Wall clock time and date at job start Tue Mar 31 2020 11:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38644 * 120.80368 * 2 1 4 4 C 1.38127 * 119.45155 * 180.02562 * 3 2 1 5 5 N 1.31981 * 121.11951 * 359.97438 * 4 3 2 6 6 C 1.32304 * 121.74199 * 359.97438 * 5 4 3 7 7 N 1.38789 * 119.78474 * 180.02562 * 6 5 4 8 8 C 1.46498 * 119.99933 * 359.97438 * 7 6 5 9 9 C 1.53007 * 109.47222 * 180.02562 * 8 7 6 10 10 C 1.52994 * 109.46942 * 300.00280 * 9 8 7 11 11 C 1.52997 * 109.46656 * 60.00233 * 9 8 7 12 12 C 1.53001 * 109.47020 * 180.02562 * 9 8 7 13 13 C 1.50703 * 109.46802 * 179.97438 * 12 9 8 14 14 H 1.08001 * 119.99985 * 0.02562 * 13 12 9 15 15 C 1.37875 * 119.99887 * 180.02562 * 13 12 9 16 16 N 1.31510 * 119.99981 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99771 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47584 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47239 * 120.00052 * 17 15 13 20 20 H 1.48501 * 109.46807 * 239.99661 * 17 15 13 21 21 C 1.39429 * 120.80659 * 180.02562 * 2 1 3 22 22 C 1.48371 * 120.55970 * 0.02562 * 21 2 1 23 23 N 1.34082 * 126.67525 * 180.02562 * 22 21 2 24 24 N 1.28982 * 107.26321 * 179.97438 * 23 22 21 25 25 N 1.28723 * 108.95319 * 359.97438 * 24 23 22 26 26 H 0.96999 * 125.33576 * 180.02562 * 25 24 23 27 27 N 1.28871 * 109.33170 * 359.76765 * 25 24 23 28 28 H 1.09004 * 109.46810 * 269.97469 * 1 2 3 29 29 H 1.08993 * 109.46775 * 29.97158 * 1 2 3 30 30 H 1.09001 * 109.47104 * 149.97898 * 1 2 3 31 31 H 1.08003 * 120.27102 * 0.02562 * 3 2 1 32 32 H 1.08008 * 119.43729 * 179.97438 * 4 3 2 33 33 H 0.96996 * 120.00312 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47819 * 300.00156 * 8 7 6 35 35 H 1.09002 * 109.46848 * 60.00488 * 8 7 6 36 36 H 1.09004 * 109.47336 * 59.99493 * 10 9 8 37 37 H 1.08999 * 109.47544 * 179.97438 * 10 9 8 38 38 H 1.09002 * 109.47434 * 299.99803 * 10 9 8 39 39 H 1.08996 * 109.47628 * 60.00204 * 11 9 8 40 40 H 1.09007 * 109.46727 * 180.02562 * 11 9 8 41 41 H 1.09000 * 109.47229 * 299.99389 * 11 9 8 42 42 H 1.08996 * 109.47229 * 299.99774 * 12 9 8 43 43 H 1.09002 * 109.46997 * 60.00417 * 12 9 8 44 44 H 0.97009 * 120.00002 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1909 0.0000 4 6 3.5979 1.1583 -0.0005 5 7 4.2531 0.0126 -0.0005 6 6 3.6220 -1.1502 0.0005 7 7 4.3518 -2.3307 0.0009 8 6 5.8161 -2.2866 -0.0002 9 6 6.3694 -3.7132 0.0000 10 6 5.8823 -4.4489 1.2499 11 6 5.8804 -4.4499 -1.2486 12 6 7.8987 -3.6671 -0.0006 13 6 8.4436 -5.0721 0.0002 14 1 7.7668 -5.9138 0.0007 15 6 9.8061 -5.2831 0.0004 16 7 10.6302 -4.2583 -0.0006 17 14 10.4814 -7.0248 0.0007 18 1 9.3551 -7.9926 0.0013 19 1 11.3132 -7.2334 -1.2116 20 1 11.3130 -7.2330 1.2134 21 6 2.2211 -1.1976 -0.0005 22 6 1.5101 -2.4998 -0.0017 23 7 2.0702 -3.7180 -0.0018 24 7 1.1109 -4.5803 -0.0024 25 7 -0.0139 -3.9545 -0.0021 26 1 -0.8889 -4.3731 -0.0021 27 7 0.2046 -2.6844 0.0036 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3632 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6946 2.1361 0.0004 32 1 4.1507 2.0861 -0.0010 33 1 3.8924 -3.1850 0.0013 34 1 6.1633 -1.7629 -0.8909 35 1 6.1645 -1.7614 0.8891 36 1 4.7927 -4.4816 1.2507 37 1 6.2760 -5.4653 1.2499 38 1 6.2306 -3.9240 2.1394 39 1 6.2274 -3.9258 -2.1391 40 1 6.2741 -5.4663 -1.2482 41 1 4.7909 -4.4828 -1.2477 42 1 8.2461 -3.1428 -0.8908 43 1 8.2467 -3.1423 0.8892 44 1 11.5888 -4.4068 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592275564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:54 Heat of formation + Delta-G solvation = 155.299047 kcal Electronic energy + Delta-G solvation = -26570.289293 eV Core-core repulsion = 22946.574915 eV Total energy + Delta-G solvation = -3623.714378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.57949 -40.30007 -37.59378 -34.92079 -34.84501 -34.02752 -32.50816 -31.96717 -29.65936 -28.13292 -26.92534 -26.34080 -25.75489 -24.78748 -24.45733 -22.81628 -22.07279 -20.90018 -19.48945 -18.17222 -17.28082 -16.99651 -16.54441 -16.27298 -16.05096 -14.78264 -14.69638 -14.59229 -14.31632 -13.86744 -13.76213 -13.30732 -13.05880 -12.89588 -12.66897 -12.62410 -12.16524 -12.11558 -11.97991 -11.83148 -11.59415 -11.25276 -11.11313 -10.94344 -10.92324 -10.74401 -10.53011 -10.27157 -10.12289 -10.00592 -9.61875 -9.44217 -9.25827 -9.06064 -8.81642 -8.28932 -7.44640 -5.93103 -3.93246 0.64668 1.06138 1.51355 2.09504 2.27826 3.35110 3.37708 3.42991 3.46635 3.74724 3.94426 4.04442 4.51422 4.58254 4.71717 4.96661 5.18162 5.22315 5.33606 5.42793 5.47871 5.49462 5.63097 5.68981 5.78096 5.85829 5.92401 5.97398 6.24894 6.30897 6.38496 6.40946 6.43936 6.57430 6.59355 6.79163 6.81174 7.20215 7.20537 7.23048 7.47129 7.68276 7.73455 7.86620 8.01447 8.06895 8.47264 8.50291 9.11854 9.69382 11.18511 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.018211 B = 0.003416 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.146086 B = 8195.791758 C = 9531.278431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.044 3.956 3 C -0.260 4.260 4 C 0.182 3.818 5 N -0.544 5.544 6 C 0.450 3.550 7 N -0.694 5.694 8 C 0.133 3.867 9 C -0.072 4.072 10 C -0.128 4.128 11 C -0.128 4.128 12 C 0.037 3.963 13 C -0.507 4.507 14 H 0.060 0.940 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.887 3.113 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.286 1.286 21 C -0.170 4.170 22 C 0.250 3.750 23 N -0.288 5.288 24 N -0.038 5.038 25 N -0.232 5.232 26 H 0.474 0.526 27 N -0.305 5.305 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.134 0.866 32 H 0.159 0.841 33 H 0.423 0.577 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.065 0.935 41 H 0.033 0.967 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.521 8.100 -0.027 25.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.034 3.966 3 C -0.284 4.284 4 C 0.021 3.979 5 N -0.262 5.262 6 C 0.207 3.793 7 N -0.329 5.329 8 C 0.010 3.990 9 C -0.072 4.072 10 C -0.185 4.185 11 C -0.185 4.185 12 C 0.000 4.000 13 C -0.546 4.546 14 H 0.078 0.922 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.715 3.285 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.212 1.212 21 C -0.183 4.183 22 C -0.029 4.029 23 N -0.162 5.162 24 N -0.033 5.033 25 N -0.078 5.078 26 H 0.327 0.673 27 N -0.157 5.157 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.152 0.848 32 H 0.176 0.824 33 H 0.270 0.730 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.052 0.948 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -23.226 7.324 -0.025 24.353 hybrid contribution -1.017 -0.963 0.024 1.401 sum -24.243 6.361 -0.001 25.064 Atomic orbital electron populations 1.21137 0.90009 1.04035 1.03188 1.20016 0.96396 0.90956 0.89203 1.21543 0.95224 0.97829 1.13782 1.22632 0.91557 0.95255 0.88432 1.67477 1.39505 0.96878 1.22350 1.18403 0.86022 0.87778 0.87098 1.45798 1.07620 1.05439 1.74033 1.21655 0.77207 0.98486 1.01680 1.20895 0.99808 0.91393 0.95139 1.21760 0.98009 1.01661 0.97094 1.21760 0.98015 1.01654 0.97099 1.19085 0.86165 0.97383 0.97390 1.21257 0.91210 0.92413 1.49675 0.92191 1.25003 0.97317 0.96524 0.95692 1.69978 1.02660 1.29600 1.51302 0.86611 0.79047 0.85345 0.77451 1.19786 1.21185 1.21191 1.17369 0.91221 0.87550 1.22125 1.23433 0.86090 0.93854 0.99536 1.75502 1.22722 0.98110 1.19852 1.78892 0.88323 1.22171 1.13890 1.47781 1.11129 1.02598 1.46256 0.67258 1.75013 1.18086 0.98224 1.24338 0.90433 0.91181 0.88824 0.84847 0.82429 0.72972 0.91834 0.91830 0.94864 0.91561 0.93598 0.93595 0.91564 0.94849 0.96361 0.96361 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 9.28 36.01 0.33 -0.74 16 2 C 0.04 0.50 5.94 -104.03 -0.62 -0.12 16 3 C -0.26 -2.65 9.80 -39.47 -0.39 -3.04 16 4 C 0.18 2.13 11.16 -17.53 -0.20 1.94 16 5 N -0.54 -8.45 9.55 -12.22 -0.12 -8.56 16 6 C 0.45 7.26 7.49 -154.92 -1.16 6.10 16 7 N -0.69 -12.03 5.04 -60.21 -0.30 -12.34 16 8 C 0.13 2.53 4.58 -4.04 -0.02 2.52 16 9 C -0.07 -1.49 0.54 -154.51 -0.08 -1.57 16 10 C -0.13 -2.54 8.05 37.15 0.30 -2.24 16 11 C -0.13 -2.54 8.05 37.16 0.30 -2.24 16 12 C 0.04 0.95 4.04 -27.88 -0.11 0.84 16 13 C -0.51 -13.94 7.65 -34.44 -0.26 -14.20 16 14 H 0.06 1.61 5.68 -52.49 -0.30 1.31 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 17 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 C -0.17 -2.41 5.91 -104.55 -0.62 -3.03 16 22 C 0.25 3.40 7.78 -156.28 -1.22 2.18 16 23 N -0.29 -4.23 9.49 32.15 0.31 -3.93 16 24 N -0.04 -0.45 13.47 60.35 0.81 0.36 16 25 N -0.23 -1.95 7.90 60.35 0.48 -1.47 16 26 H 0.47 1.51 8.96 -340.37 -3.05 -1.54 16 27 N -0.30 -3.22 9.10 32.16 0.29 -2.93 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.09 0.84 5.33 -51.93 -0.28 0.56 16 31 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.42 7.26 2.72 -40.82 -0.11 7.15 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.03 0.60 6.86 -51.93 -0.36 0.24 16 37 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 41 H 0.03 0.60 6.86 -51.93 -0.36 0.24 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 353.61 15.07 5.33 5.33 Total: -1.00 -33.08 353.61 -9.82 -42.91 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -8.50 Total: 2.19 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -3.84 Total: -12.13 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 2.20 Total: -55.01 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.08 -9.82 -42.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592275564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.205 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds