Wall clock time and date at job start Tue Mar 31 2020 11:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38675 * 120.37912 * 2 1 4 4 C 1.38394 * 118.59310 * 180.30253 * 3 2 1 5 5 C 1.39215 * 119.29381 * 359.45472 * 4 3 2 6 6 N 1.38990 * 119.64125 * 180.30358 * 5 4 3 7 7 C 1.46500 * 120.00450 * 0.24867 * 6 5 4 8 8 C 1.53000 * 109.47519 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47302 * 300.00749 * 8 7 6 10 10 C 1.53006 * 109.46760 * 60.00273 * 8 7 6 11 11 C 1.52994 * 109.47530 * 180.02562 * 8 7 6 12 12 C 1.50702 * 109.47472 * 180.02562 * 11 8 7 13 13 H 1.08006 * 119.99626 * 0.02562 * 12 11 8 14 14 C 1.37872 * 120.00050 * 180.02562 * 12 11 8 15 15 N 1.31512 * 120.00011 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99905 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47050 * 89.99871 * 16 14 12 18 18 H 1.48490 * 109.47365 * 209.99976 * 16 14 12 19 19 H 1.48503 * 109.47105 * 330.00268 * 16 14 12 20 20 N 1.32269 * 120.71169 * 0.55387 * 5 4 3 21 21 C 1.32756 * 121.51701 * 359.72549 * 20 5 4 22 22 C 1.48419 * 119.67741 * 179.97438 * 21 20 5 23 23 N 1.34060 * 126.67896 * 180.02562 * 22 21 20 24 24 N 1.28978 * 107.27153 * 179.97438 * 23 22 21 25 25 N 1.28728 * 108.94970 * 0.02562 * 24 23 22 26 26 H 0.96999 * 125.34428 * 180.02562 * 25 24 23 27 27 N 1.28875 * 109.32000 * 359.74492 * 25 24 23 28 28 H 1.08998 * 109.47053 * 90.00092 * 1 2 3 29 29 H 1.08999 * 109.46892 * 210.00034 * 1 2 3 30 30 H 1.09003 * 109.46823 * 329.99906 * 1 2 3 31 31 H 1.08002 * 120.69958 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.34956 * 179.70383 * 4 3 2 33 33 H 0.97003 * 120.00146 * 180.25539 * 6 5 4 34 34 H 1.09001 * 109.47590 * 300.00606 * 7 6 5 35 35 H 1.09000 * 109.47099 * 60.00287 * 7 6 5 36 36 H 1.08997 * 109.47602 * 59.99490 * 9 8 7 37 37 H 1.08996 * 109.47465 * 179.97438 * 9 8 7 38 38 H 1.09008 * 109.46881 * 299.99366 * 9 8 7 39 39 H 1.08994 * 109.47355 * 59.99898 * 10 8 7 40 40 H 1.09002 * 109.46958 * 180.02562 * 10 8 7 41 41 H 1.09006 * 109.46901 * 300.00068 * 10 8 7 42 42 H 1.09000 * 109.46993 * 300.00668 * 11 8 7 43 43 H 1.09000 * 109.47211 * 60.00100 * 11 8 7 44 44 H 0.97008 * 119.99918 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1963 0.0000 4 6 3.5916 1.1532 -0.0064 5 6 4.2346 -0.0815 -0.0011 6 7 5.6235 -0.1332 -0.0011 7 6 6.4028 1.1073 -0.0011 8 6 7.8956 0.7720 -0.0017 9 6 8.2356 -0.0439 1.2471 10 6 8.2346 -0.0433 -1.2514 11 6 8.7094 2.0675 -0.0012 12 6 10.1798 1.7372 -0.0024 13 1 10.5016 0.7062 -0.0039 14 6 11.1141 2.7511 -0.0016 15 7 10.7222 4.0064 0.0007 16 14 12.9367 2.3416 -0.0039 17 1 13.4184 2.2353 -1.4046 18 1 13.6861 3.4148 0.6971 19 1 13.1545 1.0489 0.6939 20 7 3.5380 -1.2059 -0.0010 21 6 2.2105 -1.1999 -0.0005 22 6 1.4698 -2.4860 -0.0010 23 7 0.1384 -2.6434 -0.0012 24 7 -0.0973 -3.9114 -0.0022 25 7 1.0233 -4.5449 -0.0022 26 1 1.1224 -5.5098 -0.0032 27 7 1.9930 -3.6961 -0.0066 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6860 2.1417 0.0004 32 1 4.1660 2.0678 -0.0114 33 1 6.0770 -0.9907 -0.0011 34 1 6.1610 1.6884 -0.8911 35 1 6.1610 1.6883 0.8888 36 1 7.6559 -0.9669 1.2471 37 1 9.2990 -0.2832 1.2465 38 1 7.9941 0.5369 2.1374 39 1 7.9924 0.5379 -2.1411 40 1 9.2980 -0.2826 -1.2516 41 1 7.6548 -0.9663 -1.2513 42 1 8.4673 2.6491 -0.8907 43 1 8.4679 2.6480 0.8892 44 1 11.3796 4.7198 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592183161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:20 Heat of formation + Delta-G solvation = 154.242360 kcal Electronic energy + Delta-G solvation = -25561.908909 eV Core-core repulsion = 21938.148709 eV Total energy + Delta-G solvation = -3623.760200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.65826 -40.33998 -37.83881 -35.30016 -34.33303 -33.63057 -32.85592 -32.03765 -30.70674 -27.52694 -26.92987 -26.51106 -25.51030 -25.15336 -24.36384 -22.90658 -22.35082 -21.22124 -19.34107 -18.37631 -17.36024 -17.35110 -16.84627 -16.27278 -15.26635 -14.87497 -14.84519 -14.55739 -14.34012 -14.10766 -13.99328 -13.31121 -12.98190 -12.95117 -12.83540 -12.75170 -12.31318 -12.11682 -12.07767 -11.78575 -11.58339 -11.37502 -11.08554 -11.02043 -10.89031 -10.85932 -10.65926 -10.44980 -10.27609 -10.00056 -9.79453 -9.51369 -9.41665 -9.25590 -8.97338 -8.39475 -7.45572 -6.04037 -4.04843 0.57339 1.00005 1.46065 2.02066 2.21005 3.05525 3.28935 3.36138 3.38256 3.59149 3.91679 4.02523 4.42671 4.78332 4.90978 4.96312 5.07829 5.23516 5.26293 5.31958 5.40838 5.53371 5.55757 5.69290 5.73576 5.76335 6.01074 6.07873 6.13745 6.14522 6.20233 6.25962 6.29616 6.36194 6.57524 6.62508 6.64504 7.00394 7.04888 7.06305 7.18343 7.57685 7.70169 7.73129 7.94580 7.94812 8.20076 8.37176 8.99613 9.58604 11.07440 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.002419 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.997236 B =11572.694752 C =12376.030769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.159 4.159 3 C -0.036 4.036 4 C -0.214 4.214 5 C 0.409 3.591 6 N -0.712 5.712 7 C 0.133 3.867 8 C -0.069 4.069 9 C -0.128 4.128 10 C -0.128 4.128 11 C 0.036 3.964 12 C -0.511 4.511 13 H 0.059 0.941 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 N -0.520 5.520 21 C 0.236 3.764 22 C 0.229 3.771 23 N -0.258 5.258 24 N -0.058 5.058 25 N -0.229 5.229 26 H 0.475 0.525 27 N -0.262 5.262 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.405 0.595 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.031 0.969 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.031 0.969 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.353 -11.710 0.059 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.167 4.167 3 C -0.062 4.062 4 C -0.240 4.240 5 C 0.170 3.830 6 N -0.344 5.344 7 C 0.010 3.990 8 C -0.070 4.070 9 C -0.185 4.185 10 C -0.185 4.185 11 C -0.001 4.001 12 C -0.549 4.549 13 H 0.077 0.923 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 N -0.239 5.239 21 C 0.096 3.904 22 C -0.051 4.051 23 N -0.132 5.132 24 N -0.053 5.053 25 N -0.076 5.076 26 H 0.329 0.671 27 N -0.114 5.114 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.242 0.758 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.050 0.950 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.230 -12.518 0.061 23.790 hybrid contribution 1.428 0.012 -0.042 1.429 sum -18.802 -12.506 0.018 22.581 Atomic orbital electron populations 1.20959 0.89644 1.03829 1.02672 1.20372 0.97688 0.91962 1.06711 1.21167 0.93119 0.97638 0.94245 1.21677 0.95258 0.97962 1.09145 1.18204 0.85944 0.88224 0.90607 1.44885 1.00691 1.10286 1.78499 1.21733 0.91766 0.84618 1.00909 1.20868 0.91169 0.99669 0.95288 1.21759 1.01977 0.97676 0.97088 1.21761 1.01969 0.97685 0.97086 1.19098 0.93969 0.89639 0.97404 1.21175 0.90874 0.92618 1.50216 0.92254 1.24999 0.98844 0.95109 0.95513 1.69954 1.33875 0.98703 1.50938 0.86648 0.85609 0.78012 0.78056 1.20759 1.21327 1.19937 1.66798 1.06690 1.30038 1.20369 1.17129 0.87677 0.86347 0.99250 1.23270 0.87821 0.91644 1.02407 1.76134 1.13288 1.05826 1.17945 1.78921 1.11192 1.00201 1.14968 1.47838 1.01262 1.12573 1.45888 0.67080 1.75207 1.16787 0.99727 1.19665 0.91499 0.88709 0.92021 0.84295 0.84232 0.75787 0.92064 0.92055 0.95010 0.91461 0.93403 0.93403 0.91468 0.95003 0.96346 0.96325 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.19 36.01 0.33 -0.77 16 2 C -0.16 -1.90 5.92 -104.14 -0.62 -2.52 16 3 C -0.04 -0.40 9.84 -39.36 -0.39 -0.79 16 4 C -0.21 -2.73 9.32 -39.16 -0.37 -3.10 16 5 C 0.41 6.00 7.65 -155.11 -1.19 4.82 16 6 N -0.71 -10.48 5.13 -60.43 -0.31 -10.79 16 7 C 0.13 2.09 3.78 -4.04 -0.02 2.07 16 8 C -0.07 -1.27 0.54 -154.51 -0.08 -1.35 16 9 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 10 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 11 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 12 C -0.51 -13.26 7.65 -34.44 -0.26 -13.52 16 13 H 0.06 1.50 5.68 -52.48 -0.30 1.20 16 14 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -25.79 13.29 55.43 0.74 -25.05 16 16 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 20 N -0.52 -7.96 10.32 -8.97 -0.09 -8.06 16 21 C 0.24 3.29 6.75 -82.96 -0.56 2.73 16 22 C 0.23 2.99 7.89 -156.29 -1.23 1.76 16 23 N -0.26 -3.05 9.04 32.15 0.29 -2.76 16 24 N -0.06 -0.58 13.47 60.35 0.81 0.23 16 25 N -0.23 -1.86 7.90 60.35 0.48 -1.38 16 26 H 0.48 1.48 8.96 -340.37 -3.05 -1.58 16 27 N -0.26 -3.13 12.38 32.17 0.40 -2.73 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 1.00 5.14 -51.93 -0.27 0.73 16 30 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.14 1.64 6.69 -52.49 -0.35 1.29 16 33 H 0.40 5.99 6.29 -40.82 -0.26 5.74 16 34 H 0.06 0.95 7.91 -51.93 -0.41 0.54 16 35 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 36 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 37 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 38 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 41 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -31.00 357.24 -9.85 -40.86 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -8.54 Total: 0.74 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -3.99 Total: -12.36 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 2.31 Total: -50.54 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.00 -9.85 -40.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592183161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.098 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds