Wall clock time and date at job start Tue Mar 31 2020 11:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38166 * 119.44056 * 2 1 4 4 C 1.38603 * 119.45013 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.80341 * 180.02562 * 4 3 2 6 6 C 1.39464 * 118.39248 * 359.97438 * 4 3 2 7 7 C 1.48364 * 120.56606 * 180.02562 * 6 4 3 8 8 N 1.34076 * 126.68180 * 180.02562 * 7 6 4 9 9 N 1.28984 * 107.26518 * 179.97438 * 8 7 6 10 10 N 1.28724 * 108.95598 * 0.02562 * 9 8 7 11 11 H 0.97001 * 125.34046 * 180.02562 * 10 9 8 12 12 N 1.28875 * 109.32311 * 359.74844 * 10 9 8 13 13 C 1.40143 * 118.87079 * 0.02562 * 6 4 3 14 14 N 1.38790 * 119.78772 * 179.97438 * 13 6 4 15 15 C 1.46507 * 120.00001 * 179.97438 * 14 13 6 16 16 C 1.53000 * 109.47017 * 180.02562 * 15 14 13 17 17 C 1.52995 * 109.47288 * 299.99713 * 16 15 14 18 18 C 1.53001 * 109.47334 * 60.00215 * 16 15 14 19 19 C 1.50702 * 109.46851 * 179.97438 * 16 15 14 20 20 H 1.07996 * 120.00070 * 1.34701 * 19 16 15 21 21 C 1.37876 * 120.00198 * 181.34619 * 19 16 15 22 22 N 1.31510 * 120.00615 * 193.97742 * 21 19 16 23 23 Si 1.86800 * 119.99797 * 13.97727 * 21 19 16 24 24 H 1.48502 * 109.47479 * 84.54882 * 23 21 19 25 25 H 1.48498 * 109.47551 * 204.54766 * 23 21 19 26 26 H 1.48507 * 109.47083 * 324.55091 * 23 21 19 27 27 N 1.31953 * 119.44271 * 180.27109 * 2 1 3 28 28 H 1.08994 * 109.47203 * 90.00341 * 1 2 3 29 29 H 1.09002 * 109.46918 * 209.99906 * 1 2 3 30 30 H 1.08998 * 109.47112 * 330.00243 * 1 2 3 31 31 H 1.08005 * 120.27597 * 0.04061 * 3 2 1 32 32 H 1.09000 * 109.47300 * 269.97429 * 5 4 3 33 33 H 1.08994 * 109.47137 * 29.97875 * 5 4 3 34 34 H 1.09003 * 109.46752 * 149.97585 * 5 4 3 35 35 H 0.96998 * 120.00471 * 0.02562 * 14 13 6 36 36 H 1.08994 * 109.47081 * 60.00012 * 15 14 13 37 37 H 1.08999 * 109.47057 * 299.99837 * 15 14 13 38 38 H 1.08999 * 109.47327 * 189.36918 * 17 16 15 39 39 H 1.09002 * 109.47265 * 309.37566 * 17 16 15 40 40 H 1.09007 * 109.46965 * 69.37487 * 17 16 15 41 41 H 1.09000 * 109.47059 * 299.99788 * 18 16 15 42 42 H 1.09007 * 109.46832 * 59.99701 * 18 16 15 43 43 H 1.09000 * 109.47104 * 179.97438 * 18 16 15 44 44 H 0.96999 * 120.00583 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1861 1.2032 0.0000 4 6 3.5722 1.2035 -0.0005 5 6 4.3436 2.4980 0.0000 6 6 4.2355 -0.0233 -0.0005 7 6 5.7181 -0.0793 -0.0005 8 7 6.4779 -1.1840 -0.0010 9 7 7.7097 -0.8015 -0.0013 10 7 7.7479 0.4852 -0.0006 11 1 8.5555 1.0225 -0.0010 12 7 6.5450 0.9476 -0.0051 13 6 3.4779 -1.2023 -0.0005 14 7 4.1184 -2.4335 -0.0010 15 6 3.3309 -3.6689 -0.0004 16 6 4.2732 -4.8743 -0.0005 17 6 5.1550 -4.8323 -1.2501 18 6 5.1560 -4.8318 1.2484 19 6 3.4631 -6.1451 0.0007 20 1 2.3844 -6.0979 -0.0205 21 6 4.0991 -7.3681 0.0289 22 7 3.4274 -8.4651 -0.2447 23 14 5.9150 -7.4668 0.4557 24 1 6.0757 -7.4985 1.9316 25 1 6.4953 -8.7010 -0.1319 26 1 6.6178 -6.2794 -0.0934 27 7 2.1556 -1.1491 -0.0054 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6415 2.1359 0.0007 32 1 4.5297 2.8106 -1.0275 33 1 3.7652 3.2654 0.5142 34 1 5.2942 2.3541 0.5138 35 1 5.0874 -2.4761 -0.0010 36 1 2.7017 -3.6991 -0.8899 37 1 2.7030 -3.6991 0.8900 38 1 5.7059 -5.7687 -1.3377 39 1 4.5292 -4.6950 -2.1320 40 1 5.8581 -4.0031 -1.1709 41 1 5.7419 -3.9126 1.2479 42 1 4.5277 -4.8617 2.1386 43 1 5.8270 -5.6908 1.2485 44 1 3.8749 -9.3255 -0.2252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591943429.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:58 Heat of formation + Delta-G solvation = 180.406036 kcal Electronic energy + Delta-G solvation = -27048.824755 eV Core-core repulsion = 23426.199098 eV Total energy + Delta-G solvation = -3622.625658 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.48361 -40.28183 -37.30759 -35.06780 -34.68523 -34.02843 -32.36160 -31.79149 -30.39070 -28.39129 -27.29841 -26.23458 -25.60269 -24.74583 -24.47632 -23.42248 -21.74891 -20.69378 -19.47780 -18.73361 -17.18835 -16.94747 -16.45058 -16.16517 -15.90362 -14.97743 -14.82490 -14.42849 -14.03902 -13.67291 -13.51640 -13.32093 -13.17744 -12.82802 -12.62492 -12.54723 -12.44437 -12.22392 -12.09277 -11.98483 -11.88360 -11.69349 -11.46990 -11.29718 -11.02112 -10.82714 -10.30605 -10.13743 -10.09704 -9.97216 -9.55699 -9.29449 -9.05094 -8.98207 -8.55941 -8.37031 -7.27371 -6.06421 -4.02606 0.74285 1.15124 1.63889 2.18117 2.36691 3.33924 3.43509 3.46663 3.50034 3.88457 4.00594 4.14796 4.45451 4.55979 4.70642 5.05863 5.25446 5.27074 5.32341 5.42529 5.43455 5.54427 5.59624 5.65587 5.77620 5.89416 5.93084 6.05881 6.10509 6.19713 6.25524 6.33872 6.43492 6.54786 6.61135 6.71679 6.73650 6.78750 6.85308 7.02889 7.33550 7.54516 7.59617 7.83597 7.87384 8.11730 8.51613 8.65459 8.98800 9.58801 11.06558 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013663 B = 0.004723 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.802480 B = 5927.355149 C = 7754.858986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.209 3.791 3 C -0.261 4.261 4 C 0.047 3.953 5 C -0.126 4.126 6 C -0.179 4.179 7 C 0.252 3.748 8 N -0.289 5.289 9 N -0.040 5.040 10 N -0.233 5.233 11 H 0.473 0.527 12 N -0.307 5.307 13 C 0.455 3.545 14 N -0.694 5.694 15 C 0.147 3.853 16 C 0.028 3.972 17 C -0.142 4.142 18 C -0.148 4.148 19 C -0.509 4.509 20 H 0.077 0.923 21 C 0.076 3.924 22 N -0.893 5.893 23 Si 0.882 3.118 24 H -0.286 1.286 25 H -0.306 1.306 26 H -0.247 1.247 27 N -0.542 5.542 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.132 0.868 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.422 0.578 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.026 0.974 41 H 0.033 0.967 42 H 0.050 0.950 43 H 0.040 0.960 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.676 24.220 0.508 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.067 3.933 3 C -0.285 4.285 4 C 0.037 3.963 5 C -0.182 4.182 6 C -0.191 4.191 7 C -0.026 4.026 8 N -0.162 5.162 9 N -0.035 5.035 10 N -0.079 5.079 11 H 0.326 0.674 12 N -0.159 5.159 13 C 0.212 3.788 14 N -0.328 5.328 15 C 0.024 3.976 16 C 0.027 3.973 17 C -0.200 4.200 18 C -0.205 4.205 19 C -0.547 4.547 20 H 0.095 0.905 21 C -0.126 4.126 22 N -0.530 5.530 23 Si 0.714 3.286 24 H -0.214 1.214 25 H -0.235 1.235 26 H -0.173 1.173 27 N -0.262 5.262 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.150 0.850 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.268 0.732 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.793 22.642 0.474 22.962 hybrid contribution 1.953 0.997 0.290 2.212 sum 5.746 23.639 0.764 24.340 Atomic orbital electron populations 1.20778 0.88870 1.03548 1.03253 1.21128 0.96581 0.87518 0.88066 1.21294 0.93114 0.98975 1.15092 1.19958 0.93607 0.93528 0.89166 1.21119 1.00950 0.93063 1.03106 1.17328 0.84822 0.93854 1.23139 1.23440 0.95702 0.84195 0.99283 1.75530 0.95434 1.25369 1.19861 1.78886 1.15620 0.94999 1.13997 1.47772 1.08371 1.05342 1.46394 0.67354 1.75003 0.90397 1.25867 1.24603 1.18344 0.87983 0.85635 0.86825 1.45944 1.10974 1.02474 1.73383 1.21539 0.93697 0.80973 1.01403 1.18722 0.92984 0.94059 0.91535 1.22281 0.98749 0.99878 0.99076 1.22346 0.99299 0.98723 1.00099 1.20716 0.94487 0.87735 1.51715 0.90525 1.24937 0.97814 0.95622 0.94236 1.69950 1.37156 0.98450 1.47483 0.87349 0.86874 0.76064 0.78280 1.21422 1.23509 1.17263 1.67280 1.06594 1.29154 1.23168 0.90090 0.90096 0.90661 0.85016 0.90515 0.91282 0.88846 0.73160 0.91878 0.92004 0.92663 0.93663 0.95489 0.94777 0.93038 0.94158 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.16 36.01 0.37 -0.70 16 2 C 0.21 2.83 6.78 -82.57 -0.56 2.27 16 3 C -0.26 -3.08 9.42 -39.47 -0.37 -3.45 16 4 C 0.05 0.60 5.94 -104.03 -0.62 -0.02 16 5 C -0.13 -1.19 9.28 36.00 0.33 -0.85 16 6 C -0.18 -2.78 5.91 -104.56 -0.62 -3.40 16 7 C 0.25 3.77 7.78 -156.29 -1.22 2.55 16 8 N -0.29 -4.67 9.49 32.14 0.30 -4.37 16 9 N -0.04 -0.53 13.47 60.35 0.81 0.28 16 10 N -0.23 -2.20 7.90 60.35 0.48 -1.73 16 11 H 0.47 1.95 8.96 -340.36 -3.05 -1.10 16 12 N -0.31 -3.57 9.10 32.16 0.29 -3.28 16 13 C 0.46 8.10 7.49 -154.91 -1.16 6.94 16 14 N -0.69 -13.41 5.08 -60.21 -0.31 -13.71 16 15 C 0.15 3.14 4.51 -4.04 -0.02 3.12 16 16 C 0.03 0.67 0.50 -155.66 -0.08 0.59 16 17 C -0.14 -3.24 7.53 37.15 0.28 -2.96 16 18 C -0.15 -3.34 7.52 37.16 0.28 -3.06 16 19 C -0.51 -14.13 8.62 -34.44 -0.30 -14.43 16 20 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 21 C 0.08 2.19 5.32 -17.82 -0.09 2.09 16 22 N -0.89 -27.30 13.96 55.43 0.77 -26.53 16 23 Si 0.88 22.18 22.79 -169.99 -3.87 18.31 16 24 H -0.29 -7.17 7.10 56.52 0.40 -6.77 16 25 H -0.31 -7.80 7.11 56.52 0.40 -7.40 16 26 H -0.25 -5.82 4.65 56.52 0.26 -5.56 16 27 N -0.54 -9.28 9.46 -8.45 -0.08 -9.36 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 31 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.52 8.10 -51.93 -0.42 0.09 16 34 H 0.09 0.93 5.33 -51.93 -0.28 0.65 16 35 H 0.42 8.11 2.81 -40.82 -0.11 8.00 16 36 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.05 1.31 4.30 -51.93 -0.22 1.08 16 39 H 0.04 1.00 8.12 -51.93 -0.42 0.58 16 40 H 0.03 0.56 7.13 -51.93 -0.37 0.19 16 41 H 0.03 0.70 6.86 -51.93 -0.36 0.35 16 42 H 0.05 1.14 8.14 -51.92 -0.42 0.72 16 43 H 0.04 0.95 2.25 -51.93 -0.12 0.83 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -33.37 342.03 -8.64 -42.01 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -8.42 Total: 4.53 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -3.77 Total: -11.31 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 2.27 Total: -58.70 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -3.87 Total: 18.31 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.37 -8.64 -42.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591943429.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.415 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds