H -0.01 -0.16 7.67 -51.93 -0.40 -0.56 16 38 H 0.03 0.74 7.65 -51.93 -0.40 0.35 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.04 0.57 8.07 -51.93 -0.42 0.15 16 41 H 0.09 1.35 7.75 -51.93 -0.40 0.95 16 42 H 0.16 2.09 8.06 -52.49 -0.42 1.66 16 43 H 0.16 1.65 7.90 -52.49 -0.41 1.24 16 44 H 0.14 1.92 7.61 -52.49 -0.40 1.52 16 LS Contribution 360.91 15.07 5.44 5.44 Total: -1.00 -30.55 360.91 -9.49 -40.04 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -8.67 Total: -1.52 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -3.03 Total: -10.33 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 1.80 Total: -49.65 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.55 -9.49 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589618426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.696 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds