Wall clock time and date at job start Tue Mar 31 2020 11:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37857 * 119.51053 * 2 1 4 4 C 1.39897 * 119.18976 * 179.97438 * 3 2 1 5 5 C 1.48465 * 120.85822 * 180.02562 * 4 3 2 6 6 N 1.34045 * 126.67506 * 179.66557 * 5 4 3 7 7 N 1.28991 * 107.26646 * 179.83637 * 6 5 4 8 8 N 1.28726 * 108.94345 * 0.42900 * 7 6 5 9 9 H 0.97001 * 125.34084 * 179.70039 * 8 7 6 10 10 N 1.28869 * 109.31946 * 359.73115 * 8 7 6 11 11 C 1.39430 * 118.28426 * 0.02562 * 4 3 2 12 12 C 1.38909 * 118.95928 * 359.97438 * 11 4 3 13 13 N 1.39037 * 119.65088 * 180.02562 * 12 11 4 14 14 C 1.46498 * 119.99830 * 0.27748 * 13 12 11 15 15 C 1.52996 * 109.47059 * 179.72500 * 14 13 12 16 16 C 1.53010 * 109.47146 * 299.99645 * 15 14 13 17 17 C 1.53000 * 109.47166 * 59.99736 * 15 14 13 18 18 C 1.53003 * 109.47301 * 179.97438 * 15 14 13 19 19 C 1.50700 * 109.47008 * 179.97438 * 18 15 14 20 20 H 1.07997 * 120.00362 * 0.02562 * 19 18 15 21 21 C 1.37876 * 119.99653 * 179.97438 * 19 18 15 22 22 N 1.31520 * 120.00157 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00386 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47111 * 89.99562 * 23 21 19 25 25 H 1.48494 * 109.47201 * 210.00305 * 23 21 19 26 26 H 1.48506 * 109.46710 * 330.00066 * 23 21 19 27 27 N 1.31981 * 119.51580 * 180.26803 * 2 1 3 28 28 H 1.08999 * 109.47256 * 90.00274 * 1 2 3 29 29 H 1.09007 * 109.47059 * 210.00375 * 1 2 3 30 30 H 1.08994 * 109.47343 * 330.00100 * 1 2 3 31 31 H 1.07996 * 120.40717 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.52095 * 179.97438 * 11 4 3 33 33 H 0.97001 * 119.99726 * 179.97438 * 13 12 11 34 34 H 1.09004 * 109.46963 * 299.72296 * 14 13 12 35 35 H 1.08994 * 109.47567 * 59.72448 * 14 13 12 36 36 H 1.09003 * 109.46863 * 59.99870 * 16 15 14 37 37 H 1.09001 * 109.47172 * 179.97438 * 16 15 14 38 38 H 1.09000 * 109.46753 * 300.00454 * 16 15 14 39 39 H 1.08990 * 109.47258 * 60.00092 * 17 15 14 40 40 H 1.09001 * 109.46739 * 180.02562 * 17 15 14 41 41 H 1.08999 * 109.47407 * 299.99599 * 17 15 14 42 42 H 1.08990 * 109.47021 * 299.99845 * 18 15 14 43 43 H 1.09002 * 109.46620 * 60.00037 * 18 15 14 44 44 H 0.96996 * 120.00642 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1860 1.1997 0.0000 4 6 3.5850 1.1919 0.0005 5 6 4.3536 2.4621 0.0011 6 7 5.6879 2.5905 0.0080 7 7 5.9510 3.8533 0.0023 8 7 4.8444 4.5107 0.0015 9 1 4.7661 5.4776 0.0018 10 7 3.8567 3.6830 0.0008 11 6 4.2388 -0.0396 0.0005 12 6 3.4806 -1.2036 0.0005 13 7 4.1177 -2.4394 0.0010 14 6 5.5810 -2.5091 0.0077 15 6 6.0218 -3.9742 0.0138 16 6 5.4725 -4.6669 1.2627 17 6 5.4836 -4.6739 -1.2359 18 6 7.5501 -4.0470 0.0201 19 6 7.9841 -5.4902 0.0268 20 1 7.2441 -6.2767 0.0260 21 6 9.3262 -5.8063 0.0327 22 7 9.7051 -7.0657 0.0379 23 14 10.6063 -4.4459 0.0332 24 1 10.9403 -4.0811 1.4333 25 1 11.8310 -4.9184 -0.6609 26 1 10.0650 -3.2567 -0.6725 27 7 2.1572 -1.1485 -0.0054 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6447 2.1342 0.0004 32 1 5.3177 -0.0878 0.0005 33 1 3.5933 -3.2554 0.0014 34 1 5.9724 -2.0156 -0.8820 35 1 5.9645 -2.0107 0.8980 36 1 4.3838 -4.6150 1.2577 37 1 5.7862 -5.7108 1.2668 38 1 5.8560 -4.1683 2.1529 39 1 5.8748 -4.1805 -2.1255 40 1 5.7972 -5.7178 -1.2312 41 1 4.3948 -4.6221 -1.2408 42 1 7.9410 -3.5538 -0.8697 43 1 7.9338 -3.5485 0.9103 44 1 10.6492 -7.2882 0.0424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591858676.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:57 Heat of formation + Delta-G solvation = 148.783609 kcal Electronic energy + Delta-G solvation = -25658.407199 eV Core-core repulsion = 22034.410291 eV Total energy + Delta-G solvation = -3623.996909 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.73585 -40.37213 -37.88762 -35.03738 -34.76948 -34.13609 -32.39297 -31.77592 -30.85135 -27.88559 -27.24761 -26.52177 -26.11656 -25.24505 -24.65285 -22.77210 -21.66107 -21.23146 -19.54479 -18.23229 -17.41769 -17.25213 -16.85979 -16.58391 -15.66409 -14.97182 -14.90137 -14.38398 -14.29320 -14.14699 -13.93056 -13.49228 -13.25952 -13.02930 -12.74585 -12.61529 -12.42465 -12.33804 -12.24895 -11.92662 -11.75549 -11.52095 -11.35983 -11.23142 -11.10935 -10.98255 -10.60869 -10.48887 -10.06204 -9.81184 -9.73335 -9.54970 -9.52931 -9.35658 -8.98943 -8.52590 -7.59429 -6.03056 -4.00468 0.48134 0.96352 1.30412 1.93296 2.24854 3.20570 3.32459 3.40362 3.41126 3.43976 3.84928 3.90857 4.46481 4.50148 4.84310 5.00170 5.03845 5.18492 5.20374 5.29169 5.33706 5.45158 5.47775 5.49106 5.53442 5.66138 5.80688 5.94176 6.02225 6.06957 6.10181 6.16528 6.19675 6.34571 6.46127 6.58799 6.62366 6.89132 7.03786 7.06086 7.13289 7.19834 7.36539 7.70879 7.80323 7.86546 8.21126 8.54136 9.01374 9.59399 11.09731 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.003295 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.843262 B = 8494.714313 C =10439.873741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.179 3.821 3 C -0.210 4.210 4 C 0.069 3.931 5 C 0.220 3.780 6 N -0.257 5.257 7 N -0.048 5.048 8 N -0.229 5.229 9 H 0.475 0.525 10 N -0.287 5.287 11 C -0.205 4.205 12 C 0.417 3.583 13 N -0.709 5.709 14 C 0.128 3.872 15 C -0.060 4.060 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.002 4.002 19 C -0.511 4.511 20 H 0.078 0.922 21 C 0.067 3.933 22 N -0.904 5.904 23 Si 0.874 3.126 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.265 1.265 27 N -0.538 5.538 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.407 0.593 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.033 0.967 42 H 0.019 0.981 43 H 0.014 0.986 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.525 21.899 -0.118 27.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.040 3.960 3 C -0.235 4.235 4 C 0.059 3.941 5 C -0.060 4.060 6 N -0.130 5.130 7 N -0.043 5.043 8 N -0.074 5.074 9 H 0.330 0.670 10 N -0.139 5.139 11 C -0.233 4.233 12 C 0.180 3.820 13 N -0.340 5.340 14 C 0.004 3.996 15 C -0.060 4.060 16 C -0.187 4.187 17 C -0.186 4.186 18 C -0.040 4.040 19 C -0.549 4.549 20 H 0.096 0.904 21 C -0.134 4.134 22 N -0.543 5.543 23 Si 0.702 3.298 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.189 1.189 27 N -0.258 5.258 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.154 0.846 32 H 0.163 0.837 33 H 0.245 0.755 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.037 0.963 43 H 0.032 0.968 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.023 21.352 -0.125 26.696 hybrid contribution 0.844 1.566 0.017 1.780 sum -15.178 22.919 -0.108 27.489 Atomic orbital electron populations 1.20711 0.88660 1.03445 1.03128 1.20745 0.96398 0.86853 0.92011 1.21479 0.92396 0.99616 1.10003 1.17151 0.91685 0.86739 0.98566 1.23596 0.88509 0.92027 1.01895 1.76182 1.13102 1.06889 1.16853 1.78977 1.11415 0.99310 1.14632 1.47764 1.01100 1.12537 1.46042 0.67024 1.74918 1.17036 1.00407 1.21526 1.21393 1.01733 0.90213 1.09936 1.18175 0.87645 0.86563 0.89662 1.44858 1.06800 1.04191 1.78134 1.21783 0.77423 0.99232 1.01117 1.20654 0.98714 0.90710 0.95953 1.21778 0.97765 1.02471 0.96646 1.21770 0.97797 1.02439 0.96631 1.19598 0.89314 0.98532 0.96514 1.21076 0.92671 0.90728 1.50391 0.90380 1.25000 0.98573 0.95117 0.94738 1.69901 1.16204 1.16875 1.51339 0.86865 0.81357 0.83072 0.78521 1.20368 1.21529 1.18928 1.66957 1.07868 1.30034 1.20906 0.90316 0.90360 0.90651 0.84571 0.83722 0.75520 0.91930 0.91944 0.94781 0.90896 0.93433 0.93427 0.90900 0.94776 0.96323 0.96779 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.16 36.00 0.37 -0.43 16 2 C 0.18 2.06 6.77 -82.67 -0.56 1.50 16 3 C -0.21 -2.33 9.41 -39.10 -0.37 -2.70 16 4 C 0.07 0.88 5.91 -104.62 -0.62 0.27 16 5 C 0.22 2.72 7.97 -156.30 -1.25 1.47 16 6 N -0.26 -3.43 12.32 32.16 0.40 -3.04 16 7 N -0.05 -0.52 13.47 60.35 0.81 0.29 16 8 N -0.23 -1.72 7.90 60.35 0.48 -1.24 16 9 H 0.48 1.09 8.96 -340.37 -3.05 -1.97 16 10 N -0.29 -2.86 12.17 32.17 0.39 -2.47 16 11 C -0.20 -2.84 9.01 -38.89 -0.35 -3.19 16 12 C 0.42 5.98 7.65 -155.02 -1.19 4.79 16 13 N -0.71 -10.16 5.13 -60.46 -0.31 -10.47 16 14 C 0.13 1.99 3.78 -4.04 -0.02 1.97 16 15 C -0.06 -1.08 0.54 -154.50 -0.08 -1.16 16 16 C -0.13 -2.27 8.05 37.16 0.30 -1.97 16 17 C -0.13 -2.26 8.05 37.16 0.30 -1.97 16 18 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 19 C -0.51 -13.60 8.20 -34.44 -0.28 -13.88 16 20 H 0.08 2.21 5.92 -52.49 -0.31 1.90 16 21 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 22 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 23 Si 0.87 21.37 27.47 -169.99 -4.67 16.70 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 27 N -0.54 -7.44 10.29 -8.74 -0.09 -7.53 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 31 H 0.14 1.23 7.97 -52.49 -0.42 0.82 16 32 H 0.15 2.03 6.61 -52.49 -0.35 1.69 16 33 H 0.41 5.73 6.29 -40.82 -0.26 5.47 16 34 H 0.06 0.97 7.93 -51.93 -0.41 0.56 16 35 H 0.06 0.96 7.92 -51.93 -0.41 0.55 16 36 H 0.03 0.51 6.86 -51.93 -0.36 0.15 16 37 H 0.07 1.44 6.62 -51.93 -0.34 1.09 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 1.44 6.62 -51.93 -0.34 1.09 16 41 H 0.03 0.51 6.86 -51.93 -0.36 0.16 16 42 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 43 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -32.16 359.82 -9.38 -41.54 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.65 Total: 0.90 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -3.93 Total: -13.63 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 2.45 Total: -50.93 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.16 -9.38 -41.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591858676.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.321 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds